# tmpu6so198c_hmmscan :: search sequence(s) against a profile database # HMMER 3.4 (Aug 2023); http://hmmer.org/ # Copyright (C) 2023 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /home/shared/16TB_HDD_01/sr320/github/timeseries_molecular/D-Apul/data/Apulchra-genome.pep.fa # target HMM database: /home/shared/16TB_HDD_01/sr320/github/timeseries_molecular/D-Apul/output/38.02-Apul-phil/Pfam-A.hmm # multithread parallelization: 4 workers # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: FUN_000001-T1 [L=751] Description: FUN_000001 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (751 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 900 (0.0363842); expected 494.7 (0.02) Passed bias filter: 650 (0.0262775); expected 494.7 (0.02) Passed Vit filter: 51 (0.00206177); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.39 # Mc/sec: 7554.83 // Query: FUN_000002-T1 [L=794] Description: FUN_000002 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-07 30.5 0.0 0.02 15.7 0.0 2.9 3 SET SET domain ------ inclusion threshold ------ 0.029 14.5 0.0 0.062 13.5 0.0 1.5 1 PRDM2_PR PR domain zinc finger protein 2, PR domain 0.12 13.0 0.1 7.3 7.3 0.0 2.6 2 DUF5371 Family of unknown function (DUF5371) Domain annotation for each model (and alignments): >> SET SET domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.0 1.4 1.2e+04 10 43 .. 235 274 .. 229 343 .. 0.45 2 ! 12.5 0.0 2.5e-05 0.21 1 31 [. 684 712 .. 684 720 .. 0.81 3 ! 15.7 0.0 2.5e-06 0.02 65 104 .. 719 752 .. 705 753 .. 0.75 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 1.4 B-TTEEEEEEE..EEEEEEHHHHHHHHHH.....HCEEEEE CS xxxxxxxxxxx..xxxxxxxxxxxxxxxx.....xxxxxxx RF SET 10 ikkgelileyv..eklliteeeaeereee.....eylftld 43 + ge++ + e+ ++e+++r++ + l+tld FUN_000002-T1 235 FSIGEFMS-TCikEHGSTLPDEDHQRRRGrprvsSLLDTLD 274 55666663.33354334444444444433466663333333 PP == domain 2 score: 12.5 bits; conditional E-value: 2.5e-05 SEEEEESS-B-TTEEEEEEEEEEEEEHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SET 1 GrGlfAtedikkgelileyveklliteeeae 31 G+Glf+ ++i++g+l++ y++ t +ea+ FUN_000002-T1 684 GLGLFTLKKIPRGTLVCAYAP--TATIWEAR 712 89******************8..55555544 PP == domain 3 score: 15.7 bits; conditional E-value: 2.5e-06 CEE.SSTSEEEEEEECTTSTEEEEEESS-B-TTEEEEEES CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SET 65 iNHscepncevrvevvngekrivvfalrdIkkgeEltidY 104 i H + nc ++++ ++ i++++ rd+++geEl+++Y FUN_000002-T1 719 ISH--RVNC-EYCK---CGDGIWLKTVRDVSAGEELLMCY 752 445..4688.4444...59********************* PP >> PRDM2_PR PR domain zinc finger protein 2, PR domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 7.5e-06 0.062 83 115 .. 723 755 .. 717 762 .. 0.90 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 7.5e-06 --EEEEEETTEEEEEESS-B-TT-B-EEEE-TT CS PRDM2_PR 83 qNLvavqhkgeiYyrtikdIepgeeLlvwysee 115 N +++++ i+ +t++d+++geeLl++ys++ FUN_000002-T1 723 VNCEYCKCGDGIWLKTVRDVSAGEELLMCYSQD 755 69999*************************987 PP >> DUF5371 Family of unknown function (DUF5371) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.025 2.1e+02 6 31 .. 602 627 .. 600 636 .. 0.88 2 ? 7.3 0.0 0.00089 7.3 33 58 .. 716 741 .. 710 744 .. 0.86 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.025 DUF5371 6 HAqtvLpeedLeeLkkkcgesstkdA 31 H Lp ++ + Lk+ c + +t+ A FUN_000002-T1 602 HSNAFLPWHERQMLKQLCSQETTRTA 627 88899******************987 PP == domain 2 score: 7.3 bits; conditional E-value: 0.00089 DUF5371 33 siAveHYLeCeYtdlgedmwtkklEe 58 s + H ++CeY + g+ w k + FUN_000002-T1 716 SNVISHRVNCEYCKCGDGIWLKTVRD 741 77899***************998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (794 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 816 (0.0329884); expected 494.7 (0.02) Passed bias filter: 687 (0.0277733); expected 494.7 (0.02) Passed Vit filter: 56 (0.00226391); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.36 # Mc/sec: 8767.90 // Query: FUN_000003-T1 [L=57] Description: FUN_000003 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (57 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 447 (0.0180708); expected 494.7 (0.02) Passed bias filter: 289 (0.0116834); expected 494.7 (0.02) Passed Vit filter: 15 (0.000606404); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33 # Mc/sec: 681.76 // Query: FUN_000004-T1 [L=770] Description: FUN_000004 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (770 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 919 (0.0371523); expected 494.7 (0.02) Passed bias filter: 667 (0.0269647); expected 494.7 (0.02) Passed Vit filter: 52 (0.0021022); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.38 # Mc/sec: 8040.60 // Query: FUN_000005-T1 [L=794] Description: FUN_000005 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-07 30.5 0.0 0.02 15.7 0.0 2.9 3 SET SET domain ------ inclusion threshold ------ 0.029 14.5 0.0 0.062 13.5 0.0 1.5 1 PRDM2_PR PR domain zinc finger protein 2, PR domain 0.12 13.0 0.1 7.3 7.3 0.0 2.6 2 DUF5371 Family of unknown function (DUF5371) Domain annotation for each model (and alignments): >> SET SET domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.0 1.4 1.2e+04 10 43 .. 235 274 .. 229 343 .. 0.45 2 ! 12.5 0.0 2.5e-05 0.21 1 31 [. 684 712 .. 684 720 .. 0.81 3 ! 15.7 0.0 2.5e-06 0.02 65 104 .. 719 752 .. 705 753 .. 0.75 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 1.4 B-TTEEEEEEE..EEEEEEHHHHHHHHHH.....HCEEEEE CS xxxxxxxxxxx..xxxxxxxxxxxxxxxx.....xxxxxxx RF SET 10 ikkgelileyv..eklliteeeaeereee.....eylftld 43 + ge++ + e+ ++e+++r++ + l+tld FUN_000005-T1 235 FSIGEFMS-TCikEHGSTLPDEDHQRRRGrprvsSLLDTLD 274 55666663.33354334444444444433466663333333 PP == domain 2 score: 12.5 bits; conditional E-value: 2.5e-05 SEEEEESS-B-TTEEEEEEEEEEEEEHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SET 1 GrGlfAtedikkgelileyveklliteeeae 31 G+Glf+ ++i++g+l++ y++ t +ea+ FUN_000005-T1 684 GLGLFTLKKIPRGTLVCAYAP--TATIWEAR 712 89******************8..55555544 PP == domain 3 score: 15.7 bits; conditional E-value: 2.5e-06 CEE.SSTSEEEEEEECTTSTEEEEEESS-B-TTEEEEEES CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SET 65 iNHscepncevrvevvngekrivvfalrdIkkgeEltidY 104 i H + nc ++++ ++ i++++ rd+++geEl+++Y FUN_000005-T1 719 ISH--RVNC-EYCK---CGDGIWLKTVRDVSAGEELLMCY 752 445..4688.4444...59********************* PP >> PRDM2_PR PR domain zinc finger protein 2, PR domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 7.5e-06 0.062 83 115 .. 723 755 .. 717 762 .. 0.90 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 7.5e-06 --EEEEEETTEEEEEESS-B-TT-B-EEEE-TT CS PRDM2_PR 83 qNLvavqhkgeiYyrtikdIepgeeLlvwysee 115 N +++++ i+ +t++d+++geeLl++ys++ FUN_000005-T1 723 VNCEYCKCGDGIWLKTVRDVSAGEELLMCYSQD 755 69999*************************987 PP >> DUF5371 Family of unknown function (DUF5371) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.025 2.1e+02 6 31 .. 602 627 .. 600 636 .. 0.88 2 ? 7.3 0.0 0.00089 7.3 33 58 .. 716 741 .. 710 744 .. 0.86 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.025 DUF5371 6 HAqtvLpeedLeeLkkkcgesstkdA 31 H Lp ++ + Lk+ c + +t+ A FUN_000005-T1 602 HSNAFLPWHERQMLKQLCSQETTRTA 627 88899******************987 PP == domain 2 score: 7.3 bits; conditional E-value: 0.00089 DUF5371 33 siAveHYLeCeYtdlgedmwtkklEe 58 s + H ++CeY + g+ w k + FUN_000005-T1 716 SNVISHRVNCEYCKCGDGIWLKTVRD 741 77899***************998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (794 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 819 (0.0331096); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 57 (0.00230433); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.36 # Mc/sec: 8632.23 // Query: FUN_000006-T1 [L=873] Description: FUN_000006 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (873 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 720 (0.0291074); expected 494.7 (0.02) Passed bias filter: 531 (0.0214667); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.35 # Mc/sec: 9880.67 // Query: FUN_000007-T1 [L=152] Description: FUN_000007 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (152 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 492 (0.01989); expected 494.7 (0.02) Passed bias filter: 448 (0.0181113); expected 494.7 (0.02) Passed Vit filter: 37 (0.0014958); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.32 # Mc/sec: 1832.53 // Query: FUN_000008-T1 [L=99] Description: FUN_000008 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 15.8 0.0 0.035 15.0 0.0 1.5 2 SET SET domain Domain annotation for each model (and alignments): >> SET SET domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 0.31 7.6e+03 49 52 .. 32 35 .. 5 58 .. 0.60 2 ? 15.0 0.0 1.4e-06 0.035 1 23 [. 71 93 .. 71 99 .] 0.86 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.31 EEEE CS xxxx RF SET 49 yvid 52 ++id FUN_000008-T1 32 MYID 35 3333 PP == domain 2 score: 15.0 bits; conditional E-value: 1.4e-06 SEEEEESS-B-TTEEEEEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxx RF SET 1 GrGlfAtedikkgelileyvekl 23 G+Glf+ ++i++g+l++ y++++ FUN_000008-T1 71 GLGLFTLKKIPRGTLVCAYAPTA 93 89*****************9744 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (99 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 536 (0.0216688); expected 494.7 (0.02) Passed bias filter: 495 (0.0200113); expected 494.7 (0.02) Passed Vit filter: 28 (0.00113195); expected 24.7 (0.001) Passed Fwd filter: 1 (4.04269e-05); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.33 # Mc/sec: 1189.95 // Query: FUN_000009-T1 [L=477] Description: FUN_000009 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (477 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 1228 (0.0496442); expected 494.7 (0.02) Passed bias filter: 660 (0.0266818); expected 494.7 (0.02) Passed Vit filter: 37 (0.0014958); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.37 # Mc/sec: 5074.68 // Query: FUN_000010-T1 [L=241] Description: FUN_000010 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000010-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000010-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000010-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36 # Mc/sec: 2657.27 // Query: FUN_000011-T1 [L=241] Description: FUN_000011 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000011-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000011-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000011-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.34 # Mc/sec: 2757.73 // Query: FUN_000012-T1 [L=241] Description: FUN_000012 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000012-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000012-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000012-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.33 # Mc/sec: 2890.55 // Query: FUN_000013-T1 [L=179] Description: FUN_000013 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (179 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 509 (0.0205773); expected 494.7 (0.02) Passed bias filter: 341 (0.0137856); expected 494.7 (0.02) Passed Vit filter: 28 (0.00113195); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.31 # Mc/sec: 2225.58 // Query: FUN_000014-T1 [L=241] Description: FUN_000014 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000014-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000014-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000014-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.33 # Mc/sec: 2897.16 // Query: FUN_000015-T1 [L=241] Description: FUN_000015 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.22 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000015-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000015-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000015-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 613 (0.0247817); expected 494.7 (0.02) Passed bias filter: 503 (0.0203347); expected 494.7 (0.02) Passed Vit filter: 46 (0.00185964); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37 # Mc/sec: 2559.68 // Query: FUN_000016-T1 [L=241] Description: FUN_000016 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000016-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000016-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000016-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.33 # Mc/sec: 2838.51 // Query: FUN_000017-T1 [L=241] Description: FUN_000017 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000017-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000017-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000017-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.34 # Mc/sec: 2803.86 // Query: FUN_000018-T1 [L=241] Description: FUN_000018 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000018-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000018-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000018-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.34 # Mc/sec: 2763.27 // Query: FUN_000019-T1 [L=196] Description: FUN_000019 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (196 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 531 (0.0214667); expected 494.7 (0.02) Passed bias filter: 437 (0.0176666); expected 494.7 (0.02) Passed Vit filter: 28 (0.00113195); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.32 # Mc/sec: 2400.61 // Query: FUN_000020-T1 [L=241] Description: FUN_000020 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000020-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000020-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000020-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.34 # Mc/sec: 2772.13 // Query: FUN_000021-T1 [L=241] Description: FUN_000021 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000021-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000021-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000021-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.35 # Mc/sec: 2721.48 // Query: FUN_000022-T1 [L=241] Description: FUN_000022 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000022-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000022-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000022-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 626 (0.0253072); expected 494.7 (0.02) Passed bias filter: 513 (0.020739); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.34 # Mc/sec: 2790.27 // Query: FUN_000023-T1 [L=241] Description: FUN_000023 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000023-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000023-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000023-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.34 # Mc/sec: 2757.30 // Query: FUN_000024-T1 [L=241] Description: FUN_000024 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000024-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000024-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000024-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39 # Mc/sec: 2403.60 // Query: FUN_000025-T1 [L=241] Description: FUN_000025 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000025-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000025-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000025-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36 # Mc/sec: 2616.90 // Query: FUN_000026-T1 [L=241] Description: FUN_000026 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000026-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000026-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000026-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.34 # Mc/sec: 2815.19 // Query: FUN_000027-T1 [L=241] Description: FUN_000027 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000027-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000027-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000027-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.35 # Mc/sec: 2709.74 // Query: FUN_000028-T1 [L=196] Description: FUN_000028 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (196 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 531 (0.0214667); expected 494.7 (0.02) Passed bias filter: 437 (0.0176666); expected 494.7 (0.02) Passed Vit filter: 28 (0.00113195); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.33 # Mc/sec: 2329.85 // Query: FUN_000029-T1 [L=280] Description: FUN_000029 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-07 31.0 5.8 0.00016 22.1 0.6 2.5 2 zf-CCHC Zinc knuckle 0.0014 18.7 0.6 0.0014 18.7 0.6 2.8 3 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.0023 18.2 0.0 0.0047 17.2 0.0 1.5 1 RRM_1 RNA recognition motif ------ inclusion threshold ------ 0.12 11.9 0.5 0.19 11.2 0.5 1.3 1 DUF4663 Domain of unknown function (DUF4663) 0.25 11.8 0.0 0.51 10.8 0.0 1.5 1 RRM_7 RNA recognition motif 0.29 11.4 6.7 3.8 7.8 1.0 2.4 2 zf-CCHC_2 Zinc knuckle 1.3 9.1 5.0 16 5.7 0.6 2.9 3 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.3 0.5 0.00011 0.4 3 17 .. 154 168 .. 152 168 .. 0.91 2 ! 22.1 0.6 4.4e-08 0.00016 3 18 .] 173 188 .. 171 188 .. 0.91 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00011 TSSSSSSSSTTTTST CS zf-CCHC 3 CynCGepGHiardCp 17 C C e GH+ rdC FUN_000029-T1 154 CSVCRESGHLPRDCR 168 999***********5 PP == domain 2 score: 22.1 bits; conditional E-value: 4.4e-08 TSSSSSSSSTTTTSTS CS zf-CCHC 3 CynCGepGHiardCpk 18 C +C +pGH+ar+Cp+ FUN_000029-T1 173 CLKCRQPGHVARNCPS 188 889************6 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 1.1 0.15 5.2e+02 4 19 .. 153 168 .. 150 168 .. 0.87 2 ! 18.7 0.6 4e-07 0.0014 2 20 .. 170 188 .. 169 191 .. 0.92 3 ? -2.0 0.1 1.2 4.1e+03 15 21 .. 213 219 .. 212 221 .. 0.87 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 0.15 B-TTT-SSBS-TTT-- CS zf-CCHC_5 4 lCpRCkkgkHwardCh 19 C C H rdC+ FUN_000029-T1 153 FCSVCRESGHLPRDCR 168 68999999*******7 PP == domain 2 score: 18.7 bits; conditional E-value: 4e-07 --B-TTT-SSBS-TTT--- CS zf-CCHC_5 2 pglCpRCkkgkHwardChs 20 +glC++C + H+ar+C s FUN_000029-T1 170 SGLCLKCRQPGHVARNCPS 188 79***************88 PP == domain 3 score: -2.0 bits; conditional E-value: 1.2 TTT---S CS zf-CCHC_5 15 ardChsk 21 ar C s+ FUN_000029-T1 213 ARHCTSR 219 899**98 PP >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 1.3e-06 0.0047 1 30 [. 79 108 .. 79 116 .. 0.94 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 1.3e-06 EEEESETTTSSHHHHHHHHTTTSTEEEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksirl 30 ++V++Lp++v++ ++ F+ fG + sir FUN_000029-T1 79 VYVRDLPFEVSDADVVSAFRSFGVVLSIRP 108 8**************************986 PP >> DUF4663 Domain of unknown function (DUF4663) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.5 5.4e-05 0.19 279 312 .. 189 222 .. 162 230 .. 0.89 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 5.4e-05 DUF4663 279 snslldsdplPlaqsnPtPpsqgapegrtsrfsy 312 s sll sdp+P+ s+ +Pps a tsr++ FUN_000029-T1 189 STSLLSSDPTPVPASPESPPSVMAARHCTSRLTD 222 7899**************************9875 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 0.00014 0.51 4 29 .. 79 104 .. 77 116 .. 0.92 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00014 RRM_7 4 vfvGGlPiDiteeeltatfkafGkll 29 v+v lP+++++++++++f++fG +l FUN_000029-T1 79 VYVRDLPFEVSDADVVSAFRSFGVVL 104 89999******************985 PP >> zf-CCHC_2 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 0.5 0.0031 11 6 20 .. 154 168 .. 153 168 .. 0.92 2 ? 7.8 1.0 0.0011 3.8 6 20 .. 173 187 .. 172 188 .. 0.89 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0031 zf-CCHC_2 6 ChiCgkkGHyIqdCP 20 C +C + GH+ +dC+ FUN_000029-T1 154 CSVCRESGHLPRDCR 168 889***********5 PP == domain 2 score: 7.8 bits; conditional E-value: 0.0011 zf-CCHC_2 6 ChiCgkkGHyIqdCP 20 C C ++GH ++CP FUN_000029-T1 173 CLKCRQPGHVARNCP 187 888***********9 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 1.5 5.3e+03 2 13 .. 127 138 .. 126 140 .. 0.79 2 ? 5.7 0.6 0.0045 16 33 49 .] 153 169 .. 151 169 .. 0.93 3 ? 4.9 0.3 0.0078 28 31 48 .. 170 187 .. 168 188 .. 0.89 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 1.5 zf-CCHC_4 2 dvtkPLrffrri 13 +t+PL ++ ++ FUN_000029-T1 127 SFTDPLPSSLHV 138 69****888776 PP == domain 2 score: 5.7 bits; conditional E-value: 0.0045 zf-CCHC_4 33 fCfiCgrlgHsdkfCpk 49 fC++C gH ++C++ FUN_000029-T1 153 FCSVCRESGHLPRDCRY 169 9**************86 PP == domain 3 score: 4.9 bits; conditional E-value: 0.0078 zf-CCHC_4 31 rrfCfiCgrlgHsdkfCp 48 + +C C gH ++Cp FUN_000029-T1 170 SGLCLKCRQPGHVARNCP 187 689**************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (280 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 534 (0.021588); expected 494.7 (0.02) Passed bias filter: 406 (0.0164133); expected 494.7 (0.02) Passed Vit filter: 49 (0.00198092); expected 24.7 (0.001) Passed Fwd filter: 8 (0.000323415); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.34 # Mc/sec: 3186.33 // Query: FUN_000030-T1 [L=241] Description: FUN_000030 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.2 0.0 0.08 13.3 0.0 1.5 1 RRM_1 RNA recognition motif 0.11 12.7 1.6 0.24 11.6 1.6 1.5 1 zf-C2H2_10 C2H2 zinc-finger 0.21 12.0 0.0 0.43 11.0 0.0 1.5 1 RRM_7 RNA recognition motif Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.08 1 28 [. 86 113 .. 86 117 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 EEEESETTTSSHHHHHHHHTTTSTEEEE CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiksi 28 +fV++Lp +++++++k F+ fG + s+ FUN_000030-T1 86 VFVRDLPVELSDDDVKCAFESFGVVHSV 113 8***********************9876 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 3e-05 0.24 4 15 .. 159 170 .. 158 174 .. 0.87 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3e-05 zf-C2H2_10 4 itCSYChetGHt 15 ++CS Che GH FUN_000030-T1 159 VQCSICHEFGHQ 170 68*********5 PP >> RRM_7 RNA recognition motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 5.2e-05 0.43 3 28 .. 85 110 .. 83 115 .. 0.92 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.2e-05 RRM_7 3 kvfvGGlPiDiteeeltatfkafGkl 28 vfv lP+++++++++ +f++fG + FUN_000030-T1 85 PVFVRDLPVELSDDDVKCAFESFGVV 110 69**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 619 (0.0250243); expected 494.7 (0.02) Passed bias filter: 508 (0.0205369); expected 494.7 (0.02) Passed Vit filter: 45 (0.00181921); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.34 # Mc/sec: 2749.84 // Query: FUN_000031-T1 [L=92] Description: FUN_000031 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (92 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 486 (0.0196475); expected 494.7 (0.02) Passed bias filter: 215 (0.00869179); expected 494.7 (0.02) Passed Vit filter: 13 (0.00052555); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35 # Mc/sec: 1028.29 // Query: FUN_000032-T1 [L=815] Description: FUN_000032 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.46 11.0 2.7 1e+02 3.5 0.1 3.4 3 Zn_ribbon_8 Zinc ribbon domain Domain annotation for each model (and alignments): >> Zn_ribbon_8 Zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 0.1 0.0041 1e+02 18 35 .. 65 82 .. 63 85 .. 0.81 2 ? 1.7 0.1 0.015 3.6e+02 18 35 .. 94 111 .. 91 114 .. 0.80 3 ? 3.5 0.1 0.0042 1e+02 18 34 .. 123 139 .. 120 143 .. 0.81 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.0041 Zn_ribbon_8 18 lqkmsdapltaCPeCgsg 35 +++ +++plt+CP+ ++ FUN_000032-T1 65 FHRKHEPPLTPCPRTSQE 82 677889*******99774 PP == domain 2 score: 1.7 bits; conditional E-value: 0.015 Zn_ribbon_8 18 lqkmsdapltaCPeCgsg 35 +++ +++pl +CP+ ++ FUN_000032-T1 94 FHRKHEPPLIPCPRTSQE 111 67778999999**99774 PP == domain 3 score: 3.5 bits; conditional E-value: 0.0042 Zn_ribbon_8 18 lqkmsdapltaCPeCgs 34 +++ +++plt+CP+ + FUN_000032-T1 123 FHRKHEPPLTPCPRTSQ 139 677789*******9977 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (815 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 979 (0.0395779); expected 494.7 (0.02) Passed bias filter: 721 (0.0291478); expected 494.7 (0.02) Passed Vit filter: 61 (0.00246604); expected 24.7 (0.001) Passed Fwd filter: 1 (4.04269e-05); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.38 # Mc/sec: 8500.91 // Query: FUN_000033-T1 [L=779] Description: FUN_000033 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-07 30.6 0.0 0.02 15.8 0.0 2.9 3 SET SET domain ------ inclusion threshold ------ 0.029 14.6 0.0 0.06 13.5 0.0 1.5 1 PRDM2_PR PR domain zinc finger protein 2, PR domain 0.12 13.1 0.1 7.2 7.3 0.0 2.6 2 DUF5371 Family of unknown function (DUF5371) Domain annotation for each model (and alignments): >> SET SET domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.0 1.4 1.1e+04 10 43 .. 220 259 .. 214 328 .. 0.45 2 ! 12.5 0.0 2.5e-05 0.2 1 31 [. 669 697 .. 669 705 .. 0.81 3 ! 15.8 0.0 2.4e-06 0.02 65 104 .. 704 737 .. 690 738 .. 0.75 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 1.4 B-TTEEEEEEE..EEEEEEHHHHHHHHHH.....HCEEEEE CS xxxxxxxxxxx..xxxxxxxxxxxxxxxx.....xxxxxxx RF SET 10 ikkgelileyv..eklliteeeaeereee.....eylftld 43 + ge++ + e+ ++e+++r++ + l+tld FUN_000033-T1 220 FSIGEFMS-TCikEHGSTLPDEDHQRRRGrprvsSLLDTLD 259 55666663.33354334444444444433466663333333 PP == domain 2 score: 12.5 bits; conditional E-value: 2.5e-05 SEEEEESS-B-TTEEEEEEEEEEEEEHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SET 1 GrGlfAtedikkgelileyveklliteeeae 31 G+Glf+ ++i++g+l++ y++ t +ea+ FUN_000033-T1 669 GLGLFTLKKIPRGTLVCAYAP--TATIWEAR 697 89******************8..55555544 PP == domain 3 score: 15.8 bits; conditional E-value: 2.4e-06 CEE.SSTSEEEEEEECTTSTEEEEEESS-B-TTEEEEEES CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SET 65 iNHscepncevrvevvngekrivvfalrdIkkgeEltidY 104 i H + nc ++++ ++ i++++ rd+++geEl+++Y FUN_000033-T1 704 ISH--RVNC-EYCK---CGDGIWLKTVRDVSAGEELLMCY 737 445..4688.4444...59********************* PP >> PRDM2_PR PR domain zinc finger protein 2, PR domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 7.3e-06 0.06 83 115 .. 708 740 .. 702 747 .. 0.90 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 7.3e-06 --EEEEEETTEEEEEESS-B-TT-B-EEEE-TT CS PRDM2_PR 83 qNLvavqhkgeiYyrtikdIepgeeLlvwysee 115 N +++++ i+ +t++d+++geeLl++ys++ FUN_000033-T1 708 VNCEYCKCGDGIWLKTVRDVSAGEELLMCYSQD 740 69999*************************987 PP >> DUF5371 Family of unknown function (DUF5371) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.025 2e+02 6 31 .. 587 612 .. 585 621 .. 0.88 2 ? 7.3 0.0 0.00087 7.2 33 58 .. 701 726 .. 695 729 .. 0.86 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.025 DUF5371 6 HAqtvLpeedLeeLkkkcgesstkdA 31 H Lp ++ + Lk+ c + +t+ A FUN_000033-T1 587 HSNAFLPWHERQMLKQLCSQETTRTA 612 88899******************987 PP == domain 2 score: 7.3 bits; conditional E-value: 0.00087 DUF5371 33 siAveHYLeCeYtdlgedmwtkklEe 58 s + H ++CeY + g+ w k + FUN_000033-T1 701 SNVISHRVNCEYCKCGDGIWLKTVRD 726 77899***************998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 750 (0.0303202); expected 494.7 (0.02) Passed bias filter: 663 (0.026803); expected 494.7 (0.02) Passed Vit filter: 50 (0.00202135); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.64u 0.22s 00:00:00.86 Elapsed: 00:00:00.36 # Mc/sec: 8541.59 // Query: FUN_000034-T1 [L=507] Description: FUN_000034 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.9 9.0 4.8 1 10.5 1.8 1.8 2 DUF4404 Domain of unknown function (DUF4404) Domain annotation for each model (and alignments): >> DUF4404 Domain of unknown function (DUF4404) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.1 1 2.5e+04 17 34 .. 84 101 .. 82 115 .. 0.70 2 ? 10.5 1.8 4.2e-05 1 4 60 .. 239 296 .. 237 300 .. 0.89 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 1 DUF4404 17 sldeetrakLeelaedie 34 s+de+++ +L++ +d e FUN_000034-T1 84 SADEDQEPELSNSSSDSE 101 678888888877766655 PP == domain 2 score: 10.5 bits; conditional E-value: 4.2e-05 DUF4404 4 lLekLheeLeedesldeetrakLeela.edieellaeedaaaeekelvdrlneaverF 60 +L++L++ L+++++ d + +a+ ++ + e+iee+ ++ + ++ e++++ +++e ++ F FUN_000034-T1 239 SLNRLEQFLRNNQPCDPQRAAQATAEDrESIEEARQRASRNSYEEQRAQQVQEKIKDF 296 799****************99988776167**************99********9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (507 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 2021 (0.0817028); expected 494.7 (0.02) Passed bias filter: 799 (0.0323011); expected 494.7 (0.02) Passed Vit filter: 63 (0.0025469); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.35 # Mc/sec: 5661.19 // Query: FUN_000035-T1 [L=702] Description: FUN_000035 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-06 26.2 0.0 2.2e-05 24.8 0.0 1.7 1 Phage_integrase Phage integrase family ------ inclusion threshold ------ 0.14 13.1 0.0 1.4 9.9 0.0 2.3 2 DUF1214 Protein of unknown function (DUF1214) 0.66 10.7 3.1 1.2 10.0 0.1 2.9 2 Phage_int_SAM_1 Phage integrase, N-terminal SAM-like domain 0.73 9.9 8.2 0.037 14.1 2.0 2.0 2 MVD-like_N Diphosphomevalonate decarboxylase-like N-ter Domain annotation for each model (and alignments): >> Phage_integrase Phage integrase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.8 0.0 3.5e-09 2.2e-05 56 142 .. 443 537 .. 432 568 .. 0.84 Alignments for each domain: == domain 1 score: 24.8 bits; conditional E-value: 3.5e-09 EEE...EECSSSSEEEEECT..HHHHHHHHHHHHHH....HHTTTTTSBSSBETTSSB-THHHHHHHHHHHHHHTT-SSC--CCHHHHHHHHHH CS Phage_integrase 56 vrv...ergKgnkertvpls..eealellkellskr....lkeaeesealFlskkgkplsrqtvkkafkrlvkeagleerlhpHelRhsfatrL 140 ++v + +K + tvp++ +e+++ +++++++ ++++e++++lF++ +g+p s ++++k +k+l ++ +++ ++lR sf t+ FUN_000035-T1 443 IYVqnyKTSKFAGSDTVPIQadSELCSFFRKYVQEFrpelSSAQEKNDFLFVNANGQPYSGSSFSKHLKNLMIRLTGR-EVSINTLRSSFLTWA 535 455444445555679*****9999********9999999999******************************995555.6************96 PP HH CS Phage_integrase 141 le 142 + FUN_000035-T1 536 YS 537 65 PP >> DUF1214 Protein of unknown function (DUF1214) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.0 0.29 1.8e+03 49 88 .. 114 153 .. 103 156 .. 0.73 2 ? 9.9 0.0 0.00023 1.4 58 108 .. 426 474 .. 406 477 .. 0.84 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.29 B---TTS--EEETTS-....BTTTSEEEEEEESS-TTTST CS DUF1214 49 lvpneldrysigsrtlkglkkneDGsltiylspeapegkk 88 +ne r + s +l+ + +++ +s iy+sp+++++++ FUN_000035-T1 114 EQDNEFSRLPLLSDDLEIMAASTAASASIYVSPSSESEDQ 153 557777776666666678899999*********9986554 PP == domain 2 score: 9.9 bits; conditional E-value: 0.00023 EEETTS-....BTTTSEEEEEEESS-TTTST.TSEEE-TTT-BEEEEEEEE CS DUF1214 58 sigsrtlkglkkneDGsltiylspeapegkkeaNWLptpaggefelvlRlY 108 ++ +r++ + ++DG +tiy+++ + ++ +++ +p++a+ e+ +R Y FUN_000035-T1 426 RFANRNV--ALLQKDGGITIYVQNYKTSKFAGSDTVPIQADSELCSFFRKY 474 5566664..4689**************999**********99999999988 PP >> Phage_int_SAM_1 Phage integrase, N-terminal SAM-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.1 0.00019 1.2 1 32 [. 