AddToNamespace Insert/remove function names in/from the NAMESPACE file Diag.fill Diagonal Matrix Dist Distance matrix Hash Hash object Lbeta Natural logarithm of the beta function Lchoose Binomial coefficient and its logarithm Lgamma Natural logarithm of the gamma function and its derivatives. Log Natural Logarithm each element of a matrix Match Match Norm Norm of a matrix Outer Outer function Pmax Minima and maxima of two vectors/matrices Rank Ranks of the values of a vector Rfast-package Really fast R functions Rnorm Simulation of random values from a normal distribution Round Round each element of a matrix/vector Sort Sort - Integer Sort - Sort a vector coresponding to another Stack Represantation of Stack Table Table Creation - Frequency of each value Var Variance (and standard deviation) of a vector XopY.sum Operations between two matrices or matrix and vector all_equals Equality of objects allbetas Simple linear regressions coefficients allttests Matrix with all pairs of t-tests ancova1 Analysis of covariance ancovas Many ANCOVAs anova_propreg Significance testing for the coefficients of Quasi binomial or the quasi Poisson regression anova_quasipois.reg ANOVA for two quasi Poisson regression models apply.condition Apply to each column a method under condition ar1 Estimation of an AR(1) model as.Rfast.function Convert R function to the Rfast's coresponding bc Estimation of the Box-Cox transformation beta.mle MLE of distributions defined in the (0, 1) interval bic.corfsreg BIC (using partial correlation) forward regression bic.fs.reg BIC forward regression with generalised linear models binary_search Binary search algorithm boot.ttest2 Bootstrap t-test for 2 independent samples bs.reg Backward selection regression btmprobs Fitted probabilities of the Terry-Bradley model cat.goftests Many one sample goodness of fit tests for categorical data checkNamespace Check Namespace and Rd files check_data Search for variables with zero range in a matrix cholesky Cholesky decomposition of a square matrix circlin.cor Circular-linear correlation col.yule Column-wise Yule's Y (coefficient of colligation) colAny Column and row-wise Any colCountValues Row - Wise matrix/vector count the frequency of a value colCumSums Colum-wise cumulative operations (sum, prod, min, max) colMads Column and row-wise mean absolute deviations colMedians Column and row-wise medians colMins Column-wise minimum and maximum of a matrix colOrder Column and row-wise Order - Sort Indices colPmax Column-row wise minima and maxima of two matrices colRanks Column and row-wise ranks colShuffle Column and row-wise Shuffle colSort Sorting of the columns-rows of a matrix colTabulate Column and row-wise tabulate colTrue Column-wise true/false value of a matrix colVars Column and row-wise variances and standard deviations of a matrix colanovas Many Welch's F-tests colaucs Many area under the curve values colcvs Column and row wise coefficients of variation coldiffs Column-wise differences colexpmle Column-wise MLE of some univariate distributions colkurtosis Column-wise kurtosis and skewness coefficients colmeans Column and row-wise means of a matrix colnth Column and row-wise nth smallest value of a matrix/vector colpoisdisp.tests Many tests for the dispersion parameter in Poisson distribution colpoisson.anovas Many ANOVAS for count data with Poisson or quasi Poisson models colprods Column and row-wise products colrange Column and row-wise range of values of a matrix. colrint.regbx Many random intercepts LMMs for balanced data with a single identical covariate colrow.value Check if any column or row is fill with values colsums Column and row-wise sums of a matrix columns Get specific columns/rows fo a matrix colvarcomps.mom Many moment and maximum likelihood estimations of variance components colwatsons Column-wise uniformity tests for circular data comb_n All k possible combinations from n elements cor.fbed FBED variable selection method using the correlation cor.fsreg Correlation based forward regression. corpairs Correlation between pairs of variables correls Correlation between a vector and a set of variables cova Fast covariance and correlation matrix calculation cox.poisrat Cox confidence interval for the ratio of two Poisson variables data.frame.to_matrix Convert a dataframe to matrix dcor Distance correlation dcor.ttest Hypothesis test for the distance correlation design_matrix Design Matrix diri.nr2 Fitting a Dirichlet distribution via Newton-Rapshon dirknn k-NN algorithm using the arc cosinus distance dirknn.cv Cross-Validation for the k-NN algorithm using the arc cosinus distance dista Distance between vectors and a matrix dmvnorm Density of the multivariate normal and t distributions dvar Distance variance and covariance edist Energy distance between matrices eel.test1 Empirical and exponential empirical likelihood tests for one sample eel.test2 Empirical and exponential empirical likelihood tests for two samples eigen.sym Limited number of eigenvalues and eigenvectors of a symmetric matrix env.copy Deep copy exact.ttest2 Exact t-test for 2 independent samples expregs Many exponential regressions fish.kent Hypothesis test for von Mises-Fisher distribution over Kent distribution floyd Floyd-Warshall algorithm for shortest paths in a directed graph freq.min Minimum and maximum frequencies of a vector fs.reg Variable selection in generalised linear regression models with forward selection ftest Multi-sample tests for vectors ftests Many multi-sample tests g2Test G-square test of conditional indepdence g2Test_univariate Matrix with G-square tests of indepdence g2tests Many G-square tests of indepedence gammamle MLE of continuous univariate distributions defined on the positive line gammareg Gamma regression with