ERR12308513.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 21654716 lines in total Total number of methylation call strings processed: 43309432 Final Cytosine Methylation Report ================================= Total number of C's analysed: 694608329 Total methylated C's in CpG context: 20104000 Total methylated C's in CHG context: 2584187 Total methylated C's in CHH context: 6988737 Total C to T conversions in CpG context: 78456653 Total C to T conversions in CHG context: 121114454 Total C to T conversions in CHH context: 465360298 C methylated in CpG context: 20.4% C methylated in non-CpG context: 1.6%