280 311 .. 280 343 .. 0.87 2 ? -0.8 0.5 0.44 2.7e+03 29 69 .. 531 568 .. 520 578 .. 0.71 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00019 HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHH CS Phage_int_SAM_1 1 ieqfleyLslerglSenTvraYrrdLkaflkf 32 +e++l++L+ rglS T+ ++++ L lk+ FUN_000035-T1 280 LESYLDHLKDHRGLSSATIANHASSLVYPLKY 311 689*******************9998665555 PP == domain 2 score: -0.8 bits; conditional E-value: 0.44 HHHHHHHTS--TTT--HHHHHHHHHS----------HHHHH CS Phage_int_SAM_1 29 flkflseegesleqittsdvraflaelkaeglsasslarrl 69 fl+++ + ++ +++ ++++a l++++++ ++s+ rr FUN_000035-T1 531 FLTWAYS-QSECTDSMKDSLAAALRHSREQ--AQSTYDRRT 568 4444444.7788888888889999998884..567766665 PP >> MVD-like_N Diphosphomevalonate decarboxylase-like N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 2.0 6e-06 0.037 80 122 .. 70 112 .. 24 122 .. 0.77 2 ? -3.7 0.1 1.8 1.1e+04 23 77 .. 546 561 .. 534 586 .. 0.51 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 6e-06 SSEEEEEEEEESSTTS-SSHHHHHHHHHHHHHHHHTT.TS-HH CS MVD-like_N 80 elkvrieSennfptaaGlASSasgfAalalalaklaglelsek 122 + +S+ + p +G ASS+sg+Aa+++a+ ++ + se+ FUN_000035-T1 70 DDAGPCASSSKRPRLSGSASSDSGIAAITTAAGPIYVASSSES 112 555567899999********************99988666554 PP == domain 2 score: -3.7 bits; conditional E-value: 1.8 S-EEEEEECTSEEEEEEEEETT.SS-EEEETTEEESHCCCHHHHHHHHHCHHHHC CS MVD-like_N 23 nsSlSltldelytkTtvefseeleedelvlngkeeegkeekrvqrvldevrklak 77 ++Sl +l+ + r++a+ FUN_000035-T1 546 KDSLAAALR---------------------------------------HSREQAQ 561 344444444.......................................3333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 715 (0.0289052); expected 494.7 (0.02) Passed bias filter: 492 (0.01989); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 5 (0.000202135); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.36 # Mc/sec: 7655.17 // Query: FUN_000036-T1 [L=697] Description: FUN_000036 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.57 11.3 1.8 1.6 9.9 1.8 1.8 1 DUF4404 Domain of unknown function (DUF4404) Domain annotation for each model (and alignments): >> DUF4404 Domain of unknown function (DUF4404) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 1.8 6.5e-05 1.6 4 60 .. 429 486 .. 427 490 .. 0.89 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 6.5e-05 DUF4404 4 lLekLheeLeedesldeetrakLeela.edieellaeedaaaeekelvdrlneaverF 60 +L++L++ L+++++ d + +a+ ++ + e+iee+ ++ + ++ e++++ +++e ++ F FUN_000036-T1 429 SLNRLEQFLRNNQPCDPQRAAQATAEDrESIEEARQRASRNSYEEQRAQQVQEKIKDF 486 799****************99988776167**************99********9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (697 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 1490 (0.0602361); expected 494.7 (0.02) Passed bias filter: 635 (0.0256711); expected 494.7 (0.02) Passed Vit filter: 51 (0.00206177); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.35 # Mc/sec: 7915.74 // Query: FUN_000037-T1 [L=603] Description: FUN_000037 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.53 11.0 3.3 1.1 10.0 0.0 3.1 3 Phage_int_SAM_1 Phage integrase, N-terminal SAM-like domain Domain annotation for each model (and alignments): >> Phage_int_SAM_1 Phage integrase, N-terminal SAM-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.1 0.14 3.4e+03 53 70 .. 18 35 .. 10 36 .. 0.71 2 ? -2.4 0.1 0.33 8e+03 38 70 .. 105 139 .. 99 142 .. 0.67 3 ? 10.0 0.0 4.4e-05 1.1 1 30 [. 255 284 .. 255 299 .. 0.85 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.14 HS----------HHHHHH CS Phage_int_SAM_1 53 aelkaeglsasslarrlS 70 ++++g +a++++r+ S FUN_000037-T1 18 LNRQQRGIKATTANRTAS 35 45666799******9866 PP == domain 2 score: -2.4 bits; conditional E-value: 0.33 --TTT--HHHHHHHHHS-----..-----HHHHHH CS Phage_int_SAM_1 38 esleqittsdvraflaelkaeg..lsasslarrlS 70 +s++q+++ + +++ ++++ s++s + rlS FUN_000037-T1 105 KSWQQVQRLVPSIYVSPSSESEdqDSEASRRSRLS 139 67888888777778777776654456666666666 PP == domain 3 score: 10.0 bits; conditional E-value: 4.4e-05 HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH CS Phage_int_SAM_1 1 ieqfleyLslerglSenTvraYrrdLkafl 30 +e++l++L+ rglS T+ ++++ L l FUN_000037-T1 255 LESYLDHLKDHRGLSSATIANHASSLVYPL 284 689*******************99986555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (603 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 704 (0.0284605); expected 494.7 (0.02) Passed bias filter: 528 (0.0213454); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 1 (4.04269e-05); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.36 # Mc/sec: 6551.78 // Query: FUN_000038-T1 [L=252] Description: FUN_000038 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.22 11.9 4.6 0.37 11.2 2.1 2.3 2 VWC2L_1st VWC2L-like, N-terminal domain Domain annotation for each model (and alignments): >> VWC2L_1st VWC2L-like, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.0 0.043 1.1e+03 20 27 .. 45 52 .. 38 56 .. 0.69 2 ? 11.2 2.1 1.5e-05 0.37 22 32 .. 66 77 .. 63 87 .. 0.86 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 0.043 VWC2L_1st 20 spsaCpCt 27 s+ +C+C+ FUN_000038-T1 45 SQAECTCL 52 55678885 PP == domain 2 score: 11.2 bits; conditional E-value: 1.5e-05 VWC2L_1st 22 saCp.CtCTedG 32 ++Cp C CTe+G FUN_000038-T1 66 QNCPyCICTEEG 77 79*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (252 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 1758 (0.0710705); expected 494.7 (0.02) Passed bias filter: 893 (0.0361012); expected 494.7 (0.02) Passed Vit filter: 57 (0.00230433); expected 24.7 (0.001) Passed Fwd filter: 1 (4.04269e-05); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.35 # Mc/sec: 2817.58 // Query: FUN_000039-T1 [L=247] Description: FUN_000039 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (247 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 1352 (0.0546572); expected 494.7 (0.02) Passed bias filter: 650 (0.0262775); expected 494.7 (0.02) Passed Vit filter: 58 (0.00234476); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.39 # Mc/sec: 2516.53 // Query: FUN_000040-T1 [L=702] Description: FUN_000040 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-06 26.2 0.0 2.2e-05 24.8 0.0 1.7 1 Phage_integrase Phage integrase family ------ inclusion threshold ------ 0.14 13.1 0.0 1.4 9.9 0.0 2.3 2 DUF1214 Protein of unknown function (DUF1214) 0.66 10.7 3.1 1.2 10.0 0.1 2.9 2 Phage_int_SAM_1 Phage integrase, N-terminal SAM-like domain 0.73 9.9 8.2 0.037 14.1 2.0 2.0 2 MVD-like_N Diphosphomevalonate decarboxylase-like N-ter Domain annotation for each model (and alignments): >> Phage_integrase Phage integrase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.8 0.0 3.5e-09 2.2e-05 56 142 .. 443 537 .. 432 568 .. 0.84 Alignments for each domain: == domain 1 score: 24.8 bits; conditional E-value: 3.5e-09 EEE...EECSSSSEEEEECT..HHHHHHHHHHHHHH....HHTTTTTSBSSBETTSSB-THHHHHHHHHHHHHHTT-SSC--CCHHHHHHHHHH CS Phage_integrase 56 vrv...ergKgnkertvpls..eealellkellskr....lkeaeesealFlskkgkplsrqtvkkafkrlvkeagleerlhpHelRhsfatrL 140 ++v + +K + tvp++ +e+++ +++++++ ++++e++++lF++ +g+p s ++++k +k+l ++ +++ ++lR sf t+ FUN_000040-T1 443 IYVqnyKTSKFAGSDTVPIQadSELCSFFRKYVQEFrpelSSAQEKNDFLFVNANGQPYSGSSFSKHLKNLMIRLTGR-EVSINTLRSSFLTWA 535 455444445555679*****9999********9999999999******************************995555.6************96 PP HH CS Phage_integrase 141 le 142 + FUN_000040-T1 536 YS 537 65 PP >> DUF1214 Protein of unknown function (DUF1214) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.0 0.29 1.8e+03 49 88 .. 114 153 .. 103 156 .. 0.73 2 ? 9.9 0.0 0.00023 1.4 58 108 .. 426 474 .. 406 477 .. 0.84 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.29 B---TTS--EEETTS-....BTTTSEEEEEEESS-TTTST CS DUF1214 49 lvpneldrysigsrtlkglkkneDGsltiylspeapegkk 88 +ne r + s +l+ + +++ +s iy+sp+++++++ FUN_000040-T1 114 EQDNEFSRLPLLSDDLEIMAASTAASASIYVSPSSESEDQ 153 557777776666666678899999*********9986554 PP == domain 2 score: 9.9 bits; conditional E-value: 0.00023 EEETTS-....BTTTSEEEEEEESS-TTTST.TSEEE-TTT-BEEEEEEEE CS DUF1214 58 sigsrtlkglkkneDGsltiylspeapegkkeaNWLptpaggefelvlRlY 108 ++ +r++ + ++DG +tiy+++ + ++ +++ +p++a+ e+ +R Y FUN_000040-T1 426 RFANRNV--ALLQKDGGITIYVQNYKTSKFAGSDTVPIQADSELCSFFRKY 474 5566664..4689**************999**********99999999988 PP >> Phage_int_SAM_1 Phage integrase, N-terminal SAM-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.1 0.00019 1.2 1 32 [. 280 311 .. 280 343 .. 0.87 2 ? -0.8 0.5 0.44 2.7e+03 29 69 .. 531 568 .. 520 578 .. 0.71 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00019 HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHH CS Phage_int_SAM_1 1 ieqfleyLslerglSenTvraYrrdLkaflkf 32 +e++l++L+ rglS T+ ++++ L lk+ FUN_000040-T1 280 LESYLDHLKDHRGLSSATIANHASSLVYPLKY 311 689*******************9998665555 PP == domain 2 score: -0.8 bits; conditional E-value: 0.44 HHHHHHHTS--TTT--HHHHHHHHHS----------HHHHH CS Phage_int_SAM_1 29 flkflseegesleqittsdvraflaelkaeglsasslarrl 69 fl+++ + ++ +++ ++++a l++++++ ++s+ rr FUN_000040-T1 531 FLTWAYS-QSECTDSMKDSLAAALRHSREQ--AQSTYDRRT 568 4444444.7788888888889999998884..567766665 PP >> MVD-like_N Diphosphomevalonate decarboxylase-like N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 2.0 6e-06 0.037 80 122 .. 70 112 .. 24 122 .. 0.77 2 ? -3.7 0.1 1.8 1.1e+04 23 77 .. 546 561 .. 534 586 .. 0.51 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 6e-06 SSEEEEEEEEESSTTS-SSHHHHHHHHHHHHHHHHTT.TS-HH CS MVD-like_N 80 elkvrieSennfptaaGlASSasgfAalalalaklaglelsek 122 + +S+ + p +G ASS+sg+Aa+++a+ ++ + se+ FUN_000040-T1 70 DDAGPCASSSKRPRLSGSASSDSGIAAITTAAGPIYVASSSES 112 555567899999********************99988666554 PP == domain 2 score: -3.7 bits; conditional E-value: 1.8 S-EEEEEECTSEEEEEEEEETT.SS-EEEETTEEESHCCCHHHHHHHHHCHHHHC CS MVD-like_N 23 nsSlSltldelytkTtvefseeleedelvlngkeeegkeekrvqrvldevrklak 77 ++Sl +l+ + r++a+ FUN_000040-T1 546 KDSLAAALR---------------------------------------HSREQAQ 561 344444444.......................................3333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 715 (0.0289052); expected 494.7 (0.02) Passed bias filter: 492 (0.01989); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 5 (0.000202135); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.37 # Mc/sec: 7410.95 // Query: FUN_000041-T1 [L=507] Description: FUN_000041 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.9 9.0 4.8 1 10.5 1.8 1.8 2 DUF4404 Domain of unknown function (DUF4404) Domain annotation for each model (and alignments): >> DUF4404 Domain of unknown function (DUF4404) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.1 1 2.5e+04 17 34 .. 84 101 .. 82 115 .. 0.70 2 ? 10.5 1.8 4.2e-05 1 4 60 .. 239 296 .. 237 300 .. 0.89 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 1 DUF4404 17 sldeetrakLeelaedie 34 s+de+++ +L++ +d e FUN_000041-T1 84 SADEDQEPELSNSSSDSE 101 678888888877766655 PP == domain 2 score: 10.5 bits; conditional E-value: 4.2e-05 DUF4404 4 lLekLheeLeedesldeetrakLeela.edieellaeedaaaeekelvdrlneaverF 60 +L++L++ L+++++ d + +a+ ++ + e+iee+ ++ + ++ e++++ +++e ++ F FUN_000041-T1 239 SLNRLEQFLRNNQPCDPQRAAQATAEDrESIEEARQRASRNSYEEQRAQQVQEKIKDF 296 799****************99988776167**************99********9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (507 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 2021 (0.0817028); expected 494.7 (0.02) Passed bias filter: 799 (0.0323011); expected 494.7 (0.02) Passed Vit filter: 63 (0.0025469); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.38 # Mc/sec: 5293.15 // Query: FUN_000042-T1 [L=264] Description: FUN_000042 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.4 7.8 0.097 12.8 5.8 1.8 2 MVD-like_N Diphosphomevalonate decarboxylase-like N-terminal Domain annotation for each model (and alignments): >> MVD-like_N Diphosphomevalonate decarboxylase-like N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 5.8 3.9e-06 0.097 79 122 .. 69 112 .. 22 141 .. 0.77 2 ? -1.6 0.5 0.1 2.5e+03 98 113 .. 133 148 .. 122 171 .. 0.57 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 3.9e-06 SSSEEEEEEEEESSTTS-SSHHHHHHHHHHHHHHHHTT.TS-HH CS MVD-like_N 79 selkvrieSennfptaaGlASSasgfAalalalaklaglelsek 122 s+ +S+ + p +G ASS+sg+Aa+++a+ ++ + se+ FUN_000042-T1 69 SDDAGPCASSSKRPRLSGSASSDSGIAAITTAAGPIYVASSSES 112 4566667899999********************99988666544 PP == domain 2 score: -1.6 bits; conditional E-value: 0.1 SHHHHHHHHHHHHHHH CS MVD-like_N 98 ASSasgfAalalalak 113 A S ++ A++ ++ ++ FUN_000042-T1 133 AASTAASASIYVSPSS 148 4455555555444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (264 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 776 (0.0313713); expected 494.7 (0.02) Passed bias filter: 480 (0.0194049); expected 494.7 (0.02) Passed Vit filter: 22 (0.000889392); expected 24.7 (0.001) Passed Fwd filter: 2 (8.08538e-05); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.35 # Mc/sec: 2919.17 // Query: FUN_000043-T1 [L=347] Description: FUN_000043 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-06 27.6 0.0 6e-06 26.6 0.0 1.5 1 Phage_integrase Phage integrase family ------ inclusion threshold ------ 0.21 12.5 0.0 0.47 11.4 0.0 1.6 1 DUF1214 Protein of unknown function (DUF1214) Domain annotation for each model (and alignments): >> Phage_integrase Phage integrase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 0.0 4.9e-10 6e-06 56 142 .. 88 182 .. 76 214 .. 0.83 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 4.9e-10 EEE...EECSSSSEEEEECT..HHHHHHHHHHHHHH....HHTTTTTSBSSBETTSSB-THHHHHHHHHHHHHHTT-SSC--CCHHHHHHHHHH CS Phage_integrase 56 vrv...ergKgnkertvpls..eealellkellskr....lkeaeesealFlskkgkplsrqtvkkafkrlvkeagleerlhpHelRhsfatrL 140 ++v + +K + tvp++ +e+++ +++++++ ++++e++++lF++ +g+p s ++++k +k+l ++ +++ ++lR sf t+ FUN_000043-T1 88 IYVqnyKTSKFAGSDTVPIQadSELCSFFRKYVQEFrpelSSAQEKNDFLFVNANGQPYSGSSFSKHLKNLMIRLTGR-EVSINTLRSSFLTWA 180 455444445555679*****9999********9999999999******************************995555.6************97 PP HH CS Phage_integrase 141 le 142 + FUN_000043-T1 181 YS 182 65 PP >> DUF1214 Protein of unknown function (DUF1214) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 3.8e-05 0.47 57 108 .. 70 119 .. 31 122 .. 0.87 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 3.8e-05 -EEETTS-....BTTTSEEEEEEESS-TTTST.TSEEE-TTT-BEEEEEEEE CS DUF1214 57 ysigsrtlkglkkneDGsltiylspeapegkkeaNWLptpaggefelvlRlY 108 ++ +r++ + ++DG +tiy+++ + ++ +++ +p++a+ e+ +R Y FUN_000043-T1 70 ARFANRNV--ALLQKDGGITIYVQNYKTSKFAGSDTVPIQADSELCSFFRKY 119 55666664..4689**************999**********99999999988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (347 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 760 (0.0307245); expected 494.7 (0.02) Passed bias filter: 552 (0.0223157); expected 494.7 (0.02) Passed Vit filter: 37 (0.0014958); expected 24.7 (0.001) Passed Fwd filter: 2 (8.08538e-05); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.33 # Mc/sec: 4092.22 // Query: FUN_000044-T1 [L=507] Description: FUN_000044 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.9 9.0 4.8 1 10.5 1.8 1.8 2 DUF4404 Domain of unknown function (DUF4404) Domain annotation for each model (and alignments): >> DUF4404 Domain of unknown function (DUF4404) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.1 1 2.5e+04 17 34 .. 84 101 .. 82 115 .. 0.70 2 ? 10.5 1.8 4.2e-05 1 4 60 .. 239 296 .. 237 300 .. 0.89 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 1 DUF4404 17 sldeetrakLeelaedie 34 s+de+++ +L++ +d e FUN_000044-T1 84 SADEDQEPELSNSSSDSE 101 678888888877766655 PP == domain 2 score: 10.5 bits; conditional E-value: 4.2e-05 DUF4404 4 lLekLheeLeedesldeetrakLeela.edieellaeedaaaeekelvdrlneaverF 60 +L++L++ L+++++ d + +a+ ++ + e+iee+ ++ + ++ e++++ +++e ++ F FUN_000044-T1 239 SLNRLEQFLRNNQPCDPQRAAQATAEDrESIEEARQRASRNSYEEQRAQQVQEKIKDF 296 799****************99988776167**************99********9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (507 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 2021 (0.0817028); expected 494.7 (0.02) Passed bias filter: 799 (0.0323011); expected 494.7 (0.02) Passed Vit filter: 63 (0.0025469); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.33 # Mc/sec: 5937.99 // Query: FUN_000045-T1 [L=359] Description: FUN_000045 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.098 12.7 6.6 0.19 11.8 6.1 1.8 2 MVD-like_N Diphosphomevalonate decarboxylase-like N-ter 0.15 12.8 0.0 0.48 11.2 0.0 1.9 1 Phage_int_SAM_1 Phage integrase, N-terminal SAM-like domain Domain annotation for each model (and alignments): >> MVD-like_N Diphosphomevalonate decarboxylase-like N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 6.1 1.5e-05 0.19 79 122 .. 69 112 .. 23 159 .. 0.79 2 ? -1.9 0.2 0.26 3.2e+03 98 113 .. 133 148 .. 124 171 .. 0.56 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 1.5e-05 SSSEEEEEEEEESSTTS-SSHHHHHHHHHHHHHHHHTT.TS-HH CS MVD-like_N 79 selkvrieSennfptaaGlASSasgfAalalalaklaglelsek 122 s+ +S+ + p +G ASS+sg+Aa+++a+ ++ + se+ FUN_000045-T1 69 SDDAGPCASSSKRPRLSGSASSDSGIAAITTAAGPIYVASSSES 112 4555667899999********************99988665544 PP == domain 2 score: -1.9 bits; conditional E-value: 0.26 SHHHHHHHHHHHHHHH CS MVD-like_N 98 ASSasgfAalalalak 113 A S ++ A++ ++ ++ FUN_000045-T1 133 AASTAASASIYVSPSS 148 4555555555444443 PP >> Phage_int_SAM_1 Phage integrase, N-terminal SAM-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 3.9e-05 0.48 1 32 [. 280 311 .. 280 340 .. 0.86 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 3.9e-05 HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHH CS Phage_int_SAM_1 1 ieqfleyLslerglSenTvraYrrdLkaflkf 32 +e++l++L+ rglS T+ ++++ L lk+ FUN_000045-T1 280 LESYLDHLKDHRGLSSATIANHASSLVYPLKY 311 689*******************9998665555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (359 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 565 (0.0228412); expected 494.7 (0.02) Passed bias filter: 381 (0.0154027); expected 494.7 (0.02) Passed Vit filter: 21 (0.000848965); expected 24.7 (0.001) Passed Fwd filter: 2 (8.08538e-05); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.33 # Mc/sec: 4237.15 // Query: FUN_000046-T1 [L=126] Description: FUN_000046 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-21 74.1 1.7 1.3e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.5e-15 57.2 0.0 3.2e-15 56.9 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 1.9e-05 25.3 0.0 2.6e-05 24.8 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.6e-24 1.3e-20 1 34 [. 92 125 .. 92 126 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.6e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000046-T1 92 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 125 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.9 0.0 3.9e-19 3.2e-15 42 120 .. 12 89 .. 5 91 .. 0.94 Alignments for each domain: == domain 1 score: 56.9 bits; conditional E-value: 3.9e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000046-T1 12 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 89 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.8 0.0 3.2e-09 2.6e-05 2 65 .] 25 88 .. 24 88 .. 0.98 Alignments for each domain: == domain 1 score: 24.8 bits; conditional E-value: 3.2e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000046-T1 25 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 88 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (126 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 492 (0.01989); expected 494.7 (0.02) Passed bias filter: 413 (0.0166963); expected 494.7 (0.02) Passed Vit filter: 33 (0.00133409); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.33 # Mc/sec: 1493.79 // Query: FUN_000047-T1 [L=139] Description: FUN_000047 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000047-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000047-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000047-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000047-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000047-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000047-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000047-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000047-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000047-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000047-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.34 # Mc/sec: 1586.57 // Query: FUN_000048-T1 [L=181] Description: FUN_000048 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-21 75.6 1.2 6.3e-21 75.3 1.2 1.2 1 Histone Core histone H2A/H2B/H3/H4 0.0018 18.9 0.0 0.0056 17.4 0.0 1.8 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) ------ inclusion threshold ------ 0.014 15.8 0.1 0.019 15.4 0.1 1.1 1 ARM_TT21 Tetratricopeptide repeat protein 21 ARM repe 0.096 13.1 0.1 0.18 12.2 0.1 1.4 1 RNase_P-MRP_p29 Ribonuclease P/MRP, subunit p29 Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.3 1.2 1e-24 6.3e-21 21 121 .. 60 156 .. 19 157 .. 0.91 Alignments for each domain: == domain 1 score: 75.3 bits; conditional E-value: 1e-24 .SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHH CS Histone 21 sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiq 116 + + +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq FUN_000048-T1 60 KVAAAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQ 151 67788999999************************************....********************************************* PP HHHHH CS Histone 117 lAvrl 121 +A+rl FUN_000048-T1 152 TAIRL 156 ****8 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 0.0 9.1e-07 0.0056 8 65 .] 97 154 .. 96 154 .. 0.95 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 9.1e-07 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000048-T1 97 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 154 679*****88888.*****************************************9996 PP >> ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.4 0.1 3e-06 0.019 41 117 .. 79 157 .. 51 161 .. 0.73 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 3e-06 ARM_TT21 41 kskekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000048-T1 79 AETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 157 2222333345566777889999*******************98765266656788**********************98 PP >> RNase_P-MRP_p29 Ribonuclease P/MRP, subunit p29 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.1 2.9e-05 0.18 25 55 .. 46 76 .. 37 95 .. 0.91 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 2.9e-05 TEEEEEEEEETTEEEEEECTTEEEEEESTTE CS RNase_P-MRP_p29 25 GikGivvdEtkntlkivtkenkvktipKegs 55 i+G++ +Et+ +lk++ ++ k++ K++s FUN_000048-T1 46 RISGLIYEETRGVLKVAAAKKGEKRVGKAKS 76 689************************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (181 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 686 (0.0277329); expected 494.7 (0.02) Passed bias filter: 433 (0.0175049); expected 494.7 (0.02) Passed Vit filter: 33 (0.00133409); expected 24.7 (0.001) Passed Fwd filter: 4 (0.000161708); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.34 # Mc/sec: 2090.53 // Query: FUN_000049-T1 [L=164] Description: FUN_000049 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000049-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000049-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000049-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000049-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.34 # Mc/sec: 1868.04 // Query: FUN_000050-T1 [L=129] Description: FUN_000050 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000050-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000050-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000050-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.32 # Mc/sec: 1579.29 // Query: FUN_000051-T1 [L=164] Description: FUN_000051 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000051-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000051-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000051-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000051-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.36 # Mc/sec: 1807.56 // Query: FUN_000052-T1 [L=129] Description: FUN_000052 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000052-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000052-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000052-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.33 # Mc/sec: 1550.59 // Query: FUN_000053-T1 [L=164] Description: FUN_000053 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000053-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000053-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000053-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000053-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.33 # Mc/sec: 1935.36 // Query: FUN_000054-T1 [L=129] Description: FUN_000054 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000054-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000054-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000054-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.31 # Mc/sec: 1605.53 // Query: FUN_000055-T1 [L=164] Description: FUN_000055 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000055-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000055-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000055-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000055-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.33 # Mc/sec: 1963.45 // Query: FUN_000056-T1 [L=129] Description: FUN_000056 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000056-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000056-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000056-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.34 # Mc/sec: 1487.21 // Query: FUN_000057-T1 [L=164] Description: FUN_000057 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000057-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000057-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000057-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000057-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.34 # Mc/sec: 1912.54 // Query: FUN_000058-T1 [L=129] Description: FUN_000058 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000058-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000058-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000058-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.32 # Mc/sec: 1582.89 // Query: FUN_000059-T1 [L=164] Description: FUN_000059 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000059-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000059-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000059-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000059-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.33 # Mc/sec: 1968.19 // Query: FUN_000060-T1 [L=129] Description: FUN_000060 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000060-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000060-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000060-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.32 # Mc/sec: 1584.98 // Query: FUN_000061-T1 [L=164] Description: FUN_000061 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000061-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000061-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000061-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000061-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.33 # Mc/sec: 1946.20 // Query: FUN_000062-T1 [L=129] Description: FUN_000062 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000062-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000062-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000062-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.33 # Mc/sec: 1518.43 // Query: FUN_000063-T1 [L=164] Description: FUN_000063 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000063-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000063-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000063-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000063-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.35 # Mc/sec: 1826.53 // Query: FUN_000064-T1 [L=129] Description: FUN_000064 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000064-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000064-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000064-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.32 # Mc/sec: 1567.12 // Query: FUN_000065-T1 [L=139] Description: FUN_000065 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000065-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000065-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000065-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000065-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000065-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000065-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000065-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000065-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000065-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000065-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.33 # Mc/sec: 1672.38 // Query: FUN_000066-T1 [L=181] Description: FUN_000066 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-21 75.6 1.2 6.3e-21 75.3 1.2 1.2 1 Histone Core histone H2A/H2B/H3/H4 0.0018 18.9 0.0 0.0056 17.4 0.0 1.8 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) ------ inclusion threshold ------ 0.014 15.8 0.1 0.019 15.4 0.1 1.1 1 ARM_TT21 Tetratricopeptide repeat protein 21 ARM repe 0.096 13.1 0.1 0.18 12.2 0.1 1.4 1 RNase_P-MRP_p29 Ribonuclease P/MRP, subunit p29 Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.3 1.2 1e-24 6.3e-21 21 121 .. 60 156 .. 19 157 .. 0.91 Alignments for each domain: == domain 1 score: 75.3 bits; conditional E-value: 1e-24 .SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHH CS Histone 21 sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiq 116 + + +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq FUN_000066-T1 60 KVAAAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQ 151 67788999999************************************....********************************************* PP HHHHH CS Histone 117 lAvrl 121 +A+rl FUN_000066-T1 152 TAIRL 156 ****8 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 0.0 9.1e-07 0.0056 8 65 .] 97 154 .. 96 154 .. 