ERR12308506.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 34589209 lines in total Total number of methylation call strings processed: 69178418 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1398303574 Total methylated C's in CpG context: 63091405 Total methylated C's in CHG context: 30735799 Total methylated C's in CHH context: 77118709 Total C to T conversions in CpG context: 150174528 Total C to T conversions in CHG context: 242624280 Total C to T conversions in CHH context: 834558853 C methylated in CpG context: 29.6% C methylated in non-CpG context: 9.1%