ERR10684006.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 42474507 lines in total Total number of methylation call strings processed: 84949014 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1235917839 Total methylated C's in CpG context: 22965812 Total methylated C's in CHG context: 5991927 Total methylated C's in CHH context: 23817704 Total C to T conversions in CpG context: 141478111 Total C to T conversions in CHG context: 216059071 Total C to T conversions in CHH context: 825605214 C methylated in CpG context: 14.0% C methylated in non-CpG context: 2.8%