0.95 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 9.1e-07 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000066-T1 97 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 154 679*****88888.*****************************************9996 PP >> ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.4 0.1 3e-06 0.019 41 117 .. 79 157 .. 51 161 .. 0.73 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 3e-06 ARM_TT21 41 kskekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000066-T1 79 AETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 157 2222333345566777889999*******************98765266656788**********************98 PP >> RNase_P-MRP_p29 Ribonuclease P/MRP, subunit p29 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.1 2.9e-05 0.18 25 55 .. 46 76 .. 37 95 .. 0.91 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 2.9e-05 TEEEEEEEEETTEEEEEECTTEEEEEESTTE CS RNase_P-MRP_p29 25 GikGivvdEtkntlkivtkenkvktipKegs 55 i+G++ +Et+ +lk++ ++ k++ K++s FUN_000066-T1 46 RISGLIYEETRGVLKVAAAKKGEKRVGKAKS 76 689************************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (181 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 686 (0.0277329); expected 494.7 (0.02) Passed bias filter: 433 (0.0175049); expected 494.7 (0.02) Passed Vit filter: 33 (0.00133409); expected 24.7 (0.001) Passed Fwd filter: 4 (0.000161708); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.32 # Mc/sec: 2182.70 // Query: FUN_000067-T1 [L=164] Description: FUN_000067 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000067-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000067-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000067-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000067-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.35 # Mc/sec: 1836.14 // Query: FUN_000068-T1 [L=129] Description: FUN_000068 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000068-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000068-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000068-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.32 # Mc/sec: 1578.88 // Query: FUN_000069-T1 [L=238] Description: FUN_000069 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-63 213.3 0.5 6.7e-48 162.4 1.0 2.1 2 Histone Core histone H2A/H2B/H3/H4 1.7e-20 72.9 1.7 3.8e-20 71.8 1.7 1.7 1 Histone_H2A_C C-terminus of histone H2A 7.5e-10 39.4 0.0 0.00011 22.9 0.0 2.4 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y 0.00011 22.7 0.0 0.00027 21.4 0.0 1.7 1 CENP-T_C Centromere kinetochore component CENP-T his 0.00086 20.5 0.9 0.0013 19.9 0.9 1.3 1 PAF PCNA-associated factor histone like domain 0.0013 19.5 0.1 0.0039 18.0 0.0 1.7 2 CENP-S CENP-S protein ------ inclusion threshold ------ 0.024 15.2 0.1 0.23 12.0 0.0 2.2 2 TFIID-31kDa Transcription initiation factor IID, 31kD s 0.063 13.6 0.0 0.13 12.6 0.0 1.5 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 162.4 1.0 2.2e-51 6.7e-48 2 122 .] 7 132 .. 6 132 .. 0.97 2 ! 48.7 0.0 3.7e-16 1.1e-12 54 120 .. 136 201 .. 133 203 .. 0.95 Alignments for each domain: == domain 1 score: 162.4 bits; conditional E-value: 2.2e-51 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000069-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 102 68999***********99999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000069-T1 103 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 ****************************97 PP == domain 2 score: 48.7 bits; conditional E-value: 3.7e-16 SHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 54 qklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000069-T1 136 LQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 201 589**********8.88999**********************************************9 PP >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.8 1.7 1.2e-23 3.8e-20 1 34 [. 204 237 .. 204 238 .] 0.97 Alignments for each domain: == domain 1 score: 71.8 bits; conditional E-value: 1.2e-23 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000069-T1 204 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 237 9*******************************96 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 1.7e-05 0.052 2 64 .. 65 128 .. 64 128 .. 0.93 2 ! 22.9 0.0 3.4e-08 0.00011 2 65 .] 137 200 .. 136 200 .. 0.98 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 1.7e-05 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000069-T1 65 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 7888888887888889999******************************************998 PP == domain 2 score: 22.9 bits; conditional E-value: 3.4e-08 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000069-T1 137 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 200 69************************************************************98 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.0 8.8e-08 0.00027 14 76 .. 69 130 .. 59 149 .. 0.85 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 8.8e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000069-T1 69 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 130 466666666666889*****************************************86.4555 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.9 4.3e-07 0.0013 1 62 [. 1 58 [. 1 80 [. 0.90 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 4.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000069-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 58 99***998...9***************999999999988899999998.6999999999996 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.3e-06 0.0039 14 71 .. 71 130 .. 65 134 .. 0.83 2 ? -1.9 0.0 2 6.2e+03 53 76 .] 183 206 .. 160 206 .. 0.72 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.3e-06 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000069-T1 71 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 444433311666789999*************************************99876 PP == domain 2 score: -1.9 bits; conditional E-value: 2 CENP-S 53 AkHAkRstittdDvlLlaRrnesL 76 A+ k+s i + + L +R++e+L FUN_000069-T1 183 ARDNKKSRIIPRHLQLAVRNDEEL 206 455567777777888888887765 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 7.4e-05 0.23 23 70 .. 85 132 .. 69 148 .. 0.87 2 ? 0.6 0.0 0.26 8e+02 40 69 .. 173 202 .. 160 211 .. 0.85 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.4e-05 --SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 23 yeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiqsr 70 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA r FUN_000069-T1 85 FQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 78889999***********************************96655 PP == domain 2 score: 0.6 bits; conditional E-value: 0.26 HHHHHHHHHHHHHHTT---HHHHHHHHHHC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqs 69 +e+le A ++++kk++i ++lA+ FUN_000069-T1 173 AEILELAGNAARDNKKSRIIPRHLQLAVRN 202 689999999999999999999999999976 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 4.3e-05 0.13 35 77 .] 51 93 .. 49 93 .. 0.92 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.3e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000069-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66677889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (238 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 433 (0.0175049); expected 494.7 (0.02) Passed Vit filter: 36 (0.00145537); expected 24.7 (0.001) Passed Fwd filter: 8 (0.000323415); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.34 # Mc/sec: 2724.32 // Query: FUN_000070-T1 [L=238] Description: FUN_000070 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-63 213.3 0.5 6.7e-48 162.4 1.0 2.1 2 Histone Core histone H2A/H2B/H3/H4 1.7e-20 72.9 1.7 3.8e-20 71.8 1.7 1.7 1 Histone_H2A_C C-terminus of histone H2A 7.5e-10 39.4 0.0 0.00011 22.9 0.0 2.4 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y 0.00011 22.7 0.0 0.00027 21.4 0.0 1.7 1 CENP-T_C Centromere kinetochore component CENP-T his 0.00086 20.5 0.9 0.0013 19.9 0.9 1.3 1 PAF PCNA-associated factor histone like domain 0.0013 19.5 0.1 0.0039 18.0 0.0 1.7 2 CENP-S CENP-S protein ------ inclusion threshold ------ 0.024 15.2 0.1 0.23 12.0 0.0 2.2 2 TFIID-31kDa Transcription initiation factor IID, 31kD s 0.063 13.6 0.0 0.13 12.6 0.0 1.5 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 162.4 1.0 2.2e-51 6.7e-48 2 122 .] 7 132 .. 6 132 .. 0.97 2 ! 48.7 0.0 3.7e-16 1.1e-12 54 120 .. 136 201 .. 133 203 .. 0.95 Alignments for each domain: == domain 1 score: 162.4 bits; conditional E-value: 2.2e-51 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000070-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 102 68999***********99999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000070-T1 103 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 ****************************97 PP == domain 2 score: 48.7 bits; conditional E-value: 3.7e-16 SHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 54 qklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000070-T1 136 LQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 201 589**********8.88999**********************************************9 PP >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.8 1.7 1.2e-23 3.8e-20 1 34 [. 204 237 .. 204 238 .] 0.97 Alignments for each domain: == domain 1 score: 71.8 bits; conditional E-value: 1.2e-23 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000070-T1 204 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 237 9*******************************96 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 1.7e-05 0.052 2 64 .. 65 128 .. 64 128 .. 0.93 2 ! 22.9 0.0 3.4e-08 0.00011 2 65 .] 137 200 .. 136 200 .. 0.98 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 1.7e-05 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000070-T1 65 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 7888888887888889999******************************************998 PP == domain 2 score: 22.9 bits; conditional E-value: 3.4e-08 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000070-T1 137 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 200 69************************************************************98 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.0 8.8e-08 0.00027 14 76 .. 69 130 .. 59 149 .. 0.85 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 8.8e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000070-T1 69 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 130 466666666666889*****************************************86.4555 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.9 4.3e-07 0.0013 1 62 [. 1 58 [. 1 80 [. 0.90 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 4.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000070-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 58 99***998...9***************999999999988899999998.6999999999996 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.3e-06 0.0039 14 71 .. 71 130 .. 65 134 .. 0.83 2 ? -1.9 0.0 2 6.2e+03 53 76 .] 183 206 .. 160 206 .. 0.72 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.3e-06 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000070-T1 71 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 444433311666789999*************************************99876 PP == domain 2 score: -1.9 bits; conditional E-value: 2 CENP-S 53 AkHAkRstittdDvlLlaRrnesL 76 A+ k+s i + + L +R++e+L FUN_000070-T1 183 ARDNKKSRIIPRHLQLAVRNDEEL 206 455567777777888888887765 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 7.4e-05 0.23 23 70 .. 85 132 .. 69 148 .. 0.87 2 ? 0.6 0.0 0.26 8e+02 40 69 .. 173 202 .. 160 211 .. 0.85 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.4e-05 --SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 23 yeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiqsr 70 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA r FUN_000070-T1 85 FQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 78889999***********************************96655 PP == domain 2 score: 0.6 bits; conditional E-value: 0.26 HHHHHHHHHHHHHHTT---HHHHHHHHHHC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqs 69 +e+le A ++++kk++i ++lA+ FUN_000070-T1 173 AEILELAGNAARDNKKSRIIPRHLQLAVRN 202 689999999999999999999999999976 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 4.3e-05 0.13 35 77 .] 51 93 .. 49 93 .. 0.92 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.3e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000070-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66677889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (238 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 433 (0.0175049); expected 494.7 (0.02) Passed Vit filter: 36 (0.00145537); expected 24.7 (0.001) Passed Fwd filter: 8 (0.000323415); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.37 # Mc/sec: 2555.35 // Query: FUN_000071-T1 [L=139] Description: FUN_000071 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000071-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000071-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000071-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000071-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000071-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000071-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000071-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000071-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000071-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000071-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.34 # Mc/sec: 1592.70 // Query: FUN_000072-T1 [L=129] Description: FUN_000072 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000072-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000072-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000072-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.33 # Mc/sec: 1514.75 // Query: FUN_000073-T1 [L=139] Description: FUN_000073 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000073-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000073-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000073-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000073-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000073-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000073-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000073-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000073-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000073-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000073-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38 # Mc/sec: 1426.16 // Query: FUN_000074-T1 [L=272] Description: FUN_000074 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-43 146.0 4.7 8.7e-21 74.9 0.3 2.1 2 Histone Core histone H2A/H2B/H3/H4 1.4e-08 35.3 0.5 0.012 16.3 0.0 2.8 3 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a 1.8e-06 28.4 0.4 0.08 13.3 0.1 2.1 2 ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat 0.0001 22.8 1.7 0.35 11.3 0.2 2.2 2 YscO-like YscO-like protein 0.00019 22.3 0.0 1.5 9.9 0.0 2.4 2 TFIID_20kDa Transcription initiation factor TFIID subunit 0.00053 20.3 3.1 0.58 10.4 0.2 2.1 2 DUF5096 Domain of unknown function (DUF5096) ------ inclusion threshold ------ 0.018 15.7 0.0 10 6.8 0.0 2.4 2 Diphtheria_T Diphtheria toxin, T domain 0.079 13.5 3.4 24 5.5 0.0 3.4 3 LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain 0.079 13.0 0.0 22 5.2 0.0 2.3 2 Arm_3 Atypical Arm repeat 0.085 13.0 0.1 16 5.6 0.0 2.4 2 LUC7 LUC7 N_terminus 0.16 12.6 0.0 36 5.1 0.0 2.4 2 SAM_CEP-1_C CEP-1 C-terminal SAM domain 0.36 11.8 9.7 3.3 8.7 1.2 2.3 2 PHF20_AT-hook PHD finger protein 20, AT-hook Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 0.6 1.3e-23 2.8e-20 24 121 .. 7 100 .. 2 101 .. 0.95 2 ! 74.9 0.3 4.2e-24 8.7e-21 21 121 .. 151 247 .. 115 248 .. 0.92 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.3e-23 SSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHH CS Histone 24 skkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAv 119 +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq+A+ FUN_000074-T1 7 AAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 98 5678889999999999****************************....************************************************ PP HH CS Histone 120 rl 121 rl FUN_000074-T1 99 RL 100 *8 PP == domain 2 score: 74.9 bits; conditional E-value: 4.2e-24 .SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHH CS Histone 21 sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiq 116 + + +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq FUN_000074-T1 151 NVAAAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQ 242 56677888999999999******************************....********************************************* PP HHHHH CS Histone 117 lAvrl 121 +A+rl FUN_000074-T1 243 TAIRL 247 ****8 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 5.8e-06 0.012 8 65 .] 41 98 .. 40 98 .. 0.95 2 ? -2.6 0.0 4.5 9.3e+03 31 56 .. 109 134 .. 105 136 .. 0.63 3 ! 16.3 0.0 5.8e-06 0.012 8 65 .] 188 245 .. 187 245 .. 0.95 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 5.8e-06 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000074-T1 41 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 98 6799****88888.*****************************************9996 PP == domain 2 score: -2.6 bits; conditional E-value: 4.5 HHHHHHHHHHHHHHHHHHCCTTSSCE CS CBFD_NFYB_HMF 31 ecveefieevaseAaeickkekrKTi 56 +v+e + v++ ++++ + rK + FUN_000074-T1 109 HAVSEGTKAVTKYTSSKSPFDARKMV 134 45666666677777777777777765 PP == domain 3 score: 16.3 bits; conditional E-value: 5.8e-06 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000074-T1 188 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 245 6799****88888.*****************************************9996 PP >> ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.2 0.0 4.2e-05 0.086 42 117 .. 24 101 .. 5 104 .. 0.79 2 ! 13.3 0.1 3.9e-05 0.08 42 117 .. 171 248 .. 150 251 .. 0.78 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 4.2e-05 ARM_TT21 42 skekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000074-T1 24 ETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 101 233333445566778899999*******************98765266656788*********************998 PP == domain 2 score: 13.3 bits; conditional E-value: 3.9e-05 ARM_TT21 42 skekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000074-T1 171 ETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 248 233333445566778899999*******************98765266656788*********************998 PP >> YscO-like YscO-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.3 0.2 0.00017 0.35 39 113 .. 24 100 .. 2 120 .. 0.74 2 ! 10.8 0.1 0.00024 0.5 40 113 .. 172 247 .. 150 261 .. 0.76 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00017 HHHHHHHHHHHHHHHHHHHH.HHH.HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS YscO-like 39 akleaerdkvlkhkkaKlqq.lrd.eldkGttsdkikkmkeyikvvkeelkqeekkvedqkekVevAkkklEearee 113 + + r k+++ + + + l++ + d G +s+++ +m+++++ + e++++e ++ ++k ++ ++++ a FUN_000074-T1 24 ETAKRRRGKRKESYAIYIYKvLKQvHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRL 100 33344455555666666666454424599****************************************99988655 PP == domain 2 score: 10.8 bits; conditional E-value: 0.00024 HHHHHHHHHHHHHHHHHHH.HHH.HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS YscO-like 40 kleaerdkvlkhkkaKlqq.lrd.eldkGttsdkikkmkeyikvvkeelkqeekkvedqkekVevAkkklEearee 113 + r k+++ + + + l++ + d G +s+++ +m+++++ + e++++e ++ ++k ++ ++++ a FUN_000074-T1 172 TAKRRRGKRKESYAIYIYKvLKQvHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRL 247 3344455555555555555444414599****************************************99988655 PP >> TFIID_20kDa Transcription initiation factor TFIID subunit A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.9 0.0 0.00071 1.5 7 60 .. 43 96 .. 40 100 .. 0.93 2 ! 9.9 0.0 0.00071 1.5 7 60 .. 190 243 .. 187 247 .. 0.93 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00071 HHHHHHSSSEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCE-HHHHHH CS TFIID_20kDa 7 dLvqqidseekLdedvedlLleiaddFvesvtkkacklakhRksdklevrDiql 60 ++q+ +++ + + ++ ++d e + ++++l + k ++++r iq FUN_000074-T1 43 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 96 5789************************************************95 PP == domain 2 score: 9.9 bits; conditional E-value: 0.00071 HHHHHHSSSEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCE-HHHHHH CS TFIID_20kDa 7 dLvqqidseekLdedvedlLleiaddFvesvtkkacklakhRksdklevrDiql 60 ++q+ +++ + + ++ ++d e + ++++l + k ++++r iq FUN_000074-T1 190 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 243 5789************************************************95 PP >> DUF5096 Domain of unknown function (DUF5096) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.4 0.2 0.00028 0.58 27 73 .. 36 87 .. 32 100 .. 0.78 2 ! 10.4 0.2 0.00028 0.58 27 73 .. 183 234 .. 179 247 .. 0.78 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00028 DUF5096 27 iaalnllkllknif...ssskkikiiigg..ddiyneIglilgRLllakkyd 73 + a++++k+lk++ + s+k + i+++ +di+ +I++ +RL+l +k+ FUN_000074-T1 36 SYAIYIYKVLKQVHpdtGISSKAMGIMNSfvNDIFERIAVESSRLSLYNKKA 87 5799********99999666666666655459***************99543 PP == domain 2 score: 10.4 bits; conditional E-value: 0.00028 DUF5096 27 iaalnllkllknif...ssskkikiiigg..ddiyneIglilgRLllakkyd 73 + a++++k+lk++ + s+k + i+++ +di+ +I++ +RL+l +k+ FUN_000074-T1 183 SYAIYIYKVLKQVHpdtGISSKAMGIMNSfvNDIFERIAVESSRLSLYNKKA 234 5799********99999666666666655459***************99543 PP >> Diphtheria_T Diphtheria toxin, T domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 0.0 0.005 10 109 133 .. 57 81 .. 21 87 .. 0.86 2 ? 6.8 0.0 0.005 10 109 133 .. 204 228 .. 168 234 .. 0.86 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.005 HHHTECTTEESSSCHHHHHHHHHHH CS Diphtheria_T 109 salGiadgivkhdteeiavnsiaLs 133 +a+Gi ++ v++ e iav+s Ls FUN_000074-T1 57 KAMGIMNSFVNDIFERIAVESSRLS 81 69******************98887 PP == domain 2 score: 6.8 bits; conditional E-value: 0.005 HHHTECTTEESSSCHHHHHHHHHHH CS Diphtheria_T 109 salGiadgivkhdteeiavnsiaLs 133 +a+Gi ++ v++ e iav+s Ls FUN_000074-T1 204 KAMGIMNSFVNDIFERIAVESSRLS 228 69******************98887 PP >> LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 0.0 0.012 24 33 60 .. 72 99 .. 66 100 .. 0.88 2 ? 1.0 0.3 0.3 6.1e+02 37 65 .] 149 177 .. 148 177 .. 0.86 3 ? 5.5 0.0 0.012 24 33 60 .. 219 246 .. 213 247 .. 0.88 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.012 LonB_AAA-LID 33 dllrEAdywArkegaelveaehVekAle 60 + +E++ ++ +++++++++++++A++ FUN_000074-T1 72 RIAVESSRLSLYNKKATISSREIQTAIR 99 4678**********************96 PP == domain 2 score: 1.0 bits; conditional E-value: 0.3 LonB_AAA-LID 37 EAdywArkegaelveaehVekAleekeyR 65 E+++ A k+g+++v ++ +A +k++R FUN_000074-T1 149 ESNVAAAKKGEKRVGKAKSGTAETAKRRR 177 99************999877777777776 PP == domain 3 score: 5.5 bits; conditional E-value: 0.012 LonB_AAA-LID 33 dllrEAdywArkegaelveaehVekAle 60 + +E++ ++ +++++++++++++A++ FUN_000074-T1 219 RIAVESSRLSLYNKKATISSREIQTAIR 246 4678**********************96 PP >> Arm_3 Atypical Arm repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.0 0.01 22 20 41 .. 47 68 .. 47 77 .. 0.89 2 ? 5.2 0.0 0.01 22 20 41 .. 194 215 .. 194 224 .. 0.89 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.01 Arm_3 20 QeHeneeIYkkAlkIiekYFse 41 Q H + I+ kA+ I+ ++ ++ FUN_000074-T1 47 QVHPDTGISSKAMGIMNSFVND 68 889999*************987 PP == domain 2 score: 5.2 bits; conditional E-value: 0.01 Arm_3 20 QeHeneeIYkkAlkIiekYFse 41 Q H + I+ kA+ I+ ++ ++ FUN_000074-T1 194 QVHPDTGISSKAMGIMNSFVND 215 889999*************987 PP >> LUC7 LUC7 N_terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.0 0.0078 16 76 120 .. 49 93 .. 11 120 .. 0.84 2 ? 5.1 0.0 0.011 23 76 120 .. 196 240 .. 181 249 .. 0.79 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0078 T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH CS LUC7 76 kkkygyeeellrflekliedvdrkiekakerlektqeekekeeek 120 + ++g +++ ++++++d+ ++i+ + +rl++ +++ + ++++ FUN_000074-T1 49 HPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSRE 93 4457888999***********************988777655544 PP == domain 2 score: 5.1 bits; conditional E-value: 0.011 T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH CS LUC7 76 kkkygyeeellrflekliedvdrkiekakerlektqeekekeeek 120 + ++g +++ ++++++d+ ++i+ + +rl++ +++ + ++++ FUN_000074-T1 196 HPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSRE 240 4457888999***********************988776655444 PP >> SAM_CEP-1_C CEP-1 C-terminal SAM domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.0 0.017 36 67 93 .. 61 85 .. 46 88 .. 0.88 2 ? 5.1 0.0 0.017 36 67 93 .. 208 232 .. 193 235 .. 0.88 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.017 SAM_CEP-1_C 67 LlkaFekdsdiFeklgidsekieklyk 93 +++ F + diFe++ ++s+ ++ ++k FUN_000074-T1 61 IMNSFVN--DIFERIAVESSRLSLYNK 85 6777777..************999886 PP == domain 2 score: 5.1 bits; conditional E-value: 0.017 SAM_CEP-1_C 67 LlkaFekdsdiFeklgidsekieklyk 93 +++ F + diFe++ ++s+ ++ ++k FUN_000074-T1 208 IMNSFVN--DIFERIAVESSRLSLYNK 232 6777777..************999886 PP >> PHF20_AT-hook PHD finger protein 20, AT-hook # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 1.8 0.0044 9.1 62 88 .. 7 33 .. 3 39 .. 0.90 2 ? 8.7 1.2 0.0016 3.3 60 88 .. 152 180 .. 146 186 .. 0.88 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0044 PHF20_AT-hook 62 vdkksesdivKksQenlkeaKRkRgrp 88 + kk e+ ++K + ++ aKR+Rg+ FUN_000074-T1 7 AAKKGEKRVGKAKSGTAETAKRRRGKR 33 679**********************85 PP == domain 2 score: 8.7 bits; conditional E-value: 0.0016 PHF20_AT-hook 60 tqvdkksesdivKksQenlkeaKRkRgrp 88 + kk e+ ++K + ++ aKR+Rg+ FUN_000074-T1 152 VAAAKKGEKRVGKAKSGTAETAKRRRGKR 180 5678***********************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (272 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 418 (0.0168984); expected 494.7 (0.02) Passed bias filter: 244 (0.00986417); expected 494.7 (0.02) Passed Vit filter: 29 (0.00117238); expected 24.7 (0.001) Passed Fwd filter: 13 (0.00052555); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 12 [number of targets reported over threshold] # CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.32 # Mc/sec: 3292.62 // Query: FUN_000075-T1 [L=179] Description: FUN_000075 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-53 179.3 0.2 2.6e-35 121.7 0.3 2.0 2 Histone Core histone H2A/H2B/H3/H4 3.1e-10 40.6 0.0 6e-05 23.7 0.0 2.1 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y 9e-05 23.0 0.1 0.00021 21.8 0.0 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00064 20.5 0.1 0.0024 18.7 0.0 1.9 2 CENP-S CENP-S protein ------ inclusion threshold ------ 0.016 15.8 0.1 0.2 12.2 0.0 2.0 2 TFIID-31kDa Transcription initiation factor IID, 31kD s 0.021 15.2 0.0 0.039 14.3 0.0 1.5 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.6 0.0 2e-18 8.2e-15 42 120 .. 11 88 .. 4 90 .. 0.94 2 ! 121.7 0.3 6.4e-39 2.6e-35 47 122 .] 100 175 .. 96 175 .. 0.99 Alignments for each domain: == domain 1 score: 55.6 bits; conditional E-value: 2e-18 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000075-T1 11 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 88 578999999****************8.88999**********************************************9 PP == domain 2 score: 121.7 bits; conditional E-value: 6.4e-39 HSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 47 kstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvrlr 122 kst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000075-T1 100 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 175 79************************************************************************97 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.7 0.0 1.5e-08 6e-05 2 65 .] 24 87 .. 23 87 .. 0.98 2 ! 15.1 0.0 7.2e-06 0.03 2 64 .. 108 171 .. 107 171 .. 0.93 Alignments for each domain: == domain 1 score: 23.7 bits; conditional E-value: 1.5e-08 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000075-T1 24 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 87 69************************************************************98 PP == domain 2 score: 15.1 bits; conditional E-value: 7.2e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000075-T1 108 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 171 7888888887888889999******************************************998 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 2.4 1e+04 19 36 .. 68 84 .. 56 92 .. 0.58 2 ! 21.8 0.0 5.2e-08 0.00021 14 76 .. 112 173 .. 103 177 .. 0.85 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 2.4 CENP-T_C 19 rfakasgskaklskeale 36 ++a+ +k ++ + +l+ FUN_000075-T1 68 NAARD-NKKSRIIPRHLQ 84 44333.455566665555 PP == domain 2 score: 21.8 bits; conditional E-value: 5.2e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000075-T1 112 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 173 466666666666889*****************************************86.4454 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.0 0.59 2.4e+03 53 75 .. 70 92 .. 20 93 .. 0.65 2 ! 18.7 0.0 5.8e-07 0.0024 14 71 .. 114 173 .. 108 176 .. 0.83 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.59 CENP-S 53 AkHAkRstittdDvlLlaRrnes 75 A+ k+s i + + L +R++e+ FUN_000075-T1 70 ARDNKKSRIIPRHLQLAVRNDEE 92 45556666777777777777766 PP == domain 2 score: 18.7 bits; conditional E-value: 5.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000075-T1 114 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 173 444433312666789999*************************************99876 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.5 0.0 0.096 4e+02 40 70 .. 60 90 .. 40 106 .. 0.86 2 ? 12.2 0.0 4.9e-05 0.2 22 68 .. 127 173 .. 112 178 .. 0.87 Alignments for each domain: == domain 1 score: 1.5 bits; conditional E-value: 0.096 HHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqsr 70 +e+le A ++++kk++i ++lA+ FUN_000075-T1 60 AEILELAGNAARDNKKSRIIPRHLQLAVRND 90 6899999999999999999999999999764 PP == domain 2 score: 12.2 bits; conditional E-value: 4.9e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000075-T1 127 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 173 578889999***********************************955 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.0 9.5e-06 0.039 24 77 .] 80 136 .. 64 136 .. 