ERR12308510.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 17197450 lines in total Total number of methylation call strings processed: 34394900 Final Cytosine Methylation Report ================================= Total number of C's analysed: 563119923 Total methylated C's in CpG context: 11250576 Total methylated C's in CHG context: 3670810 Total methylated C's in CHH context: 11678732 Total C to T conversions in CpG context: 61252367 Total C to T conversions in CHG context: 89257856 Total C to T conversions in CHH context: 386009582 C methylated in CpG context: 15.5% C methylated in non-CpG context: 3.1%