PLINK v1.90b7 64-bit (16 Jan 2023)
Options in effect:
  --allow-extra-chr
  --bfile ../output/52-genetic-relatedness/plink_files
  --genome
  --out ../output/52-genetic-relatedness/ibs_matrix

Hostname: raven
Working directory: /home/shared/8TB_HDD_01/sr320/github/ceabigr/code
Start time: Mon Jul 17 13:13:50 2023

Random number seed: 1689624830
253367 MB RAM detected; reserving 126683 MB for main workspace.
2343637 variants loaded from .bim file.
26 people (0 males, 0 females, 26 ambiguous) loaded from .fam.
Ambiguous sex IDs written to ../output/52-genetic-relatedness/ibs_matrix.nosex
.
Using up to 47 threads (change this with --threads).
Before main variant filters, 26 founders and 0 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is 0.688682.
2343637 variants and 26 people pass filters and QC.
Note: No phenotypes present.
IBD calculations complete.
Finished writing ../output/52-genetic-relatedness/ibs_matrix.genome .

End time: Mon Jul 17 13:13:50 2023