INFO  [2024-03-06 16:44:24] Initializing ALASCA (v1.0.15, 2024-02-07)
WARN  [2024-03-06 16:44:24] Guessing effects: `fold+fold:treatment+treatment`
INFO  [2024-03-06 16:44:24] Will use linear mixed models!
INFO  [2024-03-06 16:44:24] Will use Rfast!
WARN  [2024-03-06 16:44:24] The `fold` column is used for stratification
WARN  [2024-03-06 16:44:24] Converting `character` columns to factors
INFO  [2024-03-06 16:44:24] Scaling data with sdall ...
INFO  [2024-03-06 16:44:25] Calculating LMM coefficients
WARN  [2024-03-06 16:44:30] Keeping 20 of 80 components. Change `max_PC` if necessary.
INFO  [2024-03-06 16:44:34] ==== ALASCA has finished ====
INFO  [2024-03-06 16:44:34] To visualize the model, try `plot(<object>, effect = 1, component = 1, type = 'effect')`
INFO  [2024-03-06 16:50:28] Scree plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1 and 2 and 3 and 4 and 5 and 6 and 7 and 8 and 9 and 10.
INFO  [2024-03-06 16:51:51] Scree plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1 and 2 and 3 and 4 and 5 and 6 and 7 and 8 and 9 and 10.
INFO  [2024-03-06 16:52:00] Scree plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1 and 2 and 3 and 4 and 5 and 6 and 7 and 8 and 9 and 10.
INFO  [2024-03-06 16:52:08] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:52:08] Showing 6 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:52:15] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:52:15] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:52:42] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:52:42] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:52:46] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:52:46] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:53:10] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:53:10] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:53:16] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:53:16] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:53:23] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:53:23] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:53:33] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:53:33] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:53:41] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:53:41] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:54:25] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:54:25] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:54:47] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:54:47] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:55:01] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 16:55:01] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:55:33] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 2.
WARN  [2024-03-06 16:55:33] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:55:46] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 3.
WARN  [2024-03-06 16:55:46] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:56:06] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 4.
WARN  [2024-03-06 16:56:06] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:56:14] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 16:56:14] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:56:22] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
WARN  [2024-03-06 16:56:22] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:56:29] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 7.
WARN  [2024-03-06 16:56:29] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:56:35] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 8.
WARN  [2024-03-06 16:56:35] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:56:47] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 16:56:47] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:56:53] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 10.
WARN  [2024-03-06 16:56:53] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 16:57:17] Scree plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1 and 2 and 3 and 4 and 5 and 6 and 7 and 8 and 9 and 10.