ERR12308515.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 17916833 lines in total Total number of methylation call strings processed: 35833666 Final Cytosine Methylation Report ================================= Total number of C's analysed: 604471857 Total methylated C's in CpG context: 16568795 Total methylated C's in CHG context: 6525401 Total methylated C's in CHH context: 18218492 Total C to T conversions in CpG context: 64344755 Total C to T conversions in CHG context: 95511774 Total C to T conversions in CHH context: 403302640 C methylated in CpG context: 20.5% C methylated in non-CpG context: 4.7%