0.79 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 9.5e-06 YebU_pre-PUA_dom 24 deeleLWqR.Dkei..WLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 +++l+L R D+e+ L +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000075-T1 80 PRHLQLAVRnDEELnkLLAGKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 136 5566666552455532466789999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (179 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 503 (0.0203347); expected 494.7 (0.02) Passed bias filter: 402 (0.0162516); expected 494.7 (0.02) Passed Vit filter: 43 (0.00173836); expected 24.7 (0.001) Passed Fwd filter: 6 (0.000242561); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35 # Mc/sec: 1992.90 // Query: FUN_000076-T1 [L=224] Description: FUN_000076 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-26 91.3 4.3 1.9e-20 73.8 0.9 2.2 2 Histone Core histone H2A/H2B/H3/H4 5.1e-09 36.7 0.6 0.0041 17.8 0.1 2.6 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) 1.3e-06 28.9 0.0 4.8e-05 23.8 0.0 2.3 2 CENP-T_C Centromere kinetochore component CENP-T hist 7.9e-05 23.2 0.2 0.00046 20.7 0.0 2.2 2 TAF TATA box binding protein associated factor ( 0.00026 21.5 0.1 0.012 16.2 0.0 2.2 2 TFIID-31kDa Transcription initiation factor IID, 31kD su 0.0026 18.5 0.0 0.012 16.5 0.0 2.0 2 CENP-S CENP-S protein 0.0035 18.2 0.1 1 10.3 0.0 2.4 2 TFIID_20kDa Transcription initiation factor TFIID subuni 0.0078 16.7 0.1 4.1 8.0 0.0 2.7 2 LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain ------ inclusion threshold ------ 0.013 15.9 0.1 0.02 15.3 0.1 1.3 1 ARM_TT21 Tetratricopeptide repeat protein 21 ARM repe 0.013 15.9 0.2 0.02 15.3 0.2 1.2 1 Intron_maturas2 Type II intron maturase 0.19 12.2 0.1 0.44 11.0 0.1 1.6 1 Bromo_TP Bromodomain associated Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.1 7.4e-07 0.0017 87 119 .. 59 91 .. 35 94 .. 0.92 2 ! 73.8 0.9 8.3e-24 1.9e-20 24 121 .. 106 199 .. 92 200 .. 0.93 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 7.4e-07 HHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHH CS Histone 87 veallvelfeeAnllakhaKRvTltpkDiqlAv 119 ++ +l+ + ++A +++haKR+T+t+ D+ A+ FUN_000076-T1 59 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 6789************************99886 PP == domain 2 score: 73.8 bits; conditional E-value: 8.3e-24 SSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHH CS Histone 24 skkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAv 119 +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq+A+ FUN_000076-T1 106 AAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 197 56777899999999999***************************....************************************************ PP HH CS Histone 120 rl 121 rl FUN_000076-T1 198 RL 199 *8 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.1 1.8e-06 0.0041 32 65 .] 58 91 .. 32 91 .. 0.84 2 ! 16.8 0.0 3.8e-06 0.0084 8 65 .] 140 197 .. 139 197 .. 0.95 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 1.8e-06 HHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 32 cveefieevaseAaeickkekrKTikaehiklAv 65 ++ f+e v + A+ +++++krKT++a ++ A+ FUN_000076-T1 58 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 5778*************************98876 PP == domain 2 score: 16.8 bits; conditional E-value: 3.8e-06 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000076-T1 140 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 197 6799****88888.*****************************************9996 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 0.0 2.1e-08 4.8e-05 23 85 .. 40 102 .. 23 111 .. 0.75 2 ? 2.9 0.0 0.071 1.6e+02 28 72 .. 151 195 .. 137 215 .. 0.81 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 2.1e-08 CENP-T_C 23 asgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkrqrkvtsktt 85 ++g +++s e +++ f+e v +D +y++Ha+RKt+ Dv+ + + t++ + FUN_000076-T1 40 RRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALNSSSFRTASCK 102 3455567777777777888999**************************998877665555555 PP == domain 2 score: 2.9 bits; conditional E-value: 0.071 CENP-T_C 28 aklskealealeqasdeffeqvgeDLeayakHagRKtidesDvil 72 + +s +a+ + + ++ fe+++ + +++ ++ ti ++++ + FUN_000076-T1 151 TGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 195 668899999999999999999999888888888888887777665 PP >> TAF TATA box binding protein associated factor (TAF) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 0.0 2.1e-07 0.00046 35 65 .. 61 91 .. 27 92 .. 0.78 2 ? -0.2 0.0 0.7 1.6e+03 38 66 .] 170 198 .. 151 198 .. 0.80 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 2.1e-07 HHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS TAF 35 yrlkeivqeaakfmrhskRrkLtvaDvdsAL 65 l +++++a+ +++h+kR++ t+ Dv +AL FUN_000076-T1 61 VFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 55889**********************9998 PP == domain 2 score: -0.2 bits; conditional E-value: 0.7 HHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 38 keivqeaakfmrhskRrkLtvaDvdsALr 66 +i+ e+++ k +++++ ++ A+r FUN_000076-T1 170 ERIAVESSRLSLYNKKATISSREIQTAIR 198 56778888888888999999999999998 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 5.2e-06 0.012 38 70 .. 62 94 .. 34 102 .. 0.86 2 ? 3.4 0.0 0.048 1.1e+02 40 70 .. 170 200 .. 141 213 .. 0.79 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 5.2e-06 HHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 38 YttevledAkvysehakkkkidlddvrlAiqsr 70 + +v++dA +y ehak+k++++ dv A++s FUN_000076-T1 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYALNSS 94 6789*************************9875 PP == domain 2 score: 3.4 bits; conditional E-value: 0.048 HHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqsr 70 + +++ +s ++kk++i+ ++++Ai FUN_000076-T1 170 ERIAVESSRLSLYNKKATISSREIQTAIRLL 200 55667899999999**************865 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.0 5.2e-06 0.012 42 67 .. 63 88 .. 36 94 .. 0.88 2 ? -1.2 0.0 1.7 3.7e+03 30 49 .. 160 179 .. 137 195 .. 0.50 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 5.2e-06 CENP-S 42 lenlakDLeaFAkHAkRstittdDvl 67 len+ +D ++ +HAkR+t+t+ Dv+ FUN_000076-T1 63 LENVIRDAVTYTEHAKRKTVTAMDVV 88 789999*******************7 PP == domain 2 score: -1.2 bits; conditional E-value: 1.7 CENP-S 30 fiaaltelvykqlenlakDL 49 ++++ ++ ++++++ ++ L FUN_000076-T1 160 IMNSFVNDIFERIAVESSRL 179 22333333444444444444 PP >> TFIID_20kDa Transcription initiation factor TFIID subunit A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 0.0 0.017 38 33 62 .. 62 91 .. 57 94 .. 0.90 2 ! 10.3 0.0 0.00046 1 7 60 .. 142 195 .. 139 199 .. 0.93 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.017 HHHHHHHHHHHHHHHTT-SCE-HHHHHHHH CS TFIID_20kDa 33 FvesvtkkacklakhRksdklevrDiqlhl 62 F e+v+ a+ h k +++ + D+ + l FUN_000076-T1 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 99***********************98777 PP == domain 2 score: 10.3 bits; conditional E-value: 0.00046 HHHHHHSSSEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCE-HHHHHH CS TFIID_20kDa 7 dLvqqidseekLdedvedlLleiaddFvesvtkkacklakhRksdklevrDiql 60 ++q+ +++ + + ++ ++d e + ++++l + k ++++r iq FUN_000076-T1 142 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 195 5789************************************************95 PP >> LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 0.0 0.0018 4.1 31 65 .] 63 97 .. 62 97 .. 0.92 2 ! 5.9 0.0 0.0081 18 33 60 .. 171 198 .. 165 199 .. 0.88 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.0018 LonB_AAA-LID 31 iadllrEAdywArkegaelveaehVekAleekeyR 65 +++++r A ++ +++++++v+a +V Al+ +R FUN_000076-T1 63 LENVIRDAVTYTEHAKRKTVTAMDVVYALNSSSFR 97 57899************************988777 PP == domain 2 score: 5.9 bits; conditional E-value: 0.0081 LonB_AAA-LID 33 dllrEAdywArkegaelveaehVekAle 60 + +E++ ++ +++++++++++++A++ FUN_000076-T1 171 RIAVESSRLSLYNKKATISSREIQTAIR 198 4678**********************96 PP >> ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.3 0.1 8.8e-06 0.02 26 117 .. 106 200 .. 83 203 .. 0.70 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 8.8e-06 ARM_TT21 26 AlklLktAlklpg.kkkskekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 A+k ++ + ++ + +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000076-T1 106 AAKKGEKRVGKAKsGTAETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 200 44333333332220222333344445567778899999*******************98765266656788*********************998 PP >> Intron_maturas2 Type II intron maturase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.3 0.2 8.7e-06 0.02 32 109 .. 44 121 .. 27 152 .. 0.83 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 8.7e-06 Intron_maturas2 32 PrsvlrwidledrdIllry.kaiirgllnYYsfasnkkrlrerikyilrkscvkTLArKlklktvrkvikkfGkklsdl 109 +++ +i++e+r +l+ + + +ir + Y a++k+ + + y l+ s +T K + +k k+ Gk s FUN_000076-T1 44 VKRISGLIYEETRGVLKVFlENVIRDAVTYTEHAKRKTVTAMDVVYALNSSSFRTASCKCRA-AAKKGEKRVGKAKSGT 121 5678899**********99457*******************9*******************9.9999999999544433 PP >> Bromo_TP Bromodomain associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.1 0.00019 0.44 34 70 .. 57 93 .. 52 100 .. 0.87 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00019 HHHHHHHHHHHHHHHHHHHHCCCCS--STTCCCCCHH CS Bromo_TP 34 eiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70 ++++ +++++ ++a + eha R ++t Dvv +L+ FUN_000076-T1 57 GVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALNS 93 56778999999*********************99975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (224 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 827 (0.0334331); expected 494.7 (0.02) Passed bias filter: 499 (0.020173); expected 494.7 (0.02) Passed Vit filter: 43 (0.00173836); expected 24.7 (0.001) Passed Fwd filter: 11 (0.000444696); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.35 # Mc/sec: 2532.28 // Query: FUN_000077-T1 [L=164] Description: FUN_000077 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000077-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000077-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000077-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000077-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.34 # Mc/sec: 1885.06 // Query: FUN_000078-T1 [L=129] Description: FUN_000078 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000078-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000078-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000078-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.33 # Mc/sec: 1547.68 // Query: FUN_000079-T1 [L=139] Description: FUN_000079 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000079-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000079-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000079-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000079-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000079-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000079-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000079-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000079-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000079-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000079-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.33 # Mc/sec: 1643.72 // Query: FUN_000080-T1 [L=129] Description: FUN_000080 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000080-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000080-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000080-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.33 # Mc/sec: 1547.66 // Query: FUN_000081-T1 [L=238] Description: FUN_000081 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-63 213.3 0.5 6.7e-48 162.4 1.0 2.1 2 Histone Core histone H2A/H2B/H3/H4 1.7e-20 72.9 1.7 3.8e-20 71.8 1.7 1.7 1 Histone_H2A_C C-terminus of histone H2A 7.5e-10 39.4 0.0 0.00011 22.9 0.0 2.4 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y 0.00011 22.7 0.0 0.00027 21.4 0.0 1.7 1 CENP-T_C Centromere kinetochore component CENP-T his 0.00086 20.5 0.9 0.0013 19.9 0.9 1.3 1 PAF PCNA-associated factor histone like domain 0.0013 19.5 0.1 0.0039 18.0 0.0 1.7 2 CENP-S CENP-S protein ------ inclusion threshold ------ 0.024 15.2 0.1 0.23 12.0 0.0 2.2 2 TFIID-31kDa Transcription initiation factor IID, 31kD s 0.063 13.6 0.0 0.13 12.6 0.0 1.5 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 162.4 1.0 2.2e-51 6.7e-48 2 122 .] 7 132 .. 6 132 .. 0.97 2 ! 48.7 0.0 3.7e-16 1.1e-12 54 120 .. 136 201 .. 133 203 .. 0.95 Alignments for each domain: == domain 1 score: 162.4 bits; conditional E-value: 2.2e-51 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000081-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 102 68999***********99999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000081-T1 103 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 ****************************97 PP == domain 2 score: 48.7 bits; conditional E-value: 3.7e-16 SHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 54 qklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000081-T1 136 LQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 201 589**********8.88999**********************************************9 PP >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.8 1.7 1.2e-23 3.8e-20 1 34 [. 204 237 .. 204 238 .] 0.97 Alignments for each domain: == domain 1 score: 71.8 bits; conditional E-value: 1.2e-23 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000081-T1 204 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 237 9*******************************96 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 1.7e-05 0.052 2 64 .. 65 128 .. 64 128 .. 0.93 2 ! 22.9 0.0 3.4e-08 0.00011 2 65 .] 137 200 .. 136 200 .. 0.98 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 1.7e-05 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000081-T1 65 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 7888888887888889999******************************************998 PP == domain 2 score: 22.9 bits; conditional E-value: 3.4e-08 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000081-T1 137 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 200 69************************************************************98 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.0 8.8e-08 0.00027 14 76 .. 69 130 .. 59 149 .. 0.85 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 8.8e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000081-T1 69 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 130 466666666666889*****************************************86.4555 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.9 4.3e-07 0.0013 1 62 [. 1 58 [. 1 80 [. 0.90 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 4.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000081-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 58 99***998...9***************999999999988899999998.6999999999996 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.3e-06 0.0039 14 71 .. 71 130 .. 65 134 .. 0.83 2 ? -1.9 0.0 2 6.2e+03 53 76 .] 183 206 .. 160 206 .. 0.72 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.3e-06 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000081-T1 71 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 444433311666789999*************************************99876 PP == domain 2 score: -1.9 bits; conditional E-value: 2 CENP-S 53 AkHAkRstittdDvlLlaRrnesL 76 A+ k+s i + + L +R++e+L FUN_000081-T1 183 ARDNKKSRIIPRHLQLAVRNDEEL 206 455567777777888888887765 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 7.4e-05 0.23 23 70 .. 85 132 .. 69 148 .. 0.87 2 ? 0.6 0.0 0.26 8e+02 40 69 .. 173 202 .. 160 211 .. 0.85 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.4e-05 --SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 23 yeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiqsr 70 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA r FUN_000081-T1 85 FQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 78889999***********************************96655 PP == domain 2 score: 0.6 bits; conditional E-value: 0.26 HHHHHHHHHHHHHHTT---HHHHHHHHHHC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqs 69 +e+le A ++++kk++i ++lA+ FUN_000081-T1 173 AEILELAGNAARDNKKSRIIPRHLQLAVRN 202 689999999999999999999999999976 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 4.3e-05 0.13 35 77 .] 51 93 .. 49 93 .. 0.92 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.3e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000081-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66677889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (238 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 433 (0.0175049); expected 494.7 (0.02) Passed Vit filter: 36 (0.00145537); expected 24.7 (0.001) Passed Fwd filter: 8 (0.000323415); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.32 # Mc/sec: 2878.47 // Query: FUN_000082-T1 [L=136] Description: FUN_000082 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-49 165.1 1.0 1.1e-48 164.9 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.5e-05 23.4 0.4 0.0001 22.7 0.1 1.5 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00027 22.1 0.7 0.00031 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00083 20.1 0.0 0.0013 19.5 0.0 1.2 1 CENP-S CENP-S protein 0.0081 16.9 0.0 0.016 15.9 0.0 1.5 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.027 14.8 0.0 0.047 14.0 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.057 14.0 0.2 0.11 13.0 0.0 1.5 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.9 1.0 3.2e-52 1.1e-48 2 122 .] 7 132 .. 6 132 .. 0.97 Alignments for each domain: == domain 1 score: 164.9 bits; conditional E-value: 3.2e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000082-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 102 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000082-T1 103 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.0 3.7 1.3e+04 15 24 .. 20 29 .. 15 37 .. 0.61 2 ! 22.7 0.1 3e-08 0.0001 14 76 .. 69 130 .. 56 134 .. 0.85 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 3.7 CENP-T_C 15 rlakrfakas 24 +la+++a++s FUN_000082-T1 20 QLATKAARKS 29 4555555444 PP == domain 2 score: 22.7 bits; conditional E-value: 3e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000082-T1 69 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 130 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 8.7e-08 0.00031 1 62 [. 1 58 [. 1 88 [. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 8.7e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000082-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 58 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.6e-07 0.0013 14 71 .. 71 130 .. 65 133 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.6e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000082-T1 71 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.5e-06 0.016 2 64 .. 65 128 .. 64 128 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.5e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000082-T1 65 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 789999888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 1.3e-05 0.047 35 77 .] 51 93 .. 48 93 .. 0.93 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 1.3e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000082-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.0 2.3 8.3e+03 74 90 .. 11 27 .. 5 33 .. 0.62 2 ? 13.0 0.0 3.2e-05 0.11 22 68 .. 84 130 .. 69 135 .. 0.87 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 2.3 SSS-CSTHHHHHHHHHH CS TFIID-31kDa 74 sfteppprelLlelAre 90 s ++ pr+ L++ A++ FUN_000082-T1 11 STGGKAPRKQLATKAAR 27 55566677777666654 PP == domain 2 score: 13.0 bits; conditional E-value: 3.2e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000082-T1 84 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (136 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 490 (0.0198092); expected 494.7 (0.02) Passed bias filter: 373 (0.0150792); expected 494.7 (0.02) Passed Vit filter: 31 (0.00125323); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36 # Mc/sec: 1486.54 // Query: FUN_000083-T1 [L=129] Description: FUN_000083 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000083-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000083-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000083-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.32 # Mc/sec: 1559.56 // Query: FUN_000084-T1 [L=164] Description: FUN_000084 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000084-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000084-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000084-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000084-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.32 # Mc/sec: 2001.41 // Query: FUN_000085-T1 [L=129] Description: FUN_000085 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000085-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000085-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000085-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.34 # Mc/sec: 1488.74 // Query: FUN_000086-T1 [L=164] Description: FUN_000086 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000086-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000086-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000086-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000086-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.33 # Mc/sec: 1932.02 // Query: FUN_000087-T1 [L=129] Description: FUN_000087 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000087-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000087-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000087-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36 # Mc/sec: 1419.05 // Query: FUN_000088-T1 [L=164] Description: FUN_000088 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000088-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000088-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000088-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000088-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.37 # Mc/sec: 1745.47 // Query: FUN_000089-T1 [L=129] Description: FUN_000089 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000089-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000089-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000089-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.34 # Mc/sec: 1486.33 // Query: FUN_000090-T1 [L=164] Description: FUN_000090 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000090-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000090-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000090-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000090-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.34 # Mc/sec: 1915.37 // Query: FUN_000091-T1 [L=129] Description: FUN_000091 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000091-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000091-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000091-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 1512.18 // Query: FUN_000092-T1 [L=164] Description: FUN_000092 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000092-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000092-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000092-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000092-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.37 # Mc/sec: 1731.92 // Query: FUN_000093-T1 [L=129] Description: FUN_000093 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000093-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000093-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000093-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38 # Mc/sec: 1339.01 // Query: FUN_000094-T1 [L=164] Description: FUN_000094 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000094-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000094-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000094-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000094-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.33 # Mc/sec: 1939.35 // Query: FUN_000095-T1 [L=129] Description: FUN_000095 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000095-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000095-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000095-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.31 # Mc/sec: 1638.60 // Query: FUN_000096-T1 [L=164] Description: FUN_000096 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000096-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000096-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000096-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000096-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.32 # Mc/sec: 2032.63 // Query: FUN_000097-T1 [L=129] Description: FUN_000097 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000097-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000097-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000097-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.32 # Mc/sec: 1558.41 // Query: FUN_000098-T1 [L=164] Description: FUN_000098 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000098-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000098-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000098-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000098-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37 # Mc/sec: 1746.51 // Query: FUN_000099-T1 [L=129] Description: FUN_000099 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000099-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000099-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000099-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 1522.81 // Query: FUN_000100-T1 [L=164] Description: FUN_000100 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000100-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000100-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000100-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000100-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.34 # Mc/sec: 1883.10 // Query: FUN_000101-T1 [L=129] Description: FUN_000101 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000101-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000101-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000101-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.34 # Mc/sec: 1484.17 // Query: FUN_000102-T1 [L=164] Description: FUN_000102 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000102-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000102-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000102-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000102-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 1918.19 // Query: FUN_000103-T1 [L=129] Description: FUN_000103 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.1 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000103-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000103-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000103-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 516 (0.0208603); expected 494.7 (0.02) Passed bias filter: 436 (0.0176261); expected 494.7 (0.02) Passed Vit filter: 33 (0.00133409); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38 # Mc/sec: 1316.72 // Query: FUN_000104-T1 [L=139] Description: FUN_000104 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000104-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000104-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000104-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000104-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000104-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000104-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000104-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000104-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000104-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000104-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.31 # Mc/sec: 1727.79 // Query: FUN_000105-T1 [L=129] Description: FUN_000105 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000105-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000105-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000105-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37 # Mc/sec: 1377.05 // Query: FUN_000106-T1 [L=139] Description: FUN_000106 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000106-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000106-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000106-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000106-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000106-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000106-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000106-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000106-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000106-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000106-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.33 # Mc/sec: 1647.93 // Query: FUN_000107-T1 [L=267] Description: FUN_000107 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-43 146.7 4.0 9.2e-21 74.8 0.2 2.1 2 Histone Core histone H2A/H2B/H3/H4 1.3e-08 35.4 0.2 0.011 16.4 0.0 2.6 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a 1.7e-06 28.5 0.4 0.077 13.4 0.1 2.1 2 ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat 5.9e-05 23.6 0.9 0.33 11.4 0.1 2.2 2 YscO-like YscO-like protein 0.00019 22.3 0.0 1.4 9.9 0.0 2.4 2 TFIID_20kDa Transcription initiation factor TFIID subunit 0.00051 20.4 3.1 0.57 10.4 0.2 2.1 2 DUF5096 Domain of unknown function (DUF5096) ------ inclusion threshold ------ 0.017 15.8 0.0 10 6.8 0.0 2.4 2 Diphtheria_T Diphtheria toxin, T domain 0.073 13.6 3.4 23 5.5 0.0 3.4 3 LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain 0.077 13.1 0.0 21 5.2 0.0 2.3 2 Arm_3 Atypical Arm repeat 0.082 13.1 0.1 16 5.6 0.0 2.4 2 LUC7 LUC7 N_terminus 0.16 12.7 0.0 35 5.2 0.0 2.4 2 SAM_CEP-1_C CEP-1 C-terminal SAM domain 0.21 12.1 0.1 43 4.7 0.0 2.5 2 Tt1218-like Type IV pilin Tt1218 0.35 11.8 9.7 3.2 8.7 1.2 2.3 2 PHF20_AT-hook PHD finger protein 20, AT-hook Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.3 0.6 1.4e-23 2.7e-20 24 121 .. 7 100 .. 2 101 .. 0.95 2 ! 74.8 0.2 4.8e-24 9.2e-21 21 121 .. 146 242 .. 124 243 .. 0.93 Alignments for each domain: == domain 1 score: 73.3 bits; conditional E-value: 1.4e-23 SSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHH CS Histone 24 skkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAv 119 +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq+A+ FUN_000107-T1 7 AAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 98 5678889999999999****************************....