ERR12308505.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 13862213 lines in total Total number of methylation call strings processed: 27724426 Final Cytosine Methylation Report ================================= Total number of C's analysed: 485969252 Total methylated C's in CpG context: 19915330 Total methylated C's in CHG context: 9271467 Total methylated C's in CHH context: 22496677 Total C to T conversions in CpG context: 52318237 Total C to T conversions in CHG context: 80693490 Total C to T conversions in CHH context: 301274051 C methylated in CpG context: 27.6% C methylated in non-CpG context: 7.7%