FastQCFastQC Report
Wed 19 Feb 2025
PSC-0517_R2.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenamePSC-0517_R2.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29902010
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length41-140
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1547390.5174869515460667No Hit
GCTGTCTCTTTCTTATACCTGGAAGTTAATATTTTTGTGAAGAAGCAAAA487060.16288537125096272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)