************************************************ PP HH CS Histone 120 rl 121 rl FUN_000107-T1 99 RL 100 *8 PP == domain 2 score: 74.8 bits; conditional E-value: 4.8e-24 .SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHH CS Histone 21 sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiq 116 + + +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq FUN_000107-T1 146 NVAAAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQ 237 556678889999999999*****************************....********************************************* PP HHHHH CS Histone 117 lAvrl 121 +A+rl FUN_000107-T1 238 TAIRL 242 ****8 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 6e-06 0.011 8 65 .] 41 98 .. 40 98 .. 0.95 2 ! 16.4 0.0 6e-06 0.011 8 65 .] 183 240 .. 182 240 .. 0.95 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 6e-06 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000107-T1 41 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 98 6799****88888.*****************************************9996 PP == domain 2 score: 16.4 bits; conditional E-value: 6e-06 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000107-T1 183 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 240 6799****88888.*****************************************9996 PP >> ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.3 0.0 4.3e-05 0.082 42 117 .. 24 101 .. 5 104 .. 0.79 2 ! 13.4 0.1 4.1e-05 0.077 42 117 .. 166 243 .. 145 246 .. 0.78 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 4.3e-05 ARM_TT21 42 skekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000107-T1 24 ETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 101 233333445566778899999*******************98765266656788*********************998 PP == domain 2 score: 13.4 bits; conditional E-value: 4.1e-05 ARM_TT21 42 skekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000107-T1 166 ETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 243 233333445566778899999*******************98765266656788*********************998 PP >> YscO-like YscO-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.4 0.1 0.00017 0.33 39 113 .. 24 100 .. 2 115 .. 0.74 2 ! 10.9 0.1 0.00025 0.48 40 113 .. 167 242 .. 145 256 .. 0.76 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00017 HHHHHHHHHHHHHHHHHHHH.HHH.HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS YscO-like 39 akleaerdkvlkhkkaKlqq.lrd.eldkGttsdkikkmkeyikvvkeelkqeekkvedqkekVevAkkklEearee 113 + + r k+++ + + + l++ + d G +s+++ +m+++++ + e++++e ++ ++k ++ ++++ a FUN_000107-T1 24 ETAKRRRGKRKESYAIYIYKvLKQvHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRL 100 33344455555666666666454424599****************************************99988655 PP == domain 2 score: 10.9 bits; conditional E-value: 0.00025 HHHHHHHHHHHHHHHHHHH.HHH.HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS YscO-like 40 kleaerdkvlkhkkaKlqq.lrd.eldkGttsdkikkmkeyikvvkeelkqeekkvedqkekVevAkkklEearee 113 + r k+++ + + + l++ + d G +s+++ +m+++++ + e++++e ++ ++k ++ ++++ a FUN_000107-T1 167 TAKRRRGKRKESYAIYIYKvLKQvHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRL 242 3344455555555555555444414599****************************************99988655 PP >> TFIID_20kDa Transcription initiation factor TFIID subunit A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.9 0.0 0.00074 1.4 7 60 .. 43 96 .. 40 100 .. 0.93 2 ! 9.9 0.0 0.00074 1.4 7 60 .. 185 238 .. 182 242 .. 0.93 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00074 HHHHHHSSSEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCE-HHHHHH CS TFIID_20kDa 7 dLvqqidseekLdedvedlLleiaddFvesvtkkacklakhRksdklevrDiql 60 ++q+ +++ + + ++ ++d e + ++++l + k ++++r iq FUN_000107-T1 43 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 96 5789************************************************95 PP == domain 2 score: 9.9 bits; conditional E-value: 0.00074 HHHHHHSSSEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCE-HHHHHH CS TFIID_20kDa 7 dLvqqidseekLdedvedlLleiaddFvesvtkkacklakhRksdklevrDiql 60 ++q+ +++ + + ++ ++d e + ++++l + k ++++r iq FUN_000107-T1 185 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 238 5789************************************************95 PP >> DUF5096 Domain of unknown function (DUF5096) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.4 0.2 0.0003 0.57 27 73 .. 36 87 .. 32 100 .. 0.78 2 ! 10.4 0.2 0.0003 0.57 27 73 .. 178 229 .. 174 242 .. 0.78 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.0003 DUF5096 27 iaalnllkllknif...ssskkikiiigg..ddiyneIglilgRLllakkyd 73 + a++++k+lk++ + s+k + i+++ +di+ +I++ +RL+l +k+ FUN_000107-T1 36 SYAIYIYKVLKQVHpdtGISSKAMGIMNSfvNDIFERIAVESSRLSLYNKKA 87 5799********99999666666666655459***************99543 PP == domain 2 score: 10.4 bits; conditional E-value: 0.0003 DUF5096 27 iaalnllkllknif...ssskkikiiigg..ddiyneIglilgRLllakkyd 73 + a++++k+lk++ + s+k + i+++ +di+ +I++ +RL+l +k+ FUN_000107-T1 178 SYAIYIYKVLKQVHpdtGISSKAMGIMNSfvNDIFERIAVESSRLSLYNKKA 229 5799********99999666666666655459***************99543 PP >> Diphtheria_T Diphtheria toxin, T domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 0.0 0.0053 10 109 133 .. 57 81 .. 20 87 .. 0.86 2 ? 6.8 0.0 0.0053 10 109 133 .. 199 223 .. 163 229 .. 0.86 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0053 HHHTECTTEESSSCHHHHHHHHHHH CS Diphtheria_T 109 salGiadgivkhdteeiavnsiaLs 133 +a+Gi ++ v++ e iav+s Ls FUN_000107-T1 57 KAMGIMNSFVNDIFERIAVESSRLS 81 69******************98887 PP == domain 2 score: 6.8 bits; conditional E-value: 0.0053 HHHTECTTEESSSCHHHHHHHHHHH CS Diphtheria_T 109 salGiadgivkhdteeiavnsiaLs 133 +a+Gi ++ v++ e iav+s Ls FUN_000107-T1 199 KAMGIMNSFVNDIFERIAVESSRLS 223 69******************98887 PP >> LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 0.0 0.012 23 33 60 .. 72 99 .. 66 100 .. 0.88 2 ? 1.0 0.3 0.32 6e+02 37 65 .] 144 172 .. 143 172 .. 0.86 3 ? 5.5 0.0 0.012 23 33 60 .. 214 241 .. 208 242 .. 0.88 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.012 LonB_AAA-LID 33 dllrEAdywArkegaelveaehVekAle 60 + +E++ ++ +++++++++++++A++ FUN_000107-T1 72 RIAVESSRLSLYNKKATISSREIQTAIR 99 4678**********************96 PP == domain 2 score: 1.0 bits; conditional E-value: 0.32 LonB_AAA-LID 37 EAdywArkegaelveaehVekAleekeyR 65 E+++ A k+g+++v ++ +A +k++R FUN_000107-T1 144 ESNVAAAKKGEKRVGKAKSGTAETAKRRR 172 99************999877777777776 PP == domain 3 score: 5.5 bits; conditional E-value: 0.012 LonB_AAA-LID 33 dllrEAdywArkegaelveaehVekAle 60 + +E++ ++ +++++++++++++A++ FUN_000107-T1 214 RIAVESSRLSLYNKKATISSREIQTAIR 241 4678**********************96 PP >> Arm_3 Atypical Arm repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.0 0.011 21 20 41 .. 47 68 .. 47 77 .. 0.89 2 ? 5.2 0.0 0.011 21 20 41 .. 189 210 .. 189 219 .. 0.89 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.011 Arm_3 20 QeHeneeIYkkAlkIiekYFse 41 Q H + I+ kA+ I+ ++ ++ FUN_000107-T1 47 QVHPDTGISSKAMGIMNSFVND 68 889999*************987 PP == domain 2 score: 5.2 bits; conditional E-value: 0.011 Arm_3 20 QeHeneeIYkkAlkIiekYFse 41 Q H + I+ kA+ I+ ++ ++ FUN_000107-T1 189 QVHPDTGISSKAMGIMNSFVND 210 889999*************987 PP >> LUC7 LUC7 N_terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.0 0.0086 16 76 120 .. 49 93 .. 11 116 .. 0.84 2 ? 5.1 0.0 0.012 22 76 120 .. 191 235 .. 176 244 .. 0.79 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0086 T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH CS LUC7 76 kkkygyeeellrflekliedvdrkiekakerlektqeekekeeek 120 + ++g +++ ++++++d+ ++i+ + +rl++ +++ + ++++ FUN_000107-T1 49 HPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSRE 93 4457888999***********************988777655444 PP == domain 2 score: 5.1 bits; conditional E-value: 0.012 T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH CS LUC7 76 kkkygyeeellrflekliedvdrkiekakerlektqeekekeeek 120 + ++g +++ ++++++d+ ++i+ + +rl++ +++ + ++++ FUN_000107-T1 191 HPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSRE 235 4457888999***********************988776655444 PP >> SAM_CEP-1_C CEP-1 C-terminal SAM domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.0 0.018 35 67 93 .. 61 85 .. 46 88 .. 0.88 2 ? 5.2 0.0 0.018 35 67 93 .. 203 227 .. 188 230 .. 0.88 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.018 SAM_CEP-1_C 67 LlkaFekdsdiFeklgidsekieklyk 93 +++ F + diFe++ ++s+ ++ ++k FUN_000107-T1 61 IMNSFVN--DIFERIAVESSRLSLYNK 85 6777777..************999886 PP == domain 2 score: 5.2 bits; conditional E-value: 0.018 SAM_CEP-1_C 67 LlkaFekdsdiFeklgidsekieklyk 93 +++ F + diFe++ ++s+ ++ ++k FUN_000107-T1 203 IMNSFVN--DIFERIAVESSRLSLYNK 227 6777777..************999886 PP >> Tt1218-like Type IV pilin Tt1218 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 0.0 0.023 43 17 52 .. 56 95 .. 49 99 .. 0.72 2 ? 4.7 0.0 0.023 43 17 52 .. 198 237 .. 191 241 .. 0.72 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.023 Tt1218-like 17 vqavnla....rdlaEriRaNpqaltqytaalaaaatstt 52 ++a+ ++ d+ Eri ++++ l+ y+++ + +++ ++ FUN_000107-T1 56 SKAMGIMnsfvNDIFERIAVESSRLSLYNKKATISSREIQ 95 556655522225889********99999998887777665 PP == domain 2 score: 4.7 bits; conditional E-value: 0.023 Tt1218-like 17 vqavnla....rdlaEriRaNpqaltqytaalaaaatstt 52 ++a+ ++ d+ Eri ++++ l+ y+++ + +++ ++ FUN_000107-T1 198 SKAMGIMnsfvNDIFERIAVESSRLSLYNKKATISSREIQ 237 556655522225889********99999998887777665 PP >> PHF20_AT-hook PHD finger protein 20, AT-hook # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 1.8 0.0047 8.8 62 88 .. 7 33 .. 3 39 .. 0.90 2 ? 8.7 1.2 0.0017 3.2 60 88 .. 147 175 .. 141 181 .. 0.88 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0047 PHF20_AT-hook 62 vdkksesdivKksQenlkeaKRkRgrp 88 + kk e+ ++K + ++ aKR+Rg+ FUN_000107-T1 7 AAKKGEKRVGKAKSGTAETAKRRRGKR 33 679**********************85 PP == domain 2 score: 8.7 bits; conditional E-value: 0.0017 PHF20_AT-hook 60 tqvdkksesdivKksQenlkeaKRkRgrp 88 + kk e+ ++K + ++ aKR+Rg+ FUN_000107-T1 147 VAAAKKGEKRVGKAKSGTAETAKRRRGKR 175 5678***********************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (267 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 585 (0.0236497); expected 494.7 (0.02) Passed bias filter: 353 (0.0142707); expected 494.7 (0.02) Passed Vit filter: 39 (0.00157665); expected 24.7 (0.001) Passed Fwd filter: 14 (0.000565977); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.32 # Mc/sec: 3228.83 // Query: FUN_000108-T1 [L=179] Description: FUN_000108 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-53 179.3 0.2 2.6e-35 121.7 0.3 2.0 2 Histone Core histone H2A/H2B/H3/H4 3.1e-10 40.6 0.0 6e-05 23.7 0.0 2.1 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y 9e-05 23.0 0.1 0.00021 21.8 0.0 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00064 20.5 0.1 0.0024 18.7 0.0 1.9 2 CENP-S CENP-S protein ------ inclusion threshold ------ 0.016 15.8 0.1 0.2 12.2 0.0 2.0 2 TFIID-31kDa Transcription initiation factor IID, 31kD s 0.021 15.2 0.0 0.039 14.3 0.0 1.5 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.6 0.0 2e-18 8.2e-15 42 120 .. 11 88 .. 4 90 .. 0.94 2 ! 121.7 0.3 6.4e-39 2.6e-35 47 122 .] 100 175 .. 96 175 .. 0.99 Alignments for each domain: == domain 1 score: 55.6 bits; conditional E-value: 2e-18 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000108-T1 11 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 88 578999999****************8.88999**********************************************9 PP == domain 2 score: 121.7 bits; conditional E-value: 6.4e-39 HSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 47 kstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvrlr 122 kst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000108-T1 100 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 175 79************************************************************************97 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.7 0.0 1.5e-08 6e-05 2 65 .] 24 87 .. 23 87 .. 0.98 2 ! 15.1 0.0 7.2e-06 0.03 2 64 .. 108 171 .. 107 171 .. 0.93 Alignments for each domain: == domain 1 score: 23.7 bits; conditional E-value: 1.5e-08 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000108-T1 24 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 87 69************************************************************98 PP == domain 2 score: 15.1 bits; conditional E-value: 7.2e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000108-T1 108 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 171 7888888887888889999******************************************998 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 2.4 1e+04 19 36 .. 68 84 .. 56 92 .. 0.58 2 ! 21.8 0.0 5.2e-08 0.00021 14 76 .. 112 173 .. 103 177 .. 0.85 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 2.4 CENP-T_C 19 rfakasgskaklskeale 36 ++a+ +k ++ + +l+ FUN_000108-T1 68 NAARD-NKKSRIIPRHLQ 84 44333.455566665555 PP == domain 2 score: 21.8 bits; conditional E-value: 5.2e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000108-T1 112 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 173 466666666666889*****************************************86.4454 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.0 0.59 2.4e+03 53 75 .. 70 92 .. 20 93 .. 0.65 2 ! 18.7 0.0 5.8e-07 0.0024 14 71 .. 114 173 .. 108 176 .. 0.83 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.59 CENP-S 53 AkHAkRstittdDvlLlaRrnes 75 A+ k+s i + + L +R++e+ FUN_000108-T1 70 ARDNKKSRIIPRHLQLAVRNDEE 92 45556666777777777777766 PP == domain 2 score: 18.7 bits; conditional E-value: 5.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000108-T1 114 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 173 444433312666789999*************************************99876 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.5 0.0 0.096 4e+02 40 70 .. 60 90 .. 40 106 .. 0.86 2 ? 12.2 0.0 4.9e-05 0.2 22 68 .. 127 173 .. 112 178 .. 0.87 Alignments for each domain: == domain 1 score: 1.5 bits; conditional E-value: 0.096 HHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqsr 70 +e+le A ++++kk++i ++lA+ FUN_000108-T1 60 AEILELAGNAARDNKKSRIIPRHLQLAVRND 90 6899999999999999999999999999764 PP == domain 2 score: 12.2 bits; conditional E-value: 4.9e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000108-T1 127 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 173 578889999***********************************955 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.0 9.5e-06 0.039 24 77 .] 80 136 .. 64 136 .. 0.79 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 9.5e-06 YebU_pre-PUA_dom 24 deeleLWqR.Dkei..WLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 +++l+L R D+e+ L +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000108-T1 80 PRHLQLAVRnDEELnkLLAGKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 136 5566666552455532466789999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (179 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 503 (0.0203347); expected 494.7 (0.02) Passed bias filter: 402 (0.0162516); expected 494.7 (0.02) Passed Vit filter: 43 (0.00173836); expected 24.7 (0.001) Passed Fwd filter: 6 (0.000242561); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.35 # Mc/sec: 1991.49 // Query: FUN_000109-T1 [L=224] Description: FUN_000109 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-26 91.3 4.3 1.9e-20 73.8 0.9 2.2 2 Histone Core histone H2A/H2B/H3/H4 5.1e-09 36.7 0.6 0.0041 17.8 0.1 2.6 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) 1.3e-06 28.9 0.0 4.8e-05 23.8 0.0 2.3 2 CENP-T_C Centromere kinetochore component CENP-T hist 7.9e-05 23.2 0.2 0.00046 20.7 0.0 2.2 2 TAF TATA box binding protein associated factor ( 0.00026 21.5 0.1 0.012 16.2 0.0 2.2 2 TFIID-31kDa Transcription initiation factor IID, 31kD su 0.0026 18.5 0.0 0.012 16.5 0.0 2.0 2 CENP-S CENP-S protein 0.0035 18.2 0.1 1 10.3 0.0 2.4 2 TFIID_20kDa Transcription initiation factor TFIID subuni 0.0078 16.7 0.1 4.1 8.0 0.0 2.7 2 LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain ------ inclusion threshold ------ 0.013 15.9 0.1 0.02 15.3 0.1 1.3 1 ARM_TT21 Tetratricopeptide repeat protein 21 ARM repe 0.013 15.9 0.2 0.02 15.3 0.2 1.2 1 Intron_maturas2 Type II intron maturase 0.19 12.2 0.1 0.44 11.0 0.1 1.6 1 Bromo_TP Bromodomain associated Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.1 7.4e-07 0.0017 87 119 .. 59 91 .. 35 94 .. 0.92 2 ! 73.8 0.9 8.3e-24 1.9e-20 24 121 .. 106 199 .. 92 200 .. 0.93 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 7.4e-07 HHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHH CS Histone 87 veallvelfeeAnllakhaKRvTltpkDiqlAv 119 ++ +l+ + ++A +++haKR+T+t+ D+ A+ FUN_000109-T1 59 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 6789************************99886 PP == domain 2 score: 73.8 bits; conditional E-value: 8.3e-24 SSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHH CS Histone 24 skkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAv 119 +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq+A+ FUN_000109-T1 106 AAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 197 56777899999999999***************************....************************************************ PP HH CS Histone 120 rl 121 rl FUN_000109-T1 198 RL 199 *8 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.1 1.8e-06 0.0041 32 65 .] 58 91 .. 32 91 .. 0.84 2 ! 16.8 0.0 3.8e-06 0.0084 8 65 .] 140 197 .. 139 197 .. 0.95 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 1.8e-06 HHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 32 cveefieevaseAaeickkekrKTikaehiklAv 65 ++ f+e v + A+ +++++krKT++a ++ A+ FUN_000109-T1 58 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 5778*************************98876 PP == domain 2 score: 16.8 bits; conditional E-value: 3.8e-06 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000109-T1 140 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 197 6799****88888.*****************************************9996 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 0.0 2.1e-08 4.8e-05 23 85 .. 40 102 .. 23 111 .. 0.75 2 ? 2.9 0.0 0.071 1.6e+02 28 72 .. 151 195 .. 137 215 .. 0.81 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 2.1e-08 CENP-T_C 23 asgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkrqrkvtsktt 85 ++g +++s e +++ f+e v +D +y++Ha+RKt+ Dv+ + + t++ + FUN_000109-T1 40 RRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALNSSSFRTASCK 102 3455567777777777888999**************************998877665555555 PP == domain 2 score: 2.9 bits; conditional E-value: 0.071 CENP-T_C 28 aklskealealeqasdeffeqvgeDLeayakHagRKtidesDvil 72 + +s +a+ + + ++ fe+++ + +++ ++ ti ++++ + FUN_000109-T1 151 TGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 195 668899999999999999999999888888888888887777665 PP >> TAF TATA box binding protein associated factor (TAF) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 0.0 2.1e-07 0.00046 35 65 .. 61 91 .. 27 92 .. 0.78 2 ? -0.2 0.0 0.7 1.6e+03 38 66 .] 170 198 .. 151 198 .. 0.80 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 2.1e-07 HHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS TAF 35 yrlkeivqeaakfmrhskRrkLtvaDvdsAL 65 l +++++a+ +++h+kR++ t+ Dv +AL FUN_000109-T1 61 VFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 55889**********************9998 PP == domain 2 score: -0.2 bits; conditional E-value: 0.7 HHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 38 keivqeaakfmrhskRrkLtvaDvdsALr 66 +i+ e+++ k +++++ ++ A+r FUN_000109-T1 170 ERIAVESSRLSLYNKKATISSREIQTAIR 198 56778888888888999999999999998 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 5.2e-06 0.012 38 70 .. 62 94 .. 34 102 .. 0.86 2 ? 3.4 0.0 0.048 1.1e+02 40 70 .. 170 200 .. 141 213 .. 0.79 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 5.2e-06 HHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 38 YttevledAkvysehakkkkidlddvrlAiqsr 70 + +v++dA +y ehak+k++++ dv A++s FUN_000109-T1 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYALNSS 94 6789*************************9875 PP == domain 2 score: 3.4 bits; conditional E-value: 0.048 HHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqsr 70 + +++ +s ++kk++i+ ++++Ai FUN_000109-T1 170 ERIAVESSRLSLYNKKATISSREIQTAIRLL 200 55667899999999**************865 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.0 5.2e-06 0.012 42 67 .. 63 88 .. 36 94 .. 0.88 2 ? -1.2 0.0 1.7 3.7e+03 30 49 .. 160 179 .. 137 195 .. 0.50 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 5.2e-06 CENP-S 42 lenlakDLeaFAkHAkRstittdDvl 67 len+ +D ++ +HAkR+t+t+ Dv+ FUN_000109-T1 63 LENVIRDAVTYTEHAKRKTVTAMDVV 88 789999*******************7 PP == domain 2 score: -1.2 bits; conditional E-value: 1.7 CENP-S 30 fiaaltelvykqlenlakDL 49 ++++ ++ ++++++ ++ L FUN_000109-T1 160 IMNSFVNDIFERIAVESSRL 179 22333333444444444444 PP >> TFIID_20kDa Transcription initiation factor TFIID subunit A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 0.0 0.017 38 33 62 .. 62 91 .. 57 94 .. 0.90 2 ! 10.3 0.0 0.00046 1 7 60 .. 142 195 .. 139 199 .. 0.93 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.017 HHHHHHHHHHHHHHHTT-SCE-HHHHHHHH CS TFIID_20kDa 33 FvesvtkkacklakhRksdklevrDiqlhl 62 F e+v+ a+ h k +++ + D+ + l FUN_000109-T1 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 99***********************98777 PP == domain 2 score: 10.3 bits; conditional E-value: 0.00046 HHHHHHSSSEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCE-HHHHHH CS TFIID_20kDa 7 dLvqqidseekLdedvedlLleiaddFvesvtkkacklakhRksdklevrDiql 60 ++q+ +++ + + ++ ++d e + ++++l + k ++++r iq FUN_000109-T1 142 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 195 5789************************************************95 PP >> LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 0.0 0.0018 4.1 31 65 .] 63 97 .. 62 97 .. 0.92 2 ! 5.9 0.0 0.0081 18 33 60 .. 171 198 .. 165 199 .. 0.88 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.0018 LonB_AAA-LID 31 iadllrEAdywArkegaelveaehVekAleekeyR 65 +++++r A ++ +++++++v+a +V Al+ +R FUN_000109-T1 63 LENVIRDAVTYTEHAKRKTVTAMDVVYALNSSSFR 97 57899************************988777 PP == domain 2 score: 5.9 bits; conditional E-value: 0.0081 LonB_AAA-LID 33 dllrEAdywArkegaelveaehVekAle 60 + +E++ ++ +++++++++++++A++ FUN_000109-T1 171 RIAVESSRLSLYNKKATISSREIQTAIR 198 4678**********************96 PP >> ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.3 0.1 8.8e-06 0.02 26 117 .. 106 200 .. 83 203 .. 0.70 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 8.8e-06 ARM_TT21 26 AlklLktAlklpg.kkkskekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 A+k ++ + ++ + +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000109-T1 106 AAKKGEKRVGKAKsGTAETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 200 44333333332220222333344445567778899999*******************98765266656788*********************998 PP >> Intron_maturas2 Type II intron maturase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.3 0.2 8.7e-06 0.02 32 109 .. 44 121 .. 27 152 .. 0.83 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 8.7e-06 Intron_maturas2 32 PrsvlrwidledrdIllry.kaiirgllnYYsfasnkkrlrerikyilrkscvkTLArKlklktvrkvikkfGkklsdl 109 +++ +i++e+r +l+ + + +ir + Y a++k+ + + y l+ s +T K + +k k+ Gk s FUN_000109-T1 44 VKRISGLIYEETRGVLKVFlENVIRDAVTYTEHAKRKTVTAMDVVYALNSSSFRTASCKCRA-AAKKGEKRVGKAKSGT 121 5678899**********99457*******************9*******************9.9999999999544433 PP >> Bromo_TP Bromodomain associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.1 0.00019 0.44 34 70 .. 57 93 .. 52 100 .. 0.87 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00019 HHHHHHHHHHHHHHHHHHHHCCCCS--STTCCCCCHH CS Bromo_TP 34 eiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70 ++++ +++++ ++a + eha R ++t Dvv +L+ FUN_000109-T1 57 GVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALNS 93 56778999999*********************99975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (224 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 827 (0.0334331); expected 494.7 (0.02) Passed bias filter: 499 (0.020173); expected 494.7 (0.02) Passed Vit filter: 43 (0.00173836); expected 24.7 (0.001) Passed Fwd filter: 11 (0.000444696); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.35 # Mc/sec: 2506.88 // Query: FUN_000110-T1 [L=164] Description: FUN_000110 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000110-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000110-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000110-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000110-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 1928.68 // Query: FUN_000111-T1 [L=129] Description: FUN_000111 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000111-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000111-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000111-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.32 # Mc/sec: 1578.99 // Query: FUN_000112-T1 [L=139] Description: FUN_000112 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000112-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000112-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000112-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000112-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000112-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000112-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000112-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000112-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000112-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000112-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.33 # Mc/sec: 1666.75 // Query: FUN_000113-T1 [L=129] Description: FUN_000113 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000113-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000113-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000113-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37 # Mc/sec: 1383.06 // Query: FUN_000114-T1 [L=238] Description: FUN_000114 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-63 213.3 0.5 6.7e-48 162.4 1.0 2.1 2 Histone Core histone H2A/H2B/H3/H4 1.7e-20 72.9 1.7 3.8e-20 71.8 1.7 1.7 1 Histone_H2A_C C-terminus of histone H2A 7.5e-10 39.4 0.0 0.00011 22.9 0.0 2.4 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y 0.00011 22.7 0.0 0.00027 21.4 0.0 1.7 1 CENP-T_C Centromere kinetochore component CENP-T his 0.00086 20.5 0.9 0.0013 19.9 0.9 1.3 1 PAF PCNA-associated factor histone like domain 0.0013 19.5 0.1 0.0039 18.0 0.0 1.7 2 CENP-S CENP-S protein ------ inclusion threshold ------ 0.024 15.2 0.1 0.23 12.0 0.0 2.2 2 TFIID-31kDa Transcription initiation factor IID, 31kD s 0.063 13.6 0.0 0.13 12.6 0.0 1.5 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 162.4 1.0 2.2e-51 6.7e-48 2 122 .] 7 132 .. 6 132 .. 0.97 2 ! 48.7 0.0 3.7e-16 1.1e-12 54 120 .. 136 201 .. 133 203 .. 0.95 Alignments for each domain: == domain 1 score: 162.4 bits; conditional E-value: 2.2e-51 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000114-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 102 68999***********99999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000114-T1 103 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 ****************************97 PP == domain 2 score: 48.7 bits; conditional E-value: 3.7e-16 SHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 54 qklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000114-T1 136 LQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 201 589**********8.88999**********************************************9 PP >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.8 1.7 1.2e-23 3.8e-20 1 34 [. 204 237 .. 204 238 .] 0.97 Alignments for each domain: == domain 1 score: 71.8 bits; conditional E-value: 1.2e-23 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000114-T1 204 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 237 9*******************************96 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 1.7e-05 0.052 2 64 .. 65 128 .. 64 128 .. 0.93 2 ! 22.9 0.0 3.4e-08 0.00011 2 65 .] 137 200 .. 136 200 .. 0.98 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 1.7e-05 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000114-T1 65 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 7888888887888889999******************************************998 PP == domain 2 score: 22.9 bits; conditional E-value: 3.4e-08 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000114-T1 137 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 200 69************************************************************98 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.0 8.8e-08 0.00027 14 76 .. 69 130 .. 59 149 .. 0.85 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 8.8e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000114-T1 69 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 130 466666666666889*****************************************86.4555 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.9 4.3e-07 0.0013 1 62 [. 1 58 [. 1 80 [. 0.90 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 4.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000114-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 58 99***998...9***************999999999988899999998.6999999999996 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.3e-06 0.0039 14 71 .. 71 130 .. 65 134 .. 0.83 2 ? -1.9 0.0 2 6.2e+03 53 76 .] 183 206 .. 160 206 .. 0.72 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.3e-06 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000114-T1 71 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 444433311666789999*************************************99876 PP == domain 2 score: -1.9 bits; conditional E-value: 2 CENP-S 53 AkHAkRstittdDvlLlaRrnesL 76 A+ k+s i + + L +R++e+L FUN_000114-T1 183 ARDNKKSRIIPRHLQLAVRNDEEL 206 455567777777888888887765 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 7.4e-05 0.23 23 70 .. 85 132 .. 69 148 .. 0.87 2 ? 0.6 0.0 0.26 8e+02 40 69 .. 173 202 .. 160 211 .. 0.85 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.4e-05 --SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 23 yeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiqsr 70 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA r FUN_000114-T1 85 FQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 78889999***********************************96655 PP == domain 2 score: 0.6 bits; conditional E-value: 0.26 HHHHHHHHHHHHHHTT---HHHHHHHHHHC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqs 69 +e+le A ++++kk++i ++lA+ FUN_000114-T1 173 AEILELAGNAARDNKKSRIIPRHLQLAVRN 202 689999999999999999999999999976 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 4.3e-05 0.13 35 77 .] 