ERR12308511.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 22486539 lines in total Total number of methylation call strings processed: 44973078 Final Cytosine Methylation Report ================================= Total number of C's analysed: 855356881 Total methylated C's in CpG context: 33773034 Total methylated C's in CHG context: 12241585 Total methylated C's in CHH context: 30062225 Total C to T conversions in CpG context: 94179096 Total C to T conversions in CHG context: 151706866 Total C to T conversions in CHH context: 533394075 C methylated in CpG context: 26.4% C methylated in non-CpG context: 5.8%