H5Aclose Close an HDF5 attribute H5Acreate Create an attribute for an HDF5 object H5Adelete Delete an specified attribute of an HDF5 object H5Aexists Check whether an specific attribute exists for an HDF5 object H5Aget_name Get the name of an HDF5 attribute object H5Aget_space Get a copy of the attribute dataspace H5Aget_type Get a copy of the attribute datatype H5Aopen Open an attribute for an HDF5 object H5Aread Read data from an HDF5 attribute H5Awrite Write data to an HDF5 attribute H5Dchunk_dims Return the dimensions of a dataset chunk H5Dclose Close an open HDF5 dataset H5Dcreate Create a new HDF5 dataset H5Dget_create_plist Return a copy of the dataset creation property list for a dataset H5Dget_space Return a copy of the HDF5 dataspace for a dataset H5Dget_storage_size Find the amount of storage allocated for a dataset H5Dget_type Return a copy of the HDF5 datatype for a dataset H5Dopen Open an existing HDF5 dataset H5Dread Read from an HDF5 dataset H5Dset_extent Change the dimensions of an HDF5 dataset H5Dwrite Write data to dataset H5Fclose Close access to an HDF5 file H5Fcreate Create an HDF5 file H5Fflush Flush all buffers associated with a file to disk H5Fget_filesize Find the size of an open HDF5 file H5Fget_name Retrieve the name of the file to which an object belongs H5Fget_plist Get property lists associated with an HDF5 file H5Fis_hdf5 Determine whether a file is in the HDF5 format H5Fopen Open an existing HDF5 file H5Gclose Close a specified group H5Gcreate Create a new HDF5 group and link it to a location in a file H5Gcreate_anon Create a new HDF5 group without linking it into a file H5Gget_info Retrieve information about a group H5Gopen Open a specified group H5IdComponent-class An S4 class representing an H5 object H5Iget_name Retrieve the name of an object from a given identifier H5Iget_type Find the type of an object H5Iis_valid Determine whether an identifier is valid H5Lcopy Copy a link from one location to another H5Lcreate_external Create a link to an object in a different HDF5 file H5Ldelete Remove a link from a group H5Lexists Confirm existence of a link H5Lget_info Find information about a link H5Lmove Move a link within an HDF5 file H5Oclose Close an HDF5 object H5Ocopy Copies an HDF5 object H5Oget_num_attrs Find the number of attributes associated with an HDF5 object H5Olink Create a hard link to an object in an HDF5 file H5Oopen Open an object in an HDF5 file H5P_chunk Get and set the size of the chunks used to store a chunked layout dataset H5P_chunk_cache Set parameters for the raw data chunk cache H5P_create_intermediate_group Get and set whether to create missing intermediate groups H5P_fill_time Set the time when fill values are written to a dataset H5P_fill_value Set the fill value for an HDF5 dataset H5P_layout Get and set the type of storage used to store the raw data for a dataset H5P_libver_bounds Control the range of HDF5 library versions that will be compatible with a file. H5Pall_filters_avail Query dataset filter properties. H5Pclose Close and release a property list H5Pcopy Copy an existing property list to create a new property list H5Pcreate Create a new HDF5 property list H5Pfill_value_defined Determine whether a property list has a fill value defined H5Pget_class Return the property list class identifier for a property list H5Pget_version Get version information for objects in a file creation property list H5Pobject_track_times Set whether to record timestamps for operations performed on an HDF5 object. H5Pset_blosc Add the BLOSC filter to the chunk processing pipeline. H5Pset_bzip2 Add the BZIP2 filter to the chunk processing pipeline. H5Pset_deflate Add the deflate compression filter to the chunk processing pipeline. H5Pset_fapl_ros3 Set the read-only S3 virtual file driver H5Pset_istore_k Get and set the 1/2 rank of an indexed storage B-tree H5Pset_lzf Add the LZF filter to the chunk processing pipeline. H5Pset_nbit Add the N-Bit filter to the chunk processing pipeline. H5Pset_shared_mesg_index Get and set shared object header message index properties H5Pset_shared_mesg_nindexes Get and set the number of object header message indexes H5Pset_shared_mesg_phase_change Get and set threshold values for storage of shared object header message indexes H5Pset_shuffle Add the shuffle filter to the chunk processing pipeline. H5Pset_sizes Get and set the sizes of offsets and lengths used in an HDF5 file H5Pset_sym_k Get and set the size of the symbol table B-tree 1/2 rank and the leaf node 1/2 size H5Pset_szip Add the SZIP compression filter to the chunk processing pipeline. H5Pset_userblock Get and set the user block size H5R H5R - References to objects and regions H5Rcreate Create a reference H5Rdereference Open a reference object. H5Ref-class An S4 class representing H5 references. H5Rget_name Return the name of the object that a reference points to H5Rget_obj_type Identify the type of object that a reference points to H5Rget_region Return selection for a reference to dataset region H5Sclose Close and release a dataspace H5Scombine_hyperslab Perform operation between an existing selection and an another hyperslab definition. H5Scombine_select Combine two selections H5Scopy Create a copy of a dataspace H5Screate Create a new dataspace of a specified type H5Screate_simple Create a simple dataspace H5Sget_select_npoints Find the number of elements in a dataspace selection H5Sget_simple_extent_dims Find the size of a dataspace H5Sis_simple Determine whether a dataspace is a simple dataspace H5Sselect_all Set the selection region of a dataspace to include all elements H5Sselect_hyperslab Perform operation between an existing selection and an another hyperslab definition. H5Sselect_index Select elements of a dataspace using R-style indexing H5Sselect_none Set the selection region of a dataspace to include no elements H5Sselect_valid Check that a selection is valid H5Sset_extent_simple Set the size of a dataspace H5Sunlimited Retrieve value for 'H5S_UNLIMITED' constant H5T_cset Retrieve or set the character set to be used in a string datatype. H5T_precision Retrieve or set the precision of an HDF5 datatype H5T_size Retrieve or set the type of padding used by string datatype H5T_strpad Retrieve or set the type of padding used by string datatype H5Tcopy Copy an existing datatype H5Tis_variable_str Determine whether a datatype is a variable length string H5Zfilter_avail Determine whether a filter is available on this system H5functions HDF5 General Library Functions h5_FileLocking Test and set file locking for HDF5 h5_createAttribute Create HDF5 attribute h5_createDataset Create HDF5 dataset h5_createFile Create HDF5 file h5_createGroup Create HDF5 group h5_delete Delete objects within a HDF5 file h5_deleteAttribute Delete attribute h5_dump Dump the content of an HDF5 file. h5_errorHandling Set how HDF5 error messages are displayed h5_read Reads and write object in HDF5 files h5_readAttributes Read all attributes from a given location in an HDF5 file h5_save Saves a one or more objects to an HDF5 file. h5_set_extent Set a new dataset extension h5_write Write object to an HDF5 file. h5_writeAttribute Write an R object as an HDF5 attribute h5closeAll Close all open HDF5 handles h5constants HDF5 library constants. h5listObjects List all open HDF5 objects. h5ls List the content of an HDF5 file. h5version Print the rhdf5 and libhdf5 version numbers rhdf5 rhdf5: An interface between HDF5 and R