51 93 .. 49 93 .. 0.92 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.3e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000114-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66677889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (238 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 433 (0.0175049); expected 494.7 (0.02) Passed Vit filter: 36 (0.00145537); expected 24.7 (0.001) Passed Fwd filter: 8 (0.000323415); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36 # Mc/sec: 2621.29 // Query: FUN_000115-T1 [L=164] Description: FUN_000115 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000115-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000115-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000115-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000115-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.33 # Mc/sec: 1965.89 // Query: FUN_000116-T1 [L=129] Description: FUN_000116 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000116-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000116-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000116-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.34 # Mc/sec: 1493.58 // Query: FUN_000117-T1 [L=164] Description: FUN_000117 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000117-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000117-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000117-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000117-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.33 # Mc/sec: 1941.10 // Query: FUN_000118-T1 [L=129] Description: FUN_000118 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000118-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000118-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000118-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.33 # Mc/sec: 1519.91 // Query: FUN_000119-T1 [L=164] Description: FUN_000119 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000119-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000119-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000119-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000119-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.33 # Mc/sec: 1924.69 // Query: FUN_000120-T1 [L=129] Description: FUN_000120 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000120-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000120-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000120-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.34 # Mc/sec: 1497.52 // Query: FUN_000121-T1 [L=139] Description: FUN_000121 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000121-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000121-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000121-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000121-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000121-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000121-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000121-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000121-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000121-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000121-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.34 # Mc/sec: 1582.39 // Query: FUN_000122-T1 [L=215] Description: FUN_000122 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-26 92.6 3.9 2.4e-20 73.4 0.7 2.2 2 Histone Core histone H2A/H2B/H3/H4 4.6e-09 36.8 0.7 0.0038 17.9 0.1 2.6 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a 6.8e-09 36.2 0.1 2.6e-07 31.1 0.0 2.3 2 CENP-T_C Centromere kinetochore component CENP-T histon 2.8e-05 24.6 0.3 0.00015 22.3 0.1 2.2 2 TAF TATA box binding protein associated factor (TA 0.00022 22.1 0.0 0.97 10.4 0.0 2.4 2 TFIID_20kDa Transcription initiation factor TFIID subunit 0.00038 21.0 0.0 0.018 15.6 0.0 2.2 2 TFIID-31kDa Transcription initiation factor IID, 31kD subu 0.00046 21.0 0.0 0.002 18.9 0.0 2.0 2 CENP-S CENP-S protein ------ inclusion threshold ------ 0.016 15.7 0.2 8.3 7.0 0.0 2.6 2 LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain 0.023 15.1 0.1 0.034 14.5 0.1 1.3 1 ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat 0.066 13.7 0.0 0.17 12.4 0.0 1.6 1 Bromo_TP Bromodomain associated Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.6 0.2 2.3e-07 0.00058 87 121 .. 59 93 .. 35 94 .. 0.92 2 ! 73.4 0.7 9.7e-24 2.4e-20 25 121 .. 98 190 .. 92 191 .. 0.94 Alignments for each domain: == domain 1 score: 20.6 bits; conditional E-value: 2.3e-07 HHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHHH CS Histone 87 veallvelfeeAnllakhaKRvTltpkDiqlAvrl 121 ++ +l+ + ++A +++haKR+T+t+ D+ A++ FUN_000122-T1 59 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 6789*************************999875 PP == domain 2 score: 73.4 bits; conditional E-value: 9.7e-24 SB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 25 kkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq+A+r FUN_000122-T1 98 AKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIR 189 56778899999999999**************************....************************************************* PP H CS Histone 121 l 121 l FUN_000122-T1 190 L 190 8 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.1 1.6e-06 0.0038 32 65 .] 58 91 .. 32 91 .. 0.84 2 ! 16.9 0.0 3.2e-06 0.0078 8 65 .] 131 188 .. 130 188 .. 0.95 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 1.6e-06 HHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 32 cveefieevaseAaeickkekrKTikaehiklAv 65 ++ f+e v + A+ +++++krKT++a ++ A+ FUN_000122-T1 58 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 5778*************************98876 PP == domain 2 score: 16.9 bits; conditional E-value: 3.2e-06 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000122-T1 131 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 188 6799****88888.*****************************************9996 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.1 0.0 1.1e-10 2.6e-07 23 84 .. 40 101 .. 23 110 .. 0.80 2 ? 3.0 0.0 0.06 1.5e+02 28 72 .. 142 186 .. 128 206 .. 0.81 Alignments for each domain: == domain 1 score: 31.1 bits; conditional E-value: 1.1e-10 CENP-T_C 23 asgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkrqrkvtskt 84 ++g +++s e +++ f+e v +D +y++Ha+RKt+ Dv+ +krq+ +k FUN_000122-T1 40 RRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGPAAKKG 101 3455567777777777888999*********************************9877765 PP == domain 2 score: 3.0 bits; conditional E-value: 0.06 CENP-T_C 28 aklskealealeqasdeffeqvgeDLeayakHagRKtidesDvil 72 + +s +a+ + + ++ fe+++ + +++ ++ ti ++++ + FUN_000122-T1 142 TGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 186 668899999999999999999999888888888888887777665 PP >> TAF TATA box binding protein associated factor (TAF) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.1 6.2e-08 0.00015 35 66 .] 61 92 .. 27 92 .. 0.78 2 ? -0.1 0.0 0.6 1.5e+03 38 66 .] 161 189 .. 142 189 .. 0.80 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 6.2e-08 HHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 35 yrlkeivqeaakfmrhskRrkLtvaDvdsALr 66 l +++++a+ +++h+kR++ t+ Dv +AL+ FUN_000122-T1 61 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92 55889*************************97 PP == domain 2 score: -0.1 bits; conditional E-value: 0.6 HHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 38 keivqeaakfmrhskRrkLtvaDvdsALr 66 +i+ e+++ k +++++ ++ A+r FUN_000122-T1 161 ERIAVESSRLSLYNKKATISSREIQTAIR 189 56778888888888999999999999998 PP >> TFIID_20kDa Transcription initiation factor TFIID subunit A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.2 0.0 0.00096 2.4 33 65 .. 62 94 .. 57 95 .. 0.94 2 ! 10.4 0.0 0.00039 0.97 7 60 .. 133 186 .. 130 190 .. 0.93 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00096 HHHHHHHHHHHHHHHTT-SCE-HHHHHHHHHHT CS TFIID_20kDa 33 FvesvtkkacklakhRksdklevrDiqlhlern 65 F e+v+ a+ h k +++ + D+ + l+r+ FUN_000122-T1 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 99*****************************96 PP == domain 2 score: 10.4 bits; conditional E-value: 0.00039 HHHHHHSSSEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCE-HHHHHH CS TFIID_20kDa 7 dLvqqidseekLdedvedlLleiaddFvesvtkkacklakhRksdklevrDiql 60 ++q+ +++ + + ++ ++d e + ++++l + k ++++r iq FUN_000122-T1 133 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 186 5789************************************************95 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.0 7.2e-06 0.018 38 70 .. 62 94 .. 34 105 .. 0.86 2 ? 3.5 0.0 0.041 1e+02 40 70 .. 161 191 .. 132 204 .. 0.79 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 7.2e-06 HHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 38 YttevledAkvysehakkkkidlddvrlAiqsr 70 + +v++dA +y ehak+k++++ dv A++ + FUN_000122-T1 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 6789***********************999765 PP == domain 2 score: 3.5 bits; conditional E-value: 0.041 HHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqsr 70 + +++ +s ++kk++i+ ++++Ai FUN_000122-T1 161 ERIAVESSRLSLYNKKATISSREIQTAIRLL 191 55667899999999**************875 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 8.2e-07 0.002 42 73 .. 63 94 .. 36 96 .. 0.89 2 ? -1.0 0.0 1.4 3.4e+03 30 49 .. 151 170 .. 128 187 .. 0.50 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 8.2e-07 CENP-S 42 lenlakDLeaFAkHAkRstittdDvlLlaRrn 73 len+ +D ++ +HAkR+t+t+ Dv+ ++r+ FUN_000122-T1 63 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 789999*******************9988875 PP == domain 2 score: -1.0 bits; conditional E-value: 1.4 CENP-S 30 fiaaltelvykqlenlakDL 49 ++++ ++ ++++++ ++ L FUN_000122-T1 151 IMNSFVNDIFERIAVESSRL 170 22333333444444444444 PP >> LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 0.0 0.0033 8.3 31 62 .. 63 94 .. 62 95 .. 0.91 2 ? 6.0 0.0 0.0069 17 33 60 .. 162 189 .. 156 190 .. 0.88 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.0033 LonB_AAA-LID 31 iadllrEAdywArkegaelveaehVekAleek 62 +++++r A ++ +++++++v+a +V Al+ + FUN_000122-T1 63 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 5789999*********************9865 PP == domain 2 score: 6.0 bits; conditional E-value: 0.0069 LonB_AAA-LID 33 dllrEAdywArkegaelveaehVekAle 60 + +E++ ++ +++++++++++++A++ FUN_000122-T1 162 RIAVESSRLSLYNKKATISSREIQTAIR 189 4678**********************96 PP >> ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 0.1 1.4e-05 0.034 42 117 .. 114 191 .. 65 194 .. 0.77 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.4e-05 ARM_TT21 42 skekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000122-T1 114 ETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 191 223333345556677889999*******************98765266656788*********************998 PP >> Bromo_TP Bromodomain associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 6.7e-05 0.17 34 70 .. 57 93 .. 52 97 .. 0.90 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 6.7e-05 HHHHHHHHHHHHHHHHHHHHCCCCS--STTCCCCCHH CS Bromo_TP 34 eiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70 ++++ +++++ ++a + eha R ++t Dvv +L++ FUN_000122-T1 57 GVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 56778999999************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (215 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 676 (0.0273286); expected 494.7 (0.02) Passed bias filter: 437 (0.0176666); expected 494.7 (0.02) Passed Vit filter: 41 (0.0016575); expected 24.7 (0.001) Passed Fwd filter: 10 (0.000404269); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.35 # Mc/sec: 2416.69 // Query: FUN_000123-T1 [L=164] Description: FUN_000123 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000123-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000123-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000123-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000123-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.33 # Mc/sec: 1919.82 // Query: FUN_000124-T1 [L=129] Description: FUN_000124 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000124-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000124-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000124-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.33 # Mc/sec: 1521.41 // Query: FUN_000125-T1 [L=164] Description: FUN_000125 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000125-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000125-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000125-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000125-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.33 # Mc/sec: 1933.04 // Query: FUN_000126-T1 [L=129] Description: FUN_000126 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000126-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000126-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000126-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.33 # Mc/sec: 1520.99 // Query: FUN_000127-T1 [L=164] Description: FUN_000127 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000127-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000127-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000127-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000127-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35 # Mc/sec: 1836.88 // Query: FUN_000128-T1 [L=129] Description: FUN_000128 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000128-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000128-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000128-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35 # Mc/sec: 1437.34 // Query: FUN_000129-T1 [L=164] Description: FUN_000129 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000129-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000129-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000129-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000129-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.34 # Mc/sec: 1866.86 // Query: FUN_000130-T1 [L=129] Description: FUN_000130 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000130-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000130-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000130-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.32 # Mc/sec: 1562.81 // Query: FUN_000131-T1 [L=139] Description: FUN_000131 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000131-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000131-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000131-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000131-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000131-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000131-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000131-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000131-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000131-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000131-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.32 # Mc/sec: 1675.59 // Query: FUN_000132-T1 [L=129] Description: FUN_000132 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000132-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000132-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000132-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35 # Mc/sec: 1438.97 // Query: FUN_000133-T1 [L=103] Description: FUN_000133 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-08 33.1 0.1 9.1e-08 32.6 0.1 1.3 1 CENP-T_C Centromere kinetochore component CENP-T histon 2.4e-05 24.8 0.2 3.5e-05 24.3 0.2 1.4 1 TAF TATA box binding protein associated factor (TA 0.00011 22.9 0.3 0.00012 22.7 0.3 1.4 1 Histone Core histone H2A/H2B/H3/H4 0.0003 21.6 0.1 0.0004 21.2 0.1 1.4 1 CENP-S CENP-S protein 0.00047 20.8 0.3 0.00087 20.0 0.2 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a 0.0029 18.1 0.0 0.0033 18.0 0.0 1.1 1 TFIID-31kDa Transcription initiation factor IID, 31kD subu ------ inclusion threshold ------ 0.025 15.0 0.0 0.042 14.3 0.0 1.3 1 Bromo_TP Bromodomain associated 0.25 11.5 0.2 0.31 11.3 0.2 1.0 1 UPF0137 Uncharacterised protein family (UPF0137) Domain annotation for each model (and alignments): >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.6 0.1 2.9e-11 9.1e-08 22 79 .. 39 96 .. 25 99 .. 0.81 Alignments for each domain: == domain 1 score: 32.6 bits; conditional E-value: 2.9e-11 CENP-T_C 22 kasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79 ++g +++s e +++ f+e v +D +y++Ha+RKt+ Dv+ +krq++ FUN_000133-T1 39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 34456667777777888889999*********************************86 PP >> TAF TATA box binding protein associated factor (TAF) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.2 1.1e-08 3.5e-05 33 66 .] 59 92 .. 27 92 .. 0.75 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 1.1e-08 HHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 33 veyrlkeivqeaakfmrhskRrkLtvaDvdsALr 66 ++ l +++++a+ +++h+kR++ t+ Dv +AL+ FUN_000133-T1 59 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92 5566889*************************98 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.7 0.3 3.9e-08 0.00012 87 121 .. 59 93 .. 16 94 .. 0.92 Alignments for each domain: == domain 1 score: 22.7 bits; conditional E-value: 3.9e-08 HHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHHH CS Histone 87 veallvelfeeAnllakhaKRvTltpkDiqlAvrl 121 ++ +l+ + ++A +++haKR+T+t+ D+ A++ FUN_000133-T1 59 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 6789*************************999975 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.1 1.3e-07 0.0004 42 73 .. 63 94 .. 25 97 .. 0.88 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 1.3e-07 CENP-S 42 lenlakDLeaFAkHAkRstittdDvlLlaRrn 73 len+ +D ++ +HAkR+t+t+ Dv+ ++r+ FUN_000133-T1 63 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 789999*******************9998885 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.2 2.8e-07 0.00087 32 65 .] 58 91 .. 30 91 .. 0.82 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 2.8e-07 HHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 32 cveefieevaseAaeickkekrKTikaehiklAv 65 ++ f+e v + A+ +++++krKT++a ++ A+ FUN_000133-T1 58 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 6788*************************98876 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.1e-06 0.0033 38 70 .. 62 94 .. 32 100 .. 0.82 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.1e-06 HHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 38 YttevledAkvysehakkkkidlddvrlAiqsr 70 + +v++dA +y ehak+k++++ dv A++ + FUN_000133-T1 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 6789************************99876 PP >> Bromo_TP Bromodomain associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.0 1.4e-05 0.042 34 70 .. 57 93 .. 51 96 .. 0.90 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 1.4e-05 HHHHHHHHHHHHHHHHHHHHCCCCS--STTCCCCCHH CS Bromo_TP 34 eiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70 ++++ +++++ ++a + eha R ++t Dvv +L++ FUN_000133-T1 57 GVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 67778999999************************97 PP >> UPF0137 Uncharacterised protein family (UPF0137) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.2 0.0001 0.31 141 212 .. 23 94 .. 18 99 .. 0.92 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.0001 UPF0137 141 lkaeveslPrqavYtLasRegslekkeeiienynGetktelleiirktfPlldtdrRqknlsekllellakl 212 l+ +++ + + a+ La R g + i e+ +G k l ++ir + +++ +R++ + ++ l++ FUN_000133-T1 23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 7889999**************9999999********************************999999999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (103 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 771 (0.0311691); expected 494.7 (0.02) Passed bias filter: 652 (0.0263583); expected 494.7 (0.02) Passed Vit filter: 57 (0.00230433); expected 24.7 (0.001) Passed Fwd filter: 8 (0.000323415); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.32 # Mc/sec: 1260.34 // Query: FUN_000134-T1 [L=164] Description: FUN_000134 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000134-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000134-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000134-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000134-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.35 # Mc/sec: 1854.45 // Query: FUN_000135-T1 [L=181] Description: FUN_000135 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-21 75.6 1.2 6.3e-21 75.3 1.2 1.2 1 Histone Core histone H2A/H2B/H3/H4 0.0018 18.9 0.0 0.0056 17.4 0.0 1.8 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) ------ inclusion threshold ------ 0.014 15.8 0.1 0.019 15.4 0.1 1.1 1 ARM_TT21 Tetratricopeptide repeat protein 21 ARM repe 0.096 13.1 0.1 0.18 12.2 0.1 1.4 1 RNase_P-MRP_p29 Ribonuclease P/MRP, subunit p29 Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.3 1.2 1e-24 6.3e-21 21 121 .. 60 156 .. 19 157 .. 0.91 Alignments for each domain: == domain 1 score: 75.3 bits; conditional E-value: 1e-24 .SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHH CS Histone 21 sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiq 116 + + +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq FUN_000135-T1 60 KVAAAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQ 151 67788999999************************************....********************************************* PP HHHHH CS Histone 117 lAvrl 121 +A+rl FUN_000135-T1 152 TAIRL 156 ****8 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 0.0 9.1e-07 0.0056 8 65 .] 97 154 .. 96 154 .. 0.95 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 9.1e-07 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000135-T1 97 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 154 679*****88888.*****************************************9996 PP >> ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.4 0.1 3e-06 0.019 41 117 .. 79 157 .. 51 161 .. 0.73 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 3e-06 ARM_TT21 41 kskekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000135-T1 79 AETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 157 2222333345566777889999*******************98765266656788**********************98 PP >> RNase_P-MRP_p29 Ribonuclease P/MRP, subunit p29 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.1 2.9e-05 0.18 25 55 .. 46 76 .. 37 95 .. 0.91 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 2.9e-05 TEEEEEEEEETTEEEEEECTTEEEEEESTTE CS RNase_P-MRP_p29 25 GikGivvdEtkntlkivtkenkvktipKegs 55 i+G++ +Et+ +lk++ ++ k++ K++s FUN_000135-T1 46 RISGLIYEETRGVLKVAAAKKGEKRVGKAKS 76 689************************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (181 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 686 (0.0277329); expected 494.7 (0.02) Passed bias filter: 433 (0.0175049); expected 494.7 (0.02) Passed Vit filter: 33 (0.00133409); expected 24.7 (0.001) Passed Fwd filter: 4 (0.000161708); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 2136.02 // Query: FUN_000136-T1 [L=164] Description: FUN_000136 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000136-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000136-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000136-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000136-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.32 # Mc/sec: 2028.76 // Query: FUN_000137-T1 [L=125] Description: FUN_000137 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-21 74.2 1.7 1.3e-20 73.3 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.5e-15 57.3 0.0 3.1e-15 56.9 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 1.8e-05 25.3 0.0 2.6e-05 24.8 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.3 1.7 1.6e-24 1.3e-20 1 34 [. 91 124 .. 91 125 .] 0.97 Alignments for each domain: == domain 1 score: 73.3 bits; conditional E-value: 1.6e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000137-T1 91 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 124 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.9 0.0 3.8e-19 3.1e-15 42 120 .. 11 88 .. 4 90 .. 0.94 Alignments for each domain: == domain 1 score: 56.9 bits; conditional E-value: 3.8e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000137-T1 11 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 88 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.8 0.0 3.1e-09 2.6e-05 2 65 .] 24 87 .. 23 87 .. 0.98 Alignments for each domain: == domain 1 score: 24.8 bits; conditional E-value: 3.1e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000137-T1 24 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 87 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (125 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 483 (0.0195262); expected 494.7 (0.02) Passed bias filter: 409 (0.0165346); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35 # Mc/sec: 1405.05 // Query: FUN_000138-T1 [L=139] Description: FUN_000138 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000138-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000138-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000138-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000138-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000138-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000138-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000138-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000138-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000138-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000138-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.34 # Mc/sec: 1610.06 // Query: FUN_000139-T1 [L=129] Description: FUN_000139 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000139-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000139-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000139-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.32 # Mc/sec: 1562.10 // Query: FUN_000140-T1 [L=238] Description: FUN_000140 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-63 213.3 0.5 6.7e-48 162.4 1.0 2.1 2 Histone Core histone H2A/H2B/H3/H4 1.7e-20 72.9 1.7 3.8e-20 71.8 1.7 1.7 1 Histone_H2A_C C-terminus of histone H2A 7.5e-10 39.4 0.0 0.00011 22.9 0.0 2.4 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y 0.00011 22.7 0.0 0.00027 21.4 0.0 1.7 1 CENP-T_C Centromere kinetochore component CENP-T his 0.00086 20.5 0.9 0.0013 19.9 0.9 1.3 1 PAF PCNA-associated factor histone like domain 0.0013 19.5 0.1 0.0039 18.0 0.0 1.7 2 CENP-S CENP-S protein ------ inclusion threshold ------ 0.024 15.2 0.1 0.23 12.0 0.0 2.2 2 TFIID-31kDa Transcription initiation factor IID, 31kD s 0.063 13.6 0.0 0.13 12.6 0.0 1.5 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 162.4 1.0 2.2e-51 6.7e-48 2 122 .] 7 132 .. 6 132 .. 0.97 2 ! 48.7 0.0 3.7e-16 1.1e-12 54 120 .. 136 201 .. 133 203 .. 0.95 Alignments for each domain: == domain 1 score: 162.4 bits; conditional E-value: 2.2e-51 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000140-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 102 68999***********99999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000140-T1 103 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 ****************************97 PP == domain 2 score: 48.7 bits; conditional E-value: 3.7e-16 SHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 54 qklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000140-T1 136 LQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 201 589**********8.88999**********************************************9 PP >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.8 1.7 1.2e-23 3.8e-20 1 34 [. 204 237 .. 204 238 .] 0.97 Alignments for each domain: == domain 1 score: 71.8 bits; conditional E-value: 1.2e-23 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000140-T1 204 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 237 9*******************************96 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 1.7e-05 0.052 2 64 .. 65 128 .. 64 128 .. 0.93 2 ! 22.9 0.0 3.4e-08 0.00011 2 65 .] 137 200 .. 136 200 .. 0.98 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 1.7e-05 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000140-T1 65 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 7888888887888889999******************************************998 PP == domain 2 score: 22.9 bits; conditional E-value: 3.4e-08 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000140-T1 137 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 200 69************************************************************98 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.0 8.8e-08 0.00027 14 76 .. 69 130 .. 59 149 .. 0.85 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 8.8e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000140-T1 69 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 130 466666666666889*****************************************86.4555 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.9 4.3e-07 0.0013 1 62 [. 1 58 [. 1 80 [. 0.90 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 4.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000140-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 58 99***998...9***************999999999988899999998.6999999999996 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.3e-06 0.0039 14 71 .. 71 130 .. 65 134 .. 0.83 2 ? -1.9 0.0 2 6.2e+03 53 76 .] 183 206 .. 160 206 .. 0.72 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.3e-06 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000140-T1 71 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 444433311666789999*************************************99876 PP == domain 2 score: -1.9 bits; conditional E-value: 2 CENP-S 53 AkHAkRstittdDvlLlaRrnesL 76 A+ k+s i + + L +R++e+L FUN_000140-T1 183 ARDNKKSRIIPRHLQLAVRNDEEL 206 455567777777888888887765 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 7.4e-05 0.23 23 70 .. 85 132 .. 69 148 .. 0.87 2 ? 0.6 0.0 0.26 8e+02 40 69 .. 173 202 .. 160 211 .. 