ERR12308508.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 14675307 lines in total Total number of methylation call strings processed: 29350614 Final Cytosine Methylation Report ================================= Total number of C's analysed: 485998107 Total methylated C's in CpG context: 13255629 Total methylated C's in CHG context: 5970704 Total methylated C's in CHH context: 15911092 Total C to T conversions in CpG context: 51624665 Total C to T conversions in CHG context: 74979852 Total C to T conversions in CHH context: 324256165 C methylated in CpG context: 20.4% C methylated in non-CpG context: 5.2%