ERR12308514.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 15402098 lines in total Total number of methylation call strings processed: 30804196 Final Cytosine Methylation Report ================================= Total number of C's analysed: 504822204 Total methylated C's in CpG context: 13178152 Total methylated C's in CHG context: 5254320 Total methylated C's in CHH context: 13685016 Total C to T conversions in CpG context: 54251986 Total C to T conversions in CHG context: 78055510 Total C to T conversions in CHH context: 340397220 C methylated in CpG context: 19.5% C methylated in non-CpG context: 4.3%