ERR12308509.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 16231690 lines in total Total number of methylation call strings processed: 32463380 Final Cytosine Methylation Report ================================= Total number of C's analysed: 549958331 Total methylated C's in CpG context: 11484781 Total methylated C's in CHG context: 3911732 Total methylated C's in CHH context: 10486014 Total C to T conversions in CpG context: 61581383 Total C to T conversions in CHG context: 86656252 Total C to T conversions in CHH context: 375838169 C methylated in CpG context: 15.7% C methylated in non-CpG context: 3.0%