calculateSimMatrix calculateSimMatrix Calculate the score similarity matrix between terms getGoSize getGoSize Get GO term size (# of genes) getGoTerm getGoTerm Get the description of a GO term gg_color_hue gg_color_hue Emulate ggplot2 color palette. heatmapPlot heatmapPlot Plot similarity matrix as a heatmap loadOrgdb loadOrgdb Load an orgdb object reduceSimMatrix reduceSimMatrix Reduce a set of GO terms based on their semantic similarity and scores. scatterPlot scatterPlot Plot GO terms as scattered points. shiny_rrvgo shiny_rrvgo Launch an interactive web interface. treemapPlot treemapPlot Plot GO terms as a treemap. wordcloudPlot wordlcoudPlot Plot GO reduced terms as a wordcloud.