0.85 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.4e-05 --SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 23 yeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiqsr 70 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA r FUN_000140-T1 85 FQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 78889999***********************************96655 PP == domain 2 score: 0.6 bits; conditional E-value: 0.26 HHHHHHHHHHHHHHTT---HHHHHHHHHHC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqs 69 +e+le A ++++kk++i ++lA+ FUN_000140-T1 173 AEILELAGNAARDNKKSRIIPRHLQLAVRN 202 689999999999999999999999999976 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 4.3e-05 0.13 35 77 .] 51 93 .. 49 93 .. 0.92 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.3e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000140-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66677889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (238 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 433 (0.0175049); expected 494.7 (0.02) Passed Vit filter: 36 (0.00145537); expected 24.7 (0.001) Passed Fwd filter: 8 (0.000323415); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.37 # Mc/sec: 2538.13 // Query: FUN_000141-T1 [L=229] Description: FUN_000141 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-27 94.1 2.8 1.9e-20 73.8 0.6 2.2 2 Histone Core histone H2A/H2B/H3/H4 6.4e-09 36.4 0.6 0.0043 17.8 0.1 2.5 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a 1.2e-08 35.5 0.1 5.6e-07 30.1 0.0 2.2 2 CENP-T_C Centromere kinetochore component CENP-T histon 3.4e-05 24.4 0.3 0.00017 22.1 0.1 2.1 2 TAF TATA box binding protein associated factor (TA 0.00027 21.8 0.0 1.1 10.3 0.0 2.3 2 TFIID_20kDa Transcription initiation factor TFIID subunit 0.00045 21.0 0.0 0.0021 18.9 0.0 2.0 2 CENP-S CENP-S protein 0.00046 20.7 0.1 0.017 15.6 0.0 2.2 2 TFIID-31kDa Transcription initiation factor IID, 31kD subu 0.0019 18.6 0.1 0.0034 17.8 0.1 1.4 1 ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat ------ inclusion threshold ------ 0.015 15.8 0.2 6.7 7.3 0.0 2.6 2 LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain 0.079 13.4 0.0 0.19 12.2 0.0 1.5 1 Bromo_TP Bromodomain associated 0.11 13.0 0.1 0.16 12.4 0.1 1.3 1 YscO-like YscO-like protein Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.8 0.6 8.5e-24 1.9e-20 24 121 .. 7 100 .. 2 101 .. 0.95 2 ! 20.6 0.1 2.5e-07 0.00056 87 121 .. 185 219 .. 156 220 .. 0.92 Alignments for each domain: == domain 1 score: 73.8 bits; conditional E-value: 8.5e-24 SSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHH CS Histone 24 skkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAv 119 +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq+A+ FUN_000141-T1 7 AAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 98 5678889999999999****************************....************************************************ PP HH CS Histone 120 rl 121 rl FUN_000141-T1 99 RL 100 *8 PP == domain 2 score: 20.6 bits; conditional E-value: 2.5e-07 HHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHHH CS Histone 87 veallvelfeeAnllakhaKRvTltpkDiqlAvrl 121 ++ +l+ + ++A +++haKR+T+t+ D+ A++ FUN_000141-T1 185 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 219 6789*************************999875 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.0 3.9e-06 0.0088 8 65 .] 41 98 .. 40 98 .. 0.95 2 ! 17.8 0.1 1.9e-06 0.0043 32 65 .] 184 217 .. 158 217 .. 0.84 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 3.9e-06 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000141-T1 41 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 98 6799****88888.*****************************************9996 PP == domain 2 score: 17.8 bits; conditional E-value: 1.9e-06 HHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 32 cveefieevaseAaeickkekrKTikaehiklAv 65 ++ f+e v + A+ +++++krKT++a ++ A+ FUN_000141-T1 184 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 217 5778*************************98876 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.0 0.053 1.2e+02 27 75 .. 51 99 .. 38 114 .. 0.81 2 ! 30.1 0.0 2.5e-10 5.6e-07 23 79 .. 166 222 .. 150 225 .. 0.81 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 0.053 CENP-T_C 27 kaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmk 75 + +s +a+ + + ++ fe+++ + +++ ++ ti ++++ + ++ FUN_000141-T1 51 DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIR 99 5678999****************99999999888888998888776655 PP == domain 2 score: 30.1 bits; conditional E-value: 2.5e-10 CENP-T_C 23 asgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79 ++g +++s e +++ f+e v +D +y++Ha+RKt+ Dv+ +krq++ FUN_000141-T1 166 RRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 222 3455566777777777888999*********************************86 PP >> TAF TATA box binding protein associated factor (TAF) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.0 0.72 1.6e+03 38 66 .] 71 99 .. 52 99 .. 0.80 2 ! 22.1 0.1 7.6e-08 0.00017 35 66 .] 187 218 .. 153 218 .. 0.78 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.72 HHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 38 keivqeaakfmrhskRrkLtvaDvdsALr 66 +i+ e+++ k +++++ ++ A+r FUN_000141-T1 71 ERIAVESSRLSLYNKKATISSREIQTAIR 99 56778888888888999999999999998 PP == domain 2 score: 22.1 bits; conditional E-value: 7.6e-08 HHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 35 yrlkeivqeaakfmrhskRrkLtvaDvdsALr 66 l +++++a+ +++h+kR++ t+ Dv +AL+ FUN_000141-T1 187 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 218 55889*************************97 PP >> TFIID_20kDa Transcription initiation factor TFIID subunit A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.3 0.0 0.00048 1.1 7 60 .. 43 96 .. 40 100 .. 0.93 2 ! 9.0 0.0 0.0012 2.6 33 65 .. 188 220 .. 183 221 .. 0.94 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00048 HHHHHHSSSEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCE-HHHHHH CS TFIID_20kDa 7 dLvqqidseekLdedvedlLleiaddFvesvtkkacklakhRksdklevrDiql 60 ++q+ +++ + + ++ ++d e + ++++l + k ++++r iq FUN_000141-T1 43 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 96 5789************************************************95 PP == domain 2 score: 9.0 bits; conditional E-value: 0.0012 HHHHHHHHHHHHHHHTT-SCE-HHHHHHHHHHT CS TFIID_20kDa 33 FvesvtkkacklakhRksdklevrDiqlhlern 65 F e+v+ a+ h k +++ + D+ + l+r+ FUN_000141-T1 188 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 220 99*****************************96 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.2 0.0 1.7 3.8e+03 30 49 .. 61 80 .. 38 97 .. 0.51 2 ! 18.9 0.0 9.3e-07 0.0021 42 73 .. 189 220 .. 167 223 .. 0.89 Alignments for each domain: == domain 1 score: -1.2 bits; conditional E-value: 1.7 CENP-S 30 fiaaltelvykqlenlakDL 49 ++++ ++ ++++++ ++ L FUN_000141-T1 61 IMNSFVNDIFERIAVESSRL 80 22333333444444444444 PP == domain 2 score: 18.9 bits; conditional E-value: 9.3e-07 CENP-S 42 lenlakDLeaFAkHAkRstittdDvlLlaRrn 73 len+ +D ++ +HAkR+t+t+ Dv+ ++r+ FUN_000141-T1 189 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 220 789999*******************9998885 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.0 0.057 1.3e+02 40 69 .. 71 100 .. 42 113 .. 0.80 2 ! 15.6 0.0 7.8e-06 0.017 38 70 .. 188 220 .. 160 226 .. 0.85 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.057 HHHHHHHHHHHHHHTT---HHHHHHHHHHC CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqs 69 + +++ +s ++kk++i+ ++++Ai FUN_000141-T1 71 ERIAVESSRLSLYNKKATISSREIQTAIRL 100 55667889999999*************986 PP == domain 2 score: 15.6 bits; conditional E-value: 7.8e-06 HHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 38 YttevledAkvysehakkkkidlddvrlAiqsr 70 + +v++dA +y ehak+k++++ dv A++ + FUN_000141-T1 188 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 220 6789************************99866 PP >> ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.1 1.5e-06 0.0034 42 129 .. 24 113 .. 5 117 .. 0.79 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 1.5e-06 ARM_TT21 42 skekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelLkkikpdqpyylq 129 +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL ++ + +++++ FUN_000141-T1 24 ETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLLLPVTHSVNNHVR 113 233333445566778899999*******************98765266656788************************999998887765 PP >> LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.0 0.0084 19 33 60 .. 72 99 .. 66 100 .. 0.88 2 ? 7.3 0.0 0.003 6.7 31 62 .. 189 220 .. 188 222 .. 0.90 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0084 LonB_AAA-LID 33 dllrEAdywArkegaelveaehVekAle 60 + +E++ ++ +++++++++++++A++ FUN_000141-T1 72 RIAVESSRLSLYNKKATISSREIQTAIR 99 4678**********************96 PP == domain 2 score: 7.3 bits; conditional E-value: 0.003 LonB_AAA-LID 31 iadllrEAdywArkegaelveaehVekAleek 62 +++++r A ++ +++++++v+a +V Al+ + FUN_000141-T1 189 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 220 578999**********************9876 PP >> Bromo_TP Bromodomain associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 8.4e-05 0.19 34 70 .. 183 219 .. 178 222 .. 0.90 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 8.4e-05 HHHHHHHHHHHHHHHHHHHHCCCCS--STTCCCCCHH CS Bromo_TP 34 eiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70 ++++ +++++ ++a + eha R ++t Dvv +L++ FUN_000141-T1 183 GVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 219 56778999999************************97 PP >> YscO-like YscO-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.1 7e-05 0.16 39 114 .. 24 101 .. 1 117 [. 0.72 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 7e-05 HHHHHHHHHHHHHHHHHHHH.HHH.HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS YscO-like 39 akleaerdkvlkhkkaKlqq.lrd.eldkGttsdkikkmkeyikvvkeelkqeekkvedqkekVevAkkklEeareel 114 + + r k+++ + + + l++ + d G +s+++ +m+++++ + e++++e ++ ++k ++ ++++ a l FUN_000141-T1 24 ETAKRRRGKRKESYAIYIYKvLKQvHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRLL 101 33344455566666666666455424599*****************************************99987666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (229 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 724 (0.0292691); expected 494.7 (0.02) Passed bias filter: 580 (0.0234476); expected 494.7 (0.02) Passed Vit filter: 56 (0.00226391); expected 24.7 (0.001) Passed Fwd filter: 11 (0.000444696); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38 # Mc/sec: 2337.77 // Query: FUN_000142-T1 [L=221] Description: FUN_000142 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-17 64.0 0.2 1.5e-07 31.9 0.0 2.3 2 CENP-T_C Centromere kinetochore component CENP-T hist 5.4e-12 46.1 0.5 0.00016 22.2 0.1 2.5 2 TAF TATA box binding protein associated factor ( 7.4e-11 42.8 0.5 0.0005 20.8 0.1 2.3 2 Histone Core histone H2A/H2B/H3/H4 5.9e-10 39.8 0.4 0.0019 19.0 0.0 2.5 2 CENP-S CENP-S protein 5.8e-09 36.5 1.9 0.004 17.8 0.1 2.7 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) 4e-08 33.8 0.1 0.011 16.3 0.0 2.1 2 TFIID-31kDa Transcription initiation factor IID, 31kD su 1.5e-06 28.6 0.4 0.041 14.3 0.1 2.3 2 Bromo_TP Bromodomain associated 0.00058 20.8 0.1 2.5 9.1 0.0 2.4 2 TFIID_20kDa Transcription initiation factor TFIID subuni 0.00064 20.1 0.2 1.7 9.1 0.0 2.2 2 TAFII28 hTAFII28-like protein conserved region 0.0018 18.6 1.2 1.4 9.1 0.1 2.0 2 UPF0137 Uncharacterised protein family (UPF0137) 0.0077 16.7 0.1 6.4 7.3 0.0 2.5 2 LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain 0.0079 16.8 2.1 5.5 7.7 0.2 2.8 2 E3_binding e3 binding domain 0.008 16.3 0.0 2.4 8.2 0.0 2.1 2 PrkA PrkA serine protein kinase C-terminal domain 0.0086 16.5 0.4 4.2 7.7 0.0 2.1 2 HIGH_NTase1_ass Cytidyltransferase-related C-terminal region ------ inclusion threshold ------ 0.012 16.3 0.0 5.1 7.9 0.0 2.8 2 CEP76_N CEP76 N-terminal domain 0.041 14.5 0.0 10 6.7 0.0 2.1 2 Csa5_I-A Type-I-A Cascade subunit Csa5 0.053 14.0 2.0 15 6.2 0.1 2.9 3 SAM_TNK SAM domain-like 0.058 13.9 0.2 15 6.1 0.0 2.3 2 TFIID-18kDa Transcription initiation factor IID, 18kD su 0.088 13.0 0.0 18 5.6 0.0 2.2 2 dUTPase dUTPase 0.11 12.5 0.0 5.8 6.8 0.0 2.1 2 pAdhesive_6 Putative adhesive domain (group 6) 0.16 12.4 3.0 4 7.8 0.2 2.1 2 Flavi_DEAD Flavivirus DEAD domain 0.23 11.2 0.2 11 5.7 0.0 2.1 2 TARBP1 TARBP1 domain Domain annotation for each model (and alignments): >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.9 0.0 1.3e-10 1.5e-07 23 83 .. 40 100 .. 23 106 .. 0.80 2 ! 30.2 0.0 4.6e-10 5.2e-07 23 79 .. 158 214 .. 142 217 .. 0.81 Alignments for each domain: == domain 1 score: 31.9 bits; conditional E-value: 1.3e-10 CENP-T_C 23 asgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkrqrkvtsk 83 ++g +++s e +++ f+e v +D +y++Ha+RKt+ Dv+ +krq+ ++s FUN_000142-T1 40 RRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGLTHSV 100 3455567777777777888999*********************************988764 PP == domain 2 score: 30.2 bits; conditional E-value: 4.6e-10 CENP-T_C 23 asgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79 ++g +++s e +++ f+e v +D +y++Ha+RKt+ Dv+ +krq++ FUN_000142-T1 158 RRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 214 3455566777777777888999*********************************86 PP >> TAF TATA box binding protein associated factor (TAF) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.2 0.1 1.4e-07 0.00016 35 66 .] 61 92 .. 27 92 .. 0.78 2 ! 22.2 0.1 1.4e-07 0.00016 35 66 .] 179 210 .. 145 210 .. 0.78 Alignments for each domain: == domain 1 score: 22.2 bits; conditional E-value: 1.4e-07 HHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 35 yrlkeivqeaakfmrhskRrkLtvaDvdsALr 66 l +++++a+ +++h+kR++ t+ Dv +AL+ FUN_000142-T1 61 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92 55889*************************97 PP == domain 2 score: 22.2 bits; conditional E-value: 1.4e-07 HHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 35 yrlkeivqeaakfmrhskRrkLtvaDvdsALr 66 l +++++a+ +++h+kR++ t+ Dv +AL+ FUN_000142-T1 179 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 210 55889*************************97 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.1 4.5e-07 0.0005 87 121 .. 59 93 .. 20 94 .. 0.93 2 ! 20.7 0.0 4.6e-07 0.00051 87 121 .. 177 211 .. 145 212 .. 0.92 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 4.5e-07 HHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHHH CS Histone 87 veallvelfeeAnllakhaKRvTltpkDiqlAvrl 121 ++ +l+ + ++A +++haKR+T+t+ D+ A++ FUN_000142-T1 59 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 6789*************************999875 PP == domain 2 score: 20.7 bits; conditional E-value: 4.6e-07 HHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHHH CS Histone 87 veallvelfeeAnllakhaKRvTltpkDiqlAvrl 121 ++ +l+ + ++A +++haKR+T+t+ D+ A++ FUN_000142-T1 177 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 211 6789*************************999875 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.1 1.7e-06 0.002 42 73 .. 63 94 .. 36 117 .. 0.91 2 ! 19.0 0.0 1.7e-06 0.0019 42 73 .. 181 212 .. 154 215 .. 0.89 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 1.7e-06 CENP-S 42 lenlakDLeaFAkHAkRstittdDvlLlaRrn 73 len+ +D ++ +HAkR+t+t+ Dv+ ++r+ FUN_000142-T1 63 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 789999*******************9988875 PP == domain 2 score: 19.0 bits; conditional E-value: 1.7e-06 CENP-S 42 lenlakDLeaFAkHAkRstittdDvlLlaRrn 73 len+ +D ++ +HAkR+t+t+ Dv+ ++r+ FUN_000142-T1 181 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 212 789999*******************9998885 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.1 3.6e-06 0.004 32 65 .] 58 91 .. 32 91 .. 0.84 2 ! 17.8 0.1 3.6e-06 0.004 32 65 .] 176 209 .. 150 209 .. 0.84 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 3.6e-06 HHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 32 cveefieevaseAaeickkekrKTikaehiklAv 65 ++ f+e v + A+ +++++krKT++a ++ A+ FUN_000142-T1 58 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 5778*************************98876 PP == domain 2 score: 17.8 bits; conditional E-value: 3.6e-06 HHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 32 cveefieevaseAaeickkekrKTikaehiklAv 65 ++ f+e v + A+ +++++krKT++a ++ A+ FUN_000142-T1 176 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 209 5778*************************98876 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 9.6e-06 0.011 38 71 .. 62 95 .. 34 107 .. 0.82 2 ! 15.7 0.0 1.5e-05 0.016 38 70 .. 180 212 .. 152 218 .. 0.85 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 9.6e-06 HHHHHHHHHHHHHHHHTT---HHHHHHHHHHCCT CS TFIID-31kDa 38 YttevledAkvysehakkkkidlddvrlAiqsrv 71 + +v++dA +y ehak+k++++ dv A++ + FUN_000142-T1 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 6789*************************98764 PP == domain 2 score: 15.7 bits; conditional E-value: 1.5e-05 HHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 38 YttevledAkvysehakkkkidlddvrlAiqsr 70 + +v++dA +y ehak+k++++ dv A++ + FUN_000142-T1 180 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 212 6789************************99866 PP >> Bromo_TP Bromodomain associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.1 3.7e-05 0.041 34 73 .. 57 96 .. 52 102 .. 0.88 2 ! 12.3 0.0 0.00016 0.18 34 70 .. 175 211 .. 170 214 .. 0.90 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 3.7e-05 HHHHHHHHHHHHHHHHHHHHCCCCS--STTCCCCCHHCT- CS Bromo_TP 34 eiaqkYirelgeqaksfaehagRseptlkDvvltLqelgi 73 ++++ +++++ ++a + eha R ++t Dvv +L++ g+ FUN_000142-T1 57 GVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGL 96 56778999999*************************9887 PP == domain 2 score: 12.3 bits; conditional E-value: 0.00016 HHHHHHHHHHHHHHHHHHHHCCCCS--STTCCCCCHH CS Bromo_TP 34 eiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70 ++++ +++++ ++a + eha R ++t Dvv +L++ FUN_000142-T1 175 GVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 211 56778999999************************97 PP >> TFIID_20kDa Transcription initiation factor TFIID subunit A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.1 0.0 0.0022 2.5 33 65 .. 62 94 .. 57 95 .. 0.94 2 ! 9.1 0.0 0.0022 2.5 33 65 .. 180 212 .. 175 213 .. 0.94 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.0022 HHHHHHHHHHHHHHHTT-SCE-HHHHHHHHHHT CS TFIID_20kDa 33 FvesvtkkacklakhRksdklevrDiqlhlern 65 F e+v+ a+ h k +++ + D+ + l+r+ FUN_000142-T1 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 99*****************************96 PP == domain 2 score: 9.1 bits; conditional E-value: 0.0022 HHHHHHHHHHHHHHHTT-SCE-HHHHHHHHHHT CS TFIID_20kDa 33 FvesvtkkacklakhRksdklevrDiqlhlern 65 F e+v+ a+ h k +++ + D+ + l+r+ FUN_000142-T1 180 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 212 99*****************************96 PP >> TAFII28 hTAFII28-like protein conserved region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.1 0.0 0.0015 1.7 22 72 .. 30 80 .. 24 98 .. 0.86 2 ! 9.0 0.0 0.0017 1.9 22 72 .. 148 198 .. 142 211 .. 0.85 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.0015 TAFII28 22 lnkaaikklvnsvlgqsvsqnvaivvaglaKvFvgeiveeAlevqeewges 72 + k ai++l+ + + +s + +g+ KvF +++ A++ e+ + + FUN_000142-T1 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK 80 67889999999999999999999999****************999987655 PP == domain 2 score: 9.0 bits; conditional E-value: 0.0017 TAFII28 22 lnkaaikklvnsvlgqsvsqnvaivvaglaKvFvgeiveeAlevqeewges 72 + k ai++l+ + + +s + +g+ KvF +++ A++ e+ + + FUN_000142-T1 148 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK 198 67889999999999999999999999****************999987554 PP >> UPF0137 Uncharacterised protein family (UPF0137) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.1 0.1 0.0012 1.4 141 212 .. 23 94 .. 18 112 .. 0.87 2 ! 8.5 0.2 0.0019 2.2 141 212 .. 141 212 .. 136 217 .. 0.91 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.0012 UPF0137 141 lkaeveslPrqavYtLasRegslekkeeiienynGetktelleiirktfPlldtdrRqknlsekllellakl 212 l+ +++ + + a+ La R g + i e+ +G k l ++ir + +++ +R++ + ++ l++ FUN_000142-T1 23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 7889999**************9999999********************************999999999763 PP == domain 2 score: 8.5 bits; conditional E-value: 0.0019 UPF0137 141 lkaeveslPrqavYtLasRegslekkeeiienynGetktelleiirktfPlldtdrRqknlsekllellakl 212 l+ +++ + + a+ La R g + i e+ +G k l ++ir + +++ +R++ + ++ l++ FUN_000142-T1 141 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 212 7889999**************9999999********************************999999999876 PP >> LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.9 0.0 0.0076 8.6 31 62 .. 63 94 .. 62 95 .. 0.91 2 ! 7.3 0.0 0.0057 6.4 31 62 .. 181 212 .. 180 214 .. 0.90 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0076 LonB_AAA-LID 31 iadllrEAdywArkegaelveaehVekAleek 62 +++++r A ++ +++++++v+a +V Al+ + FUN_000142-T1 63 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 5789999*********************9865 PP == domain 2 score: 7.3 bits; conditional E-value: 0.0057 LonB_AAA-LID 31 iadllrEAdywArkegaelveaehVekAleek 62 +++++r A ++ +++++++v+a +V Al+ + FUN_000142-T1 181 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 212 578999**********************9876 PP >> E3_binding e3 binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 0.2 0.0049 5.5 4 16 .. 32 44 .. 30 49 .. 0.85 2 ! 7.7 0.2 0.0049 5.5 4 16 .. 150 162 .. 148 167 .. 0.85 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0049 -HHHHHHHHHCT- CS E3_binding 4 sPaaRklArelGi 16 Pa R+lAr G+ FUN_000142-T1 32 KPAIRRLARRGGV 44 6*********999 PP == domain 2 score: 7.7 bits; conditional E-value: 0.0049 -HHHHHHHHHCT- CS E3_binding 4 sPaaRklArelGi 16 Pa R+lAr G+ FUN_000142-T1 150 KPAIRRLARRGGV 162 6*********999 PP >> PrkA PrkA serine protein kinase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.2 0.0 0.0022 2.4 34 79 .. 55 100 .. 22 114 .. 0.80 2 ! 6.4 0.0 0.0079 8.8 34 72 .. 173 211 .. 142 216 .. 0.84 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.0022 PrkA 34 msGvspRfvikalsealskseakkekcinpldvlnalekglkehes 79 +Gv f+ +++ +a++ +e++k+k+++++dv++al++ h++ FUN_000142-T1 55 TRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGLTHSV 100 57888889999*******9******************987665554 PP == domain 2 score: 6.4 bits; conditional E-value: 0.0079 PrkA 34 msGvspRfvikalsealskseakkekcinpldvlnalek 72 +Gv f+ +++ +a++ +e++k+k+++++dv++al++ FUN_000142-T1 173 TRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 211 57888889999******99*****************987 PP >> HIGH_NTase1_ass Cytidyltransferase-related C-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 0.0 0.0038 4.2 67 110 .. 23 66 .. 9 104 .. 0.85 2 ! 7.2 0.1 0.0053 6 68 110 .. 142 184 .. 130 207 .. 0.87 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0038 HIGH_NTase1_ass 67 fverieGvsGtkireavyegklesvkkmlPeetldvlkeelend 110 + + i+G++ ir+ g ++++ ++ eet vlk +len FUN_000142-T1 23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENV 66 55789**********************************99984 PP == domain 2 score: 7.2 bits; conditional E-value: 0.0053 HIGH_NTase1_ass 68 verieGvsGtkireavyegklesvkkmlPeetldvlkeelend 110 + i+G++ ir+ g ++++ ++ eet vlk +len FUN_000142-T1 142 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENV 184 5679**********************************99984 PP >> CEP76_N CEP76 N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 0.0 0.0046 5.1 21 54 .. 65 98 .. 55 106 .. 0.84 2 ? 5.6 0.0 0.025 28 21 51 .. 183 213 .. 173 214 .. 0.85 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0046 CEP76_N 21 dvlsetvkeeegessrqlseedllkaLrerGivd 54 +v+ + v+ +e + +++ d+ aL+++G+ FUN_000142-T1 65 NVIRDAVTYTEHAKRKTVTAMDVVYALKRQGLTH 98 57777777777777899**************865 PP == domain 2 score: 5.6 bits; conditional E-value: 0.025 CEP76_N 21 dvlsetvkeeegessrqlseedllkaLrerG 51 +v+ + v+ +e + +++ d+ aL+++G FUN_000142-T1 183 NVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 213 57777777777777899*************9 PP >> Csa5_I-A Type-I-A Cascade subunit Csa5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 0.0 0.0091 10 26 66 .. 46 86 .. 35 111 .. 0.79 2 ? 5.8 0.0 0.017 19 26 66 .. 164 204 .. 153 212 .. 0.85 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0091 GTHHHHH---HHHHHHHHHHHHHHHHHHHHH-EEEEEEEE- CS Csa5_I-A 26 yidpliysldpkqikdvlsealreyvsylasaskrsvvlkd 66 i liy +k l + +r+ v+y+ a +++v+ d FUN_000142-T1 46 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMD 86 47889999999999*********************997554 PP == domain 2 score: 5.8 bits; conditional E-value: 0.017 GTHHHHH---HHHHHHHHHHHHHHHHHHHHH-EEEEEEEE- CS Csa5_I-A 26 yidpliysldpkqikdvlsealreyvsylasaskrsvvlkd 66 i liy +k l + +r+ v+y+ a +++v+ d FUN_000142-T1 164 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMD 204 47889999999999********************9998765 PP >> SAM_TNK SAM domain-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 0.1 0.013 15 41 51 .. 29 39 .. 26 41 .. 0.89 2 ? -2.3 0.0 5.7 6.4e+03 40 54 .. 127 141 .. 124 143 .. 0.80 3 ? 6.2 0.1 0.013 15 41 51 .. 147 157 .. 144 159 .. 0.89 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.013 SAM_TNK 41 GmskpeiRRLr 51 G++kp+iRRL FUN_000142-T1 29 GITKPAIRRLA 39 99*******96 PP == domain 2 score: -2.3 bits; conditional E-value: 5.7 SAM_TNK 40 iGmskpeiRRLrkal 54 G++k ++R rk l FUN_000142-T1 127 FGLGKGGAKRHRKIL 141 7999*9999988865 PP == domain 3 score: 6.2 bits; conditional E-value: 0.013 SAM_TNK 41 GmskpeiRRLr 51 G++kp+iRRL FUN_000142-T1 147 GITKPAIRRLA 157 99*******96 PP >> TFIID-18kDa Transcription initiation factor IID, 18kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 0.0 0.021 24 31 66 .. 58 93 .. 52 98 .. 0.90 2 ? 6.1 0.0 0.014 15 31 67 .. 176 212 .. 170 217 .. 0.88 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.021 HHHHHHHHHHHHHHHHHHHHT-SSBTHHHHHCCCTS CS TFIID-18kDa 31 lvrgyliellqqaakvaklrgsrkitlEDllfliRk 66 +++ +l +++ a+ +++ +++ +t D+++++++ FUN_000142-T1 58 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 56678999*************************987 PP == domain 2 score: 6.1 bits; conditional E-value: 0.014 HHHHHHHHHHHHHHHHHHHHT-SSBTHHHHHCCCTS- CS TFIID-18kDa 31 lvrgyliellqqaakvaklrgsrkitlEDllfliRkD 67 +++ +l +++ a+ +++ +++ +t D+++++++ FUN_000142-T1 176 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 212 56678999*************************9986 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.0 0.016 18 57 93 .. 39 76 .. 33 103 .. 0.86 2 ? 5.4 0.0 0.018 20 57 93 .. 157 194 .. 151 211 .. 0.86 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.016 HHHHEEEEE.EEEETTBCSEEEEEEEE-SSS-EEE-TT CS dUTPase 57 aakglivvg.gvidsdyrGevkvvlfnstkkditikkg 93 a++g++ g+i + +rG +kv l n ++ +t+++ FUN_000142-T1 39 ARRGGVKRIsGLIYEETRGVLKVFLENVIRDAVTYTEH 76 56666666669********************9999876 PP == domain 2 score: 5.4 bits; conditional E-value: 0.018 HHHHEEEEE.EEEETTBCSEEEEEEEE-SSS-EEE-TT CS dUTPase 57 aakglivvg.gvidsdyrGevkvvlfnstkkditikkg 93 a++g++ g+i + +rG +kv l n ++ +t+++ FUN_000142-T1 157 ARRGGVKRIsGLIYEETRGVLKVFLENVIRDAVTYTEH 194 56666666669********************9999875 PP >> pAdhesive_6 Putative adhesive domain (group 6) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 0.0 0.0051 5.8 99 159 .. 46 104 .. 12 108 .. 0.79 2 ? 3.8 0.0 0.044 49 99 142 .. 164 205 .. 128 216 .. 0.73 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0051 pAdhesive_6 99 tksGtlvYeiapgttsvaleltvkldltfllnnasrsfndaieVqssksenGaetiideek 159 sG l+Ye + g+ +v le ++ +t+ +++a+r+++ a++V + + +G ++ +++ + FUN_000142-T1 46 RISG-LIYEETRGVLKVFLENVIRDAVTY-TEHAKRKTVTAMDVVYALKRQGLTHSVNNHV 104 3333.99**********************.8888888888999988888899999888766 PP == domain 2 score: 3.8 bits; conditional E-value: 0.044 pAdhesive_6 99 tksGtlvYeiapgttsvaleltvkldltfllnnasrsfndaieV 142 sG l+Ye + g+ +v le ++ +t+ +++a+r+++ a++V FUN_000142-T1 164 RISG-LIYEETRGVLKVFLENVIRDAVTY-TEHAKRKTVTAMDV 205 3333.99**********************.55566655555555 PP >> Flavi_DEAD Flavivirus DEAD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 0.2 0.0036 4 15 91 .. 28 104 .. 16 113 .. 0.88 2 ? 5.3 0.2 0.022 25 15 75 .. 146 206 .. 134 213 .. 0.89 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0036 S-TTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS-EEE-------------SEEEEEHHHHHHHHHHT- CS Flavi_DEAD 15 aGktrkvlpelvkeaierrlrtlvLaPtrvvlaemeealkglevryktsavkeektgreivdvmchatftkrllspv 91 +G t+ + +l ++ +r+ l+ tr vl+ e + v y+++a +++ t ++v ++ +t+ + ++v FUN_000142-T1 28 QGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGLTHSVNNHV 104 588999999999***************************************99999999999988888887766555 PP == domain 2 score: 5.3 bits; conditional E-value: 0.022 S-TTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS-EEE-------------SE CS Flavi_DEAD 15 aGktrkvlpelvkeaierrlrtlvLaPtrvvlaemeealkglevryktsavkeektgreiv 75 +G t+ + +l ++ +r+ l+ tr vl+ e + v y+++a +++ t ++v FUN_000142-T1 146 QGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVV 206 588999999999*************************99999*******999888888877 PP >> TARBP1 TARBP1 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 0.0 0.01 11 38 82 .. 61 104 .. 55 117 .. 0.77 2 ? 3.3 0.0 0.052 59 38 70 .. 179 211 .. 173 214 .. 0.91 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.01 TARBP1 38 etlkaalyealtadkdagkranmqlrveyLlkrivaltkeqelke 82 l++ + +a+t ++a +++ + v y lkr lt++ + + FUN_000142-T1 61 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ-GLTHSVNNHV 104 5688999**************************5.5666555443 PP == domain 2 score: 3.3 bits; conditional E-value: 0.052 TARBP1 38 etlkaalyealtadkdagkranmqlrveyLlkr 70 l++ + +a+t ++a +++ + v y lkr FUN_000142-T1 179 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 211 5688999*************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (221 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 405 (0.0163729); expected 494.7 (0.02) Passed bias filter: 341 (0.0137856); expected 494.7 (0.02) Passed Vit filter: 54 (0.00218305); expected 24.7 (0.001) Passed Fwd filter: 23 (0.000929819); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 22 [number of targets reported over threshold] # CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.35 # Mc/sec: 2459.66 // Query: FUN_000143-T1 [L=164] Description: FUN_000143 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000143-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000143-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000143-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000143-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.34 # Mc/sec: 1873.67 // Query: FUN_000144-T1 [L=129] Description: FUN_000144 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000144-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000144-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000144-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.34 # Mc/sec: 1476.38 // Query: FUN_000145-T1 [L=139] Description: FUN_000145 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000145-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000145-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000145-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000145-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000145-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000145-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000145-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000145-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000145-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000145-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.34 # Mc/sec: 1603.16 // Query: FUN_000146-T1 [L=139] Description: FUN_000146 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-48 165.0 1.0 1.2e-48 164.8 1.0 1.0 1 Histone Core histone H2A/H2B/H3/H4 6.8e-05 23.4 0.5 0.00011 22.7 0.1 1.6 2 CENP-T_C Centromere kinetochore component CENP-T his 0.00028 22.1 0.7 0.00033 21.9 0.7 1.1 1 PAF PCNA-associated factor histone like domain 0.00086 20.1 0.0 0.0013 19.5 0.0 1.3 1 CENP-S CENP-S protein 0.007 17.1 0.0 0.017 15.9 0.0 1.6 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y ------ inclusion threshold ------ 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 TFIID-31kDa Transcription initiation factor IID, 31kD s Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.8 1.0 3.5e-52 1.2e-48 2 122 .] 