`supplemental-file` ### Supplemental figures, files, and tables for manuscript --- - [`01.01-fmcoe-max-predom-isos-gene_fpkm.csv`](01.01-fmcoe-max-predom-isos-gene_fpkm.csv): Produced by [`01.01-supplemental-tables.Rmd`](../code/01.01-supplemental-tables.Rmd). Comma separated table with the following columns: - `gene_name` - `females_controls_max_transcript_counts` - `males_controls_max_transcript_counts` - `females_exposed_max_transcript_counts` - `males_exposed_max_transcript_counts` - `max_transcript_counts` - `females_controls_predom_isoform` - `females_exposed_predom_isoform` - `males_controls_predom_isoform` - `males_exposed_predom_isoform` - `females_controls_predom_expression` - `females_exposed_predom_expression` - `males_controls_predom_expression` - `males_exposed_predom_expression` - `females_controls_mean_gene_FPKM` - `females_exposed_mean_gene_FPKM` - `males_controls_mean_gene_FPKM` - `males_exposed_mean_gene_FPKM` - [`faceted-volcano_plots-fmcoe-DETs-DEGs.png`](faceted-volcano_plots-fmcoe-DETs-DEGs.png): Facet of female/male controls/exposed expressed transcripts and genes volcano plots. Generated by [`18-differential-gene-expression-ballgown.Rmd`](https://github.com/sr320/ceabigr/blob/main/code/18-differential-gene-expression-ballgown.Rmd) - [`CpG-location-statResults-Fem.txt)`](https://github.com/sr320/ceabigr/blob/main/supplemental-files/CpG-location-statResults-Fem.txt): Generated by [`Genomic-Location-of-DML.Rmd)`](https://github.com/sr320/ceabigr/blob/main/code/Genomic-Location-of-DML.Rmd). - [`CpG-location-statResults-Male.txt`](https://github.com/sr320/ceabigr/blob/main/supplemental-files/CpG-location-statResults-Male.txt): Generated by [`Genomic-Location-of-DML.Rmd)`](https://github.com/sr320/ceabigr/blob/main/code/Genomic-Location-of-DML.Rmd). - [`fem-CpG-location-statResults.txt`](https://github.com/sr320/ceabigr/blob/main/supplemental-files/fem-CpG-location-statResults.txt): Generated by [`General-Methylation-Landscape.Rmd`](https://github.com/sr320/ceabigr/blob/main/code/General-Methylation-Landscape.Rmd) - [`male-CpG-location-statResults.txt`](https://github.com/sr320/ceabigr/blob/main/supplemental-files/male-CpG-location-statResults.txt): Generated by [`General-Methylation-Landscape.Rmd`](https://github.com/sr320/ceabigr/blob/main/code/General-Methylation-Landscape.Rmd)