ERR12308507.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 16539731 lines in total Total number of methylation call strings processed: 33079462 Final Cytosine Methylation Report ================================= Total number of C's analysed: 566297979 Total methylated C's in CpG context: 17977008 Total methylated C's in CHG context: 5364810 Total methylated C's in CHH context: 13855827 Total C to T conversions in CpG context: 60434909 Total C to T conversions in CHG context: 96349124 Total C to T conversions in CHH context: 372316301 C methylated in CpG context: 22.9% C methylated in non-CpG context: 3.9%