INFO  [2024-03-06 13:16:30] Initializing ALASCA (v1.0.15, 2024-02-07)
WARN  [2024-03-06 13:16:30] Guessing effects: `fold+fold:treatment+treatment`
INFO  [2024-03-06 13:16:30] Will use linear mixed models!
INFO  [2024-03-06 13:16:30] Will use Rfast!
WARN  [2024-03-06 13:16:31] The `fold` column is used for stratification
WARN  [2024-03-06 13:16:31] Converting `character` columns to factors
INFO  [2024-03-06 13:16:31] Scaling data with sdall ...
INFO  [2024-03-06 13:16:31] Calculating LMM coefficients
WARN  [2024-03-06 13:16:40] Keeping 20 of 80 components. Change `max_PC` if necessary.
INFO  [2024-03-06 13:16:46] ==== ALASCA has finished ====
INFO  [2024-03-06 13:16:46] To visualize the model, try `plot(<object>, effect = 1, component = 1, type = 'effect')`
INFO  [2024-03-06 13:16:50] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:16:50] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:16:58] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:16:58] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:17:05] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 2.
WARN  [2024-03-06 13:17:05] Showing 24 of 11270 variables. Adjust the number with `n_limit`
ERROR [2024-03-06 13:17:17] The effect you wanted to plot does not exist!
ERROR [2024-03-06 13:17:22] The effect you wanted to plot does not exist!
ERROR [2024-03-06 13:17:27] The effect you wanted to plot does not exist!
INFO  [2024-03-06 13:17:41] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 2.
WARN  [2024-03-06 13:17:41] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:17:49] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:17:49] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:17:56] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 2.
WARN  [2024-03-06 13:17:56] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:18:01] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 3.
WARN  [2024-03-06 13:18:01] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:18:09] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 4.
WARN  [2024-03-06 13:18:09] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:18:17] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:18:17] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:18:30] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
WARN  [2024-03-06 13:18:30] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:18:39] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 7.
WARN  [2024-03-06 13:18:39] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:18:44] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 8.
WARN  [2024-03-06 13:18:44] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:18:54] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:18:54] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:18:59] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 10.
WARN  [2024-03-06 13:18:59] Showing 24 of 11270 variables. Adjust the number with `n_limit`
ERROR [2024-03-06 13:20:02] The effect you wanted to plot does not exist!
INFO  [2024-03-06 13:20:08] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:20:08] Showing 24 of 11270 variables. Adjust the number with `n_limit`
ERROR [2024-03-06 13:20:14] The effect you wanted to plot does not exist!
INFO  [2024-03-06 13:20:21] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:20:21] Showing 24 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:20:29] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:20:29] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:20:50] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:20:50] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:20:55] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 2.
WARN  [2024-03-06 13:20:55] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:21:00] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 3.
WARN  [2024-03-06 13:21:00] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:21:17] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 4.
WARN  [2024-03-06 13:21:17] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:21:23] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:21:23] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:22:33] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:22:33] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:23:27] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 2.
WARN  [2024-03-06 13:23:27] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:23:42] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 3.
WARN  [2024-03-06 13:23:42] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:23:53] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:23:53] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:25:12] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:25:12] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:25:36] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
WARN  [2024-03-06 13:25:36] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:25:55] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
WARN  [2024-03-06 13:25:55] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:26:08] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:26:08] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:27:05] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 7.
WARN  [2024-03-06 13:27:05] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:28:03] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 8.
WARN  [2024-03-06 13:28:03] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:28:17] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 8.
WARN  [2024-03-06 13:28:17] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:28:55] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 10.
WARN  [2024-03-06 13:28:55] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:29:28] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:29:28] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:30:21] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:30:21] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:31:16] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:31:16] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:31:41] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:31:41] Showing 10 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:33:30] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:33:30] Showing 6 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:34:39] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:34:39] Showing 10 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:34:43] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:34:43] Showing 6 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:37:05] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
WARN  [2024-03-06 13:37:05] Showing 6 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:40:45] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
WARN  [2024-03-06 13:40:45] Showing 6 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:45:03] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:45:03] Showing 6 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:45:38] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 8.
WARN  [2024-03-06 13:45:38] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:45:45] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:45:45] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:45:53] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 10.
WARN  [2024-03-06 13:45:53] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:46:04] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 10.
WARN  [2024-03-06 13:46:04] Showing 10 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:46:11] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 10.
WARN  [2024-03-06 13:46:11] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:46:32] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:46:32] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:46:38] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:46:38] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:46:52] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:46:52] Showing 40 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:47:00] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:47:00] Showing 1000 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:47:08] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:47:08] Showing 2000 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:47:16] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:47:16] Showing 11270 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:48:01] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:48:01] Showing 2000 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:48:18] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:48:18] Showing 200 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:48:30] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 9.
WARN  [2024-03-06 13:48:30] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:50:09] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
WARN  [2024-03-06 13:50:09] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:50:51] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 7.
WARN  [2024-03-06 13:50:51] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:53:56] Scree plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1 and 2 and 3 and 4 and 5 and 6 and 7 and 8 and 9 and 10.
INFO  [2024-03-06 13:55:16] Prediction plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 1.
INFO  [2024-03-06 13:55:16] Selecting the 5 variables with highest/lowest loading on `fold+fold:treatment+treatment` (PC1). Use `variable` to specify variables to plot
INFO  [2024-03-06 13:55:37] Prediction plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
INFO  [2024-03-06 13:55:37] Selecting the 5 variables with highest/lowest loading on `fold+fold:treatment+treatment` (PC6). Use `variable` to specify variables to plot
INFO  [2024-03-06 13:56:05] Prediction plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
INFO  [2024-03-06 13:56:05] Selecting the 10 variables with highest/lowest loading on `fold+fold:treatment+treatment` (PC6). Use `variable` to specify variables to plot
INFO  [2024-03-06 13:56:36] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
WARN  [2024-03-06 13:56:36] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:56:44] Prediction plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
INFO  [2024-03-06 13:56:44] Selecting the 5 variables with highest/lowest loading on `fold+fold:treatment+treatment` (PC6). Use `variable` to specify variables to plot
INFO  [2024-03-06 13:56:53] Effect plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
WARN  [2024-03-06 13:56:53] Showing 20 of 11270 variables. Adjust the number with `n_limit`
INFO  [2024-03-06 13:57:08] Prediction plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 6.
INFO  [2024-03-06 13:57:08] Selecting the 5 variables with highest/lowest loading on `fold+fold:treatment+treatment` (PC6). Use `variable` to specify variables to plot
INFO  [2024-03-06 13:58:15] Prediction plot. Selected effect (nr 1): `fold+fold:treatment+treatment`. Component: 5.
INFO  [2024-03-06 13:58:15] Selecting the 5 variables with highest/lowest loading on `fold+fold:treatment+treatment` (PC5). Use `variable` to specify variables to plot