ERR10684019.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 39226980 lines in total Total number of methylation call strings processed: 78453960 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1581681525 Total methylated C's in CpG context: 36942981 Total methylated C's in CHG context: 6021936 Total methylated C's in CHH context: 24556377 Total C to T conversions in CpG context: 162273199 Total C to T conversions in CHG context: 271371537 Total C to T conversions in CHH context: 1080515495 C methylated in CpG context: 18.5% C methylated in non-CpG context: 2.2%