INFO  [2024-03-07 16:23:55] Initializing ALASCA (v1.0.15, 2024-02-07)
WARN  [2024-03-07 16:23:55] Guessing effects: `fold+fold:treatment+treatment`
INFO  [2024-03-07 16:23:55] Will use linear mixed models!
INFO  [2024-03-07 16:23:55] Will use Rfast!
WARN  [2024-03-07 16:23:55] Converting IDs to integer values
WARN  [2024-03-07 16:23:55] The `fold` column is used for stratification
WARN  [2024-03-07 16:23:55] Converting `character` columns to factors
INFO  [2024-03-07 16:23:55] Scaling data with sdall ...
INFO  [2024-03-07 16:23:55] Calculating LMM coefficients
INFO  [2024-03-07 16:23:55] Reducing the number of dimensions with PCA
INFO  [2024-03-07 16:23:57] Keeping 46 components from initial PCA, explaining 95.24 % of variation. The limit can be changed with `reduce_dimensions.limit`
INFO  [2024-03-07 16:23:57] -> Finished the reduction of dimensions!
WARN  [2024-03-07 16:23:57] Keeping 20 of 46 components. Change `max_PC` if necessary.
INFO  [2024-03-07 16:23:57] Starting validation: bootstrap
INFO  [2024-03-07 16:23:58] - Run 1 of 10
INFO  [2024-03-07 16:24:02] --- Used 4.21 seconds. Est. time remaining: 38.04 seconds
INFO  [2024-03-07 16:24:02] - Run 2 of 10
INFO  [2024-03-07 16:24:06] --- Used 4.36 seconds. Est. time remaining: 34.34 seconds
INFO  [2024-03-07 16:24:06] - Run 3 of 10
INFO  [2024-03-07 16:24:10] --- Used 4.24 seconds. Est. time remaining: 29.93 seconds
INFO  [2024-03-07 16:24:10] - Run 4 of 10
INFO  [2024-03-07 16:24:15] --- Used 4.18 seconds. Est. time remaining: 25.52 seconds
INFO  [2024-03-07 16:24:15] - Run 5 of 10
INFO  [2024-03-07 16:24:19] --- Used 4.29 seconds. Est. time remaining: 21.3 seconds
INFO  [2024-03-07 16:24:19] - Run 6 of 10
INFO  [2024-03-07 16:24:23] --- Used 4.2 seconds. Est. time remaining: 17.01 seconds
INFO  [2024-03-07 16:24:23] - Run 7 of 10
INFO  [2024-03-07 16:24:27] --- Used 4.27 seconds. Est. time remaining: 12.76 seconds
INFO  [2024-03-07 16:24:27] - Run 8 of 10
INFO  [2024-03-07 16:24:32] --- Used 4.24 seconds. Est. time remaining: 8.5 seconds
INFO  [2024-03-07 16:24:32] - Run 9 of 10
INFO  [2024-03-07 16:24:36] --- Used 4.47 seconds. Est. time remaining: 4.28 seconds
INFO  [2024-03-07 16:24:36] - Run 10 of 10
INFO  [2024-03-07 16:24:40] --- Used 4.21 seconds. Est. time remaining: 0 seconds
INFO  [2024-03-07 16:24:40] Calculating percentiles for score and loading
INFO  [2024-03-07 16:24:59] ==== ALASCA has finished ====
INFO  [2024-03-07 16:24:59] To visualize the model, try `plot(<object>, effect = 1, component = 1, type = 'effect')`
INFO  [2024-03-07 16:24:59] Scree plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1 and 2 and 3 and 4 and 5 and 6 and 7 and 8 and 9 and 10.
INFO  [2024-03-07 16:25:07] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-07 16:25:07] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-07 16:25:30] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-07 16:25:30] Showing 2000 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-07 16:25:43] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-07 16:25:43] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-07 16:25:48] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-07 16:25:48] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-07 16:25:53] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-07 16:25:53] Showing 20 of 11270 variables. Adjust the number with `n_limit`