---
title: "01-Acropora-genomes"
output: md_document
---

# Looking at genomes

<https://www.ncbi.nlm.nih.gov/data-hub/genome/?taxon=6127>

![ncbi](https://gannet.fish.washington.edu/seashell/snaps/Genome_-_NCBI_-_NLM_2023-03-02_11-52-28.png)

## millipora

```{bash}
head ../data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fna
```

```{bash}
grep '>' ../data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fna | wc -l
```

```{bash}
grep '>' ../data/Adig/ncbi_dataset/data/GCF_000222465.1/GCF_000222465.1_Adig_1.1_genomic.fna | head -40
```

## A digitera

```{bash}
head ../data/Adig/ncbi_dataset/data/GCF_000222465.1/GCF_000222465.1_Adig_1.1_genomic.fna
```

```{bash}
grep '>' ../data/Adig/ncbi_dataset/data/GCF_000222465.1/GCF_000222465.1_Adig_1.1_genomic.fna | wc -l
```

```{bash}
grep '>' ../data/Adig/ncbi_dataset/data/GCF_000222465.1/GCF_000222465.1_Adig_1.1_genomic.fna | head -40
```

## A hyacinthus

```{bash}
head ../data/Ahya/ncbi_dataset/data/GCA_020536085.1/GCA_020536085.1_Ahyacinthus.chrsV1_genomic.fna
```

```{bash}
grep '>' ../data/Ahya/ncbi_dataset/data/GCA_020536085.1/GCA_020536085.1_Ahyacinthus.chrsV1_genomic.fna | wc -l
```

```{bash}
grep '>' ../data/Ahya/ncbi_dataset/data/GCA_020536085.1/GCA_020536085.1_Ahyacinthus.chrsV1_genomic.fna | head -40
```
