---
title: "02-Apulcra-download"
output: md_document
---


#downloading A pulcra RNA-seq


```{bash}
/home/shared/sratoolkit.2.11.2-ubuntu64/bin/fasterq-dump.2.11.2 -h
```

```
/home/shared/sratoolkit.2.11.2-ubuntu64/bin/fasterq-dump.2.11.2 \
--outdir /home/sr320/ncbi  \
--split-files \
--threads 27 \
--mem 100GB \
--progress \
SRR8601366 \
SRR8601367 \
SRR8601368
SRR8601369
SRR8601370
SRR8601371
SRR8601372
SRR8601373
SRR8601374
SRR8601375
SRR8601376
SRR8601377
SRR8601378
SRR8601379
SRR8601380
SRR8601381
SRR8601382
SRR8601383
SRR8601384
SRR8601385
SRR8601386
SRR8601387
SRR8601388
SRR8601389
SRR8601390
SRR8601391
SRR8601392
SRR8601393
SRR8601394
SRR8601395
SRR8601396
SRR8601397
SRR8601398
SRR8601399
```
```{bash}
/home/shared/sratoolkit.2.11.2-ubuntu64/bin/fasterq-dump.2.11.2 --help

```


```{bash}
for i in $(cat ../data/acc_list01.txt); do echo $i; date; 
/home/shared/sratoolkit.2.11.2-ubuntu64/bin/fasterq-dump.2.11.2 \
--outdir /home/sr320/ncbi  \
--split-files \
--threads 48 \
--mem 100GB \
--progress \
$i; done

```