a log-link gaussian.nb Naive Bayes classifiers gaussiannb.pred Prediction with some naive Bayes classifiers gchi2Test Chi-square and G-square tests of (unconditional) indepdence geom.regs Many simple geometric regressions. ginis Many Gini coefficients glm_logistic Logistic and Poisson regression models group Some summary statistics of a vector for each level of a grouping variable. hash.find Find the given value in a hash table hash.list Hash - Pair function hash2list Hash object to a list object hd.eigen Eigenvalues in high dimensional principal component analysis invdir.mle MLE of the inverted Dirichlet distribution invgauss.reg Inverese Gaussian regression with a log-link is.symmetric Check whether a square matrix is symmetric is_element Find element is_integer Check if values are integers and convert to integer iterator Iterator james James multivariate version of the t-test knn k nearest neighbours algorithm (k-NN) knn.cv Cross-Validation for the k-NN algorithm kruskaltests Many multi-sample tests kuiper Uniformity tests for circular data list.ftests Many F-tests with really huge matrices lmfit Linear models for large scale data logistic.cat1 Logistic or Poisson regression with a single categorical predictor logistic_only Many univariate simple binary logistic regressions lower_tri Lower and Upper triangular of a matrix mad2 Mean - Median absolute deviation of a vector mahala Mahalanobis distance mat.mat Number of equal columns between two matrices mat.mult Matrix multiplication, Cross and Tcross product. match.coefs Column-wise matching coefficients matrnorm Generates random values from a normal and puts them in a matrix med Median of a vector mediandir Fast calculation of the spherical and hyperspherical median min_max Minimum and maximum of a vector multinom.mle MLE for multivariate discrete data multinom.reg Multinomial regression multinom.regs Many simple multinomial regressions. mv.eeltest1 Exponential empirical likelihood for a one sample mean vector hypothesis testing mv.eeltest2 Exponential empirical likelihood hypothesis testing for two mean vectors mvbetas Many multivariate simple linear regressions coefficients mvkurtosis Multivariate kurtosis mvnorm.mle MLE of the multivariate (log-) normal distribution mvt.mle MLE of the multivariate t distribution negative Apply method to Positive and Negative number normal.mle MLE of continuous univariate distributions defined on the real line normlog.reg Gaussian regression with a log-link normlog.regs Many simple regressions for positive valued data odds Many odds ratio tests odds.ratio Odds ratio and relative risk ompr Orthogonal matching pursuit variable selection ordinal.mle MLE of the ordinal model without covariates pc.skel The skeleton of a Bayesian network produced by the PC algorithm percent.ttest Hypothesis test for two means of percentages percent.ttests Many hypothesis tests for two means of percentages permcor Permutation based p-value for the Pearson correlation coefficient permutation Permutation poisdisp.test Tests for the dispersion parameter in Poisson distribution poisson.anova Analysis of variance with a count variable poisson.anovas Many analysis of variance tests with a discrete variable poly.cor Polyserial correlation pooled.cov Pooled covariance matrix prop.reg Quasi binomial regression for proportions proptests Many 2 sample proportions tests qpois.reg Quasi Poisson regression quasi.poisson_only Many univariate simple poisson regressions racg Angular central Gaussian random values simulation rbing Simulating from a Bingham distribution rbingham Simulation of random values from a Bingham distribution with any symmetric matrix read.directory Reading the files of a directory regression Many univariate simple linear regressions rep_col Replicate columns/rows rint.mle Moment and maximum likelihood estimation of variance components rint.reg Random intercepts linear mixed models rint.regs Many simple linear mixed model regressions rm.anova Repeated measures anova rm.lines Many regression based tests for single sample repeated measures rmdp High dimensional MCD based detection of outliers rmvlaplace Multivariate Laplace random values simulation rmvnorm Multivariate normal and t random values simulation rowMins Row-wise minimum and maximum of a matrix. rowTrue Row-wise true value of a matrix rvmf Random values simulation from a von Mises-Fisher distribution rvonmises Random values simulation from a von Mises distribution score.glms Many score based regressions sftests Many Shapiro-Francia normality tests skew Skewness and kurtosis coefficients skew.test2 Hypothesis testing between two skewness or kurtosis coefficients sort_unique Sort and unique sourceR Source many R files spat.med Spatial median for Euclidean data spatmed.reg Spatial median regression spdinv Inverse of a symmetric positive definite matrix spml.reg Circular or angular regression spml.regs Many simple circular or angular regressions squareform Vector allocation in a symmetric matrix sscov Spatial sign covariance matrix standardise Standardisation submatrix Sub-matrix tobit.mle MLE of the tobit model topological_sort Topological sort of a DAG total.dist Sum of all pairwise distances in a distance matrix transpose Transpose of a matrix ttest Many one sample tests ttest1 One sample t-test for a vector ttests Many 2 sample tests tests twoway.anovas Many two-way ANOVAs ufactor Fast and general represantation of a factor variable univglms Many univariate generalised linear regressions vm.mle MLE of some circular distributions vmf.mle MLE of (hyper-)spherical distributions weib.reg Weibull regression model which.is Index of the columns of a data.frame which are a specific type yule Yule's Y (coefficient of colligation) zip.mle MLE of count data