FastQCFastQC Report
Wed 19 Feb 2025
PSC-0559_R2.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenamePSC-0559_R2.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25731653
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length41-140
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2628641.021558933660422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)