10 135 .. 9 135 .. 0.97 Alignments for each domain: == domain 1 score: 164.8 bits; conditional E-value: 3.5e-52 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+lv FUN_000146-T1 10 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLV 105 68999************9999998899999****************************************************************** PP HHHHHHHHHHHHCT-SEE-HHHHHHHHHHH CS Histone 93 elfeeAnllakhaKRvTltpkDiqlAvrlr 122 lfe++nl+a+haKRvT++pkDiqlA+r+r FUN_000146-T1 106 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 135 ****************************97 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 2.1 7.4e+03 14 20 .. 22 28 .. 4 40 .. 0.61 2 ! 22.7 0.1 3.1e-08 0.00011 14 76 .. 72 133 .. 59 137 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.1 CENP-T_C 14 krlakrf 20 k+la+++ FUN_000146-T1 22 KQLATKA 28 3333333 PP == domain 2 score: 22.7 bits; conditional E-value: 3.1e-08 CENP-T_C 14 krlakrfakasgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkr 76 +rl++++a+ + + + +a+ al++as+ ++ + eD + a Ha+R ti ++D+ L +r FUN_000146-T1 72 QRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ-LARR 133 566666666667889*****************************************86.4454 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.7 9.2e-08 0.00033 1 62 [. 4 61 .. 4 91 .. 0.90 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.2e-08 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKg 62 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK FUN_000146-T1 4 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKS 61 99***998...9***************999999999988999999998.6999999999997 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.0013 14 71 .. 74 133 .. 68 136 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 CENP-S 14 iveeeal..eekvevtpqfiaaltelvykqlenlakDLeaFAkHAkRstittdDvlLlaR 71 +v+e+a+ ++++ + ++++ al e + l l +D ++ A HAkR ti ++D+ L R FUN_000146-T1 74 LVREIAQdfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 444433312666789999*************************************99876 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.7e-06 0.017 2 64 .. 68 131 .. 67 131 .. 0.93 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.7e-06 XXXHHHHHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklA 64 +LP r r + +d + + ++ ++A ++e+ e ++ + + ++ + ++kr Ti++++i+lA FUN_000146-T1 68 KLPFQRLVREIAQDfKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131 789898888888888999*******************************************998 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.4e-05 0.049 35 77 .] 54 96 .. 51 96 .. 0.93 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000146-T1 54 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 96 66678899999******************************98 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 1.7 5.9e+03 72 90 .. 12 30 .. 3 36 .. 0.63 2 ? 12.9 0.0 3.3e-05 0.12 22 68 .. 87 133 .. 72 138 .. 0.87 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.7 TTSSS-CSTHHHHHHHHHH CS TFIID-31kDa 72 eksfteppprelLlelAre 90 +ks ++ pr+ L++ A++ FUN_000146-T1 12 RKSTGGKAPRKQLATKAAR 30 4455566777777666654 PP == domain 2 score: 12.9 bits; conditional E-value: 3.3e-05 ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHH CS TFIID-31kDa 22 eyeprVvlqLlefayrYttevledAkvysehakkkkidlddvrlAiq 68 ++ + vl L e Y + + ed ++++ hak+ +i +d++lA FUN_000146-T1 87 RFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 133 578889999***********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (139 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 530 (0.0214263); expected 494.7 (0.02) Passed bias filter: 405 (0.0163729); expected 494.7 (0.02) Passed Vit filter: 32 (0.00129366); expected 24.7 (0.001) Passed Fwd filter: 7 (0.000282988); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35 # Mc/sec: 1565.67 // Query: FUN_000147-T1 [L=129] Description: FUN_000147 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000147-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000147-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000147-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.31 # Mc/sec: 1603.13 // Query: FUN_000148-T1 [L=129] Description: FUN_000148 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000148-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000148-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000148-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.34 # Mc/sec: 1477.51 // Query: FUN_000149-T1 [L=208] Description: FUN_000149 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-27 94.5 2.9 1.5e-20 74.1 0.6 2.2 2 Histone Core histone H2A/H2B/H3/H4 4.5e-09 36.9 0.7 0.0036 18.0 0.1 2.5 2 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a 1.3e-08 35.3 0.1 4.5e-07 30.4 0.0 2.2 2 CENP-T_C Centromere kinetochore component CENP-T histon 2.6e-05 24.8 0.3 0.00014 22.4 0.1 2.2 2 TAF TATA box binding protein associated factor (TA 0.0002 22.3 0.0 0.91 10.5 0.0 2.3 2 TFIID_20kDa Transcription initiation factor TFIID subunit 0.00028 21.4 0.0 0.015 15.8 0.0 2.2 2 TFIID-31kDa Transcription initiation factor IID, 31kD subu 0.00042 21.1 0.1 0.0017 19.2 0.0 1.9 2 CENP-S CENP-S protein ------ inclusion threshold ------ 0.011 16.2 0.2 5.8 7.5 0.0 2.6 2 LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain 0.023 15.1 0.1 0.045 14.2 0.1 1.4 1 ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat 0.066 13.7 0.0 0.16 12.4 0.0 1.6 1 Bromo_TP Bromodomain associated 0.11 12.9 0.1 0.17 12.3 0.1 1.3 1 YscO-like YscO-like protein Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.1 0.6 6.7e-24 1.5e-20 24 121 .. 7 100 .. 2 101 .. 0.95 2 ! 20.9 0.1 2e-07 0.00045 87 121 .. 164 198 .. 124 199 .. 0.93 Alignments for each domain: == domain 1 score: 74.1 bits; conditional E-value: 6.7e-24 SSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHH CS Histone 24 skkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAv 119 +kk ++r + ++ e k+++ ++++++++++++v+++v++ d +is++a+ +++++v++++++++ e+++l+ ++K+ T+ +++iq+A+ FUN_000149-T1 7 AAKKGEKRVGKAKSGTAETAKRRRGKRKESYAIYIYKVLKQVHP----DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 98 5678889999999999****************************....************************************************ PP HH CS Histone 120 rl 121 rl FUN_000149-T1 99 RL 100 *8 PP == domain 2 score: 20.9 bits; conditional E-value: 2e-07 HHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHHH CS Histone 87 veallvelfeeAnllakhaKRvTltpkDiqlAvrl 121 ++ +l+ + ++A +++haKR+T+t+ D+ A++ FUN_000149-T1 164 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 198 6789*************************999875 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 3.3e-06 0.0074 8 65 .] 41 98 .. 40 98 .. 0.95 2 ! 18.0 0.1 1.6e-06 0.0036 32 65 .] 163 196 .. 137 196 .. 0.84 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 3.3e-06 HHHHHHCC.TT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 8 vkrImksd.pdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 + +++k+ pd++ is+ A +++ +v + e++a e++++ k+ Ti++ i+ A+ FUN_000149-T1 41 IYKVLKQVhPDTG-ISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAI 98 6799****88888.*****************************************9996 PP == domain 2 score: 18.0 bits; conditional E-value: 1.6e-06 HHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 32 cveefieevaseAaeickkekrKTikaehiklAv 65 ++ f+e v + A+ +++++krKT++a ++ A+ FUN_000149-T1 163 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 196 5778*************************98876 PP >> CENP-T_C Centromere kinetochore component CENP-T histone fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.076 1.7e+02 27 72 .. 51 96 .. 38 102 .. 0.82 2 ! 30.4 0.0 2e-10 4.5e-07 23 79 .. 145 201 .. 126 204 .. 0.81 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.076 CENP-T_C 27 kaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvil 72 + +s +a+ + + ++ fe+++ + +++ ++ ti ++++ + FUN_000149-T1 51 DTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 96 5678999****************99988888888888888777665 PP == domain 2 score: 30.4 bits; conditional E-value: 2e-10 CENP-T_C 23 asgskaklskealealeqasdeffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79 ++g +++s e +++ f+e v +D +y++Ha+RKt+ Dv+ +krq++ FUN_000149-T1 145 RRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 201 3455567777777777888999*********************************86 PP >> TAF TATA box binding protein associated factor (TAF) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.0 0.0 0.62 1.4e+03 38 66 .] 71 99 .. 52 99 .. 0.80 2 ! 22.4 0.1 6.4e-08 0.00014 34 66 .] 165 197 .. 132 197 .. 0.78 Alignments for each domain: == domain 1 score: -0.0 bits; conditional E-value: 0.62 HHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 38 keivqeaakfmrhskRrkLtvaDvdsALr 66 +i+ e+++ k +++++ ++ A+r FUN_000149-T1 71 ERIAVESSRLSLYNKKATISSREIQTAIR 99 56778888888888999999999999998 PP == domain 2 score: 22.4 bits; conditional E-value: 6.4e-08 HHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS TAF 34 eyrlkeivqeaakfmrhskRrkLtvaDvdsALr 66 + l +++++a+ +++h+kR++ t+ Dv +AL+ FUN_000149-T1 165 KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 197 555889*************************97 PP >> TFIID_20kDa Transcription initiation factor TFIID subunit A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.5 0.0 0.0004 0.91 7 60 .. 43 96 .. 40 100 .. 0.93 2 ! 9.3 0.0 0.001 2.3 33 65 .. 167 199 .. 162 200 .. 0.94 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.0004 HHHHHHSSSEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCE-HHHHHH CS TFIID_20kDa 7 dLvqqidseekLdedvedlLleiaddFvesvtkkacklakhRksdklevrDiql 60 ++q+ +++ + + ++ ++d e + ++++l + k ++++r iq FUN_000149-T1 43 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQT 96 5789************************************************95 PP == domain 2 score: 9.3 bits; conditional E-value: 0.001 HHHHHHHHHHHHHHHTT-SCE-HHHHHHHHHHT CS TFIID_20kDa 33 FvesvtkkacklakhRksdklevrDiqlhlern 65 F e+v+ a+ h k +++ + D+ + l+r+ FUN_000149-T1 167 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 199 99*****************************96 PP >> TFIID-31kDa Transcription initiation factor IID, 31kD subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.0 0.041 91 40 71 .. 71 102 .. 42 110 .. 0.79 2 ! 15.8 0.0 6.6e-06 0.015 38 70 .. 167 199 .. 139 205 .. 0.85 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.041 HHHHHHHHHHHHHHTT---HHHHHHHHHHCCT CS TFIID-31kDa 40 tevledAkvysehakkkkidlddvrlAiqsrv 71 + +++ +s ++kk++i+ ++++Ai + FUN_000149-T1 71 ERIAVESSRLSLYNKKATISSREIQTAIRLLL 102 55667899999999**************8765 PP == domain 2 score: 15.8 bits; conditional E-value: 6.6e-06 HHHHHHHHHHHHHHHHTT---HHHHHHHHHHCC CS TFIID-31kDa 38 YttevledAkvysehakkkkidlddvrlAiqsr 70 + +v++dA +y ehak+k++++ dv A++ + FUN_000149-T1 167 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 199 6789************************99866 PP >> CENP-S CENP-S protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 1.4 3.2e+03 30 50 .. 61 81 .. 38 97 .. 0.50 2 ! 19.2 0.0 7.5e-07 0.0017 42 73 .. 168 199 .. 139 202 .. 0.89 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 1.4 CENP-S 30 fiaaltelvykqlenlakDLe 50 ++++ ++ ++++++ ++ L FUN_000149-T1 61 IMNSFVNDIFERIAVESSRLS 81 223333334444444444444 PP == domain 2 score: 19.2 bits; conditional E-value: 7.5e-07 CENP-S 42 lenlakDLeaFAkHAkRstittdDvlLlaRrn 73 len+ +D ++ +HAkR+t+t+ Dv+ ++r+ FUN_000149-T1 168 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 199 789999*******************9998885 PP >> LonB_AAA-LID Archaeal LonB, AAA+ ATPase LID domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 0.0 0.0073 16 33 60 .. 72 99 .. 66 100 .. 0.88 2 ? 7.5 0.0 0.0026 5.8 31 62 .. 168 199 .. 167 201 .. 0.91 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0073 LonB_AAA-LID 33 dllrEAdywArkegaelveaehVekAle 60 + +E++ ++ +++++++++++++A++ FUN_000149-T1 72 RIAVESSRLSLYNKKATISSREIQTAIR 99 4678**********************96 PP == domain 2 score: 7.5 bits; conditional E-value: 0.0026 LonB_AAA-LID 31 iadllrEAdywArkegaelveaehVekAleek 62 +++++r A ++ +++++++v+a +V Al+ + FUN_000149-T1 168 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 199 578999**********************9876 PP >> ARM_TT21 Tetratricopeptide repeat protein 21 ARM repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.1 2e-05 0.045 42 117 .. 24 101 .. 5 106 .. 0.79 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2e-05 ARM_TT21 42 skekkkekessesdkvsvylelidvlsklkkveeAkkllqeaiqe.fkg.tpeesrillanaelalargdvdkAlelL 117 +++k+++ + +es + +y l +v+ +++ +++A+ ++++ +++ f+ e sr+ l n + +++ ++++A++lL FUN_000149-T1 24 ETAKRRRGKRKESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDiFERiAVESSRLSLYNKKATISSREIQTAIRLL 101 233333445566778899999*******************98765266656788**********************98 PP >> Bromo_TP Bromodomain associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 7.2e-05 0.16 34 70 .. 162 198 .. 157 201 .. 0.90 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 7.2e-05 HHHHHHHHHHHHHHHHHHHHCCCCS--STTCCCCCHH CS Bromo_TP 34 eiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70 ++++ +++++ ++a + eha R ++t Dvv +L++ FUN_000149-T1 162 GVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 198 56778999999************************97 PP >> YscO-like YscO-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.1 7.6e-05 0.17 38 113 .. 23 100 .. 1 106 [. 0.71 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 7.6e-05 HHHHHHHHHHHHHHHHHHHHH.HHH.HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS YscO-like 38 lakleaerdkvlkhkkaKlqq.lrd.eldkGttsdkikkmkeyikvvkeelkqeekkvedqkekVevAkkklEearee 113 + + r k+++ + + + l++ + d G +s+++ +m+++++ + e++++e ++ ++k ++ ++++ a FUN_000149-T1 23 AETAKRRRGKRKESYAIYIYKvLKQvHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRL 100 233344455566666666666455424599*****************************************9988655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (208 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 953 (0.0385268); expected 494.7 (0.02) Passed bias filter: 694 (0.0280563); expected 494.7 (0.02) Passed Vit filter: 60 (0.00242561); expected 24.7 (0.001) Passed Fwd filter: 11 (0.000444696); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39 # Mc/sec: 2115.18 // Query: FUN_000150-T1 [L=125] Description: FUN_000150 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (125 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 504 (0.0203752); expected 494.7 (0.02) Passed bias filter: 395 (0.0159686); expected 494.7 (0.02) Passed Vit filter: 27 (0.00109153); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.33 # Mc/sec: 1477.30 // Query: FUN_000151-T1 [L=164] Description: FUN_000151 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000151-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000151-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000151-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000151-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.34 # Mc/sec: 1863.28 // Query: FUN_000152-T1 [L=129] Description: FUN_000152 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000152-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000152-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000152-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.33 # Mc/sec: 1551.78 // Query: FUN_000153-T1 [L=164] Description: FUN_000153 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000153-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000153-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000153-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000153-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.32 # Mc/sec: 2021.56 // Query: FUN_000154-T1 [L=129] Description: FUN_000154 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000154-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000154-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000154-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 1519.92 // Query: FUN_000155-T1 [L=164] Description: FUN_000155 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000155-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000155-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000155-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000155-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.33 # Mc/sec: 1935.04 // Query: FUN_000156-T1 [L=129] Description: FUN_000156 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000156-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000156-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000156-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.33 # Mc/sec: 1548.67 // Query: FUN_000157-T1 [L=164] Description: FUN_000157 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000157-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000157-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000157-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000157-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.36 # Mc/sec: 1809.01 // Query: FUN_000158-T1 [L=129] Description: FUN_000158 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000158-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000158-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000158-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.32 # Mc/sec: 1590.29 // Query: FUN_000159-T1 [L=164] Description: FUN_000159 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000159-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000159-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000159-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000159-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.32 # Mc/sec: 2011.88 // Query: FUN_000160-T1 [L=129] Description: FUN_000160 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000160-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000160-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000160-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.35 # Mc/sec: 1464.44 // Query: FUN_000161-T1 [L=164] Description: FUN_000161 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000161-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000161-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000161-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000161-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.35 # Mc/sec: 1818.91 // Query: FUN_000162-T1 [L=129] Description: FUN_000162 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000162-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000162-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000162-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.32 # Mc/sec: 1557.39 // Query: FUN_000163-T1 [L=164] Description: FUN_000163 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000163-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000163-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000163-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000163-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.35 # Mc/sec: 1813.72 // Query: FUN_000164-T1 [L=129] Description: FUN_000164 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000164-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000164-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000164-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 1520.43 // Query: FUN_000165-T1 [L=164] Description: FUN_000165 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000165-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000165-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000165-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000165-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.35 # Mc/sec: 1822.70 // Query: FUN_000166-T1 [L=129] Description: FUN_000166 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000166-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000166-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000166-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.35 # Mc/sec: 1437.48 // Query: FUN_000167-T1 [L=164] Description: FUN_000167 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000167-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000167-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000167-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000167-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.33 # Mc/sec: 1969.04 // Query: FUN_000168-T1 [L=129] Description: FUN_000168 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000168-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000168-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000168-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.34 # Mc/sec: 1503.15 // Query: FUN_000169-T1 [L=164] Description: FUN_000169 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000169-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000169-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000169-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000169-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.34 # Mc/sec: 1887.06 // Query: FUN_000170-T1 [L=129] Description: FUN_000170 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000170-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000170-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000170-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.32 # Mc/sec: 1564.04 // Query: FUN_000171-T1 [L=164] Description: FUN_000171 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000171-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000171-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000171-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000171-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 1974.79 // Query: FUN_000172-T1 [L=129] Description: FUN_000172 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000172-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000172-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000172-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.32 # Mc/sec: 1557.82 // Query: FUN_000173-T1 [L=164] Description: FUN_000173 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000173-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000173-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000173-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000173-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.34 # Mc/sec: 1891.15 // Query: FUN_000174-T1 [L=129] Description: FUN_000174 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000174-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000174-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000174-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.34 # Mc/sec: 1501.97 // Query: FUN_000175-T1 [L=164] Description: FUN_000175 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000175-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000175-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000175-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000175-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 1966.23 // Query: FUN_000176-T1 [L=129] Description: FUN_000176 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000176-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000176-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000176-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.33 # Mc/sec: 1534.21 // Query: FUN_000177-T1 [L=164] Description: FUN_000177 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000177-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000177-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000177-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000177-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.34 # Mc/sec: 1887.29 // Query: FUN_000178-T1 [L=129] Description: FUN_000178 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000178-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000178-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000178-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 1531.11 // Query: FUN_000179-T1 [L=164] Description: FUN_000179 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 101.3 1.0 8.8e-29 100.7 1.0 1.3 1 Histone Core histone H2A/H2B/H3/H4 0.00089 20.4 3.1 0.0011 20.1 3.1 1.4 1 PAF PCNA-associated factor histone like domain ------ inclusion threshold ------ 0.041 14.2 0.0 0.07 13.5 0.0 1.3 1 YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransfera Domain annotation for each model (and alignments): >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.7 1.0 1.1e-32 8.8e-29 2 93 .. 7 103 .. 6 107 .. 0.96 Alignments for each domain: == domain 1 score: 100.7 bits; conditional E-value: 1.1e-32 GECXSS.EE................SBSSB..TS...TTHHHHHHHHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHH CS Histone 2 kakkerekkapekkvsqks.....sskskkkkkrrarpgtkalkeirkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallv 92 +a+k++++kap+k+ ++k +++ kk++r+rpgt+al+eir+yqkst+lli+klpf+R+vre+ q++k+dlr++++av+alqea+ea+l+ FUN_000179-T1 7 TARKSTGGKAPRKQLATKAarksaPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLE 102 68999************9999998899999*****************************************************************9 PP H CS Histone 93 e 93 e FUN_000179-T1 103 E 103 8 PP >> PAF PCNA-associated factor histone like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 3.1 1.3e-07 0.0011 1 67 [. 1 63 [. 1 152 [. 0.78 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.3e-07 PAF 1 MvrTkAdvsaarkavaakAprkslgasssssstssssskkkkkkyaggNpvcprptPaWQKgIteFf 67 M+rTk ++ rk ++kAprk+l+++ + +s ++ kk + y +g v r++ QK + FUN_000179-T1 1 MARTKQTA---RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG-TVALREIRRYQKSTELLI 63 99***998...9***************999999999988999999998.6999***99999866555 PP >> YebU_pre-PUA_dom Ribosomal RNA small subunit methyltransferase F, pre-PUA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 8.5e-06 0.07 35 77 .] 51 93 .. 49 93 .. 0.93 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.5e-06 YebU_pre-PUA_dom 35 eiWLfpaaiepllgkvrfsRiGlklaetfkkGyrWqheaviaL 77 ei + +++e l+ k+ f+R+ +a fk r+q av+aL FUN_000179-T1 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLAL 93 66678889999******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (164 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 963 (0.0389311); expected 494.7 (0.02) Passed bias filter: 690 (0.0278946); expected 494.7 (0.02) Passed Vit filter: 47 (0.00190006); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.36 # Mc/sec: 1807.85 // Query: FUN_000180-T1 [L=129] Description: FUN_000180 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-21 74.1 1.7 1.4e-20 73.2 1.7 1.5 1 Histone_H2A_C C-terminus of histone H2A 2.7e-15 57.2 0.0 3.4e-15 56.8 0.0 1.1 1 Histone Core histone H2A/H2B/H3/H4 2e-05 25.2 0.0 2.8e-05 24.7 0.0 1.2 1 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) a Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 1.7 1.7e-24 1.4e-20 1 34 [. 95 128 .. 95 129 .] 0.97 Alignments for each domain: == domain 1 score: 73.2 bits; conditional E-value: 1.7e-24 CCHHHHCCTHCCCCT--SSXXXXXXXXXXXXXXX CS Histone_H2A_C 1 EELnkLLggVTIAqGGVLPnIhkaLLpkktkkkk 34 EELnkLL gVTIAqGGVLPnI+++LLpkkt+kk+ FUN_000180-T1 95 EELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 128 9*******************************96 PP >> Histone Core histone H2A/H2B/H3/H4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 4.2e-19 3.4e-15 42 120 .. 15 92 .. 8 94 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 4.2e-19 HHHHHHSXSXSSSHHHHHHHHHHCCSTTTSS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SEE-HHHHHHHHH CS Histone 42 irkyqkstdlliqklpfaRvvrevvqstkedlrisaeavvalqeaveallvelfeeAnllakhaKRvTltpkDiqlAvr 120 +k+ +++ + + ++p+ R++r +++ r+ a a+v++++ +e+l e++e A ++a+++K++++ p+++qlAvr FUN_000180-T1 15 GTKSKSRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVR 92 578999999****************8.88999**********************************************9 PP >> CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.4e-09 2.8e-05 2 65 .] 28 91 .. 27 91 .. 0.98 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.4e-09 XXXHHHHHHHHHCCTT-S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS CBFD_NFYB_HMF 2 eLPiarvkrImksdpdarkiskdAkeliaecveefieevaseAaeickkekrKTikaehiklAv 65 ++P +r+ r++++ + a+++ A++++a ++e e+++ A ++ k+ i + h++lAv FUN_000180-T1 28 QFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAV 91 69************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 532 (0.0215071); expected 494.7 (0.02) Passed bias filter: 442 (0.0178687); expected 494.7 (0.02) Passed Vit filter: 34 (0.00137451); expected 24.7 (0.001) Passed Fwd filter: 3 (0.000121281); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.32 # Mc/sec: 1568.72 // Query: FUN_000181-T1 [L=116] Description: FUN_000181 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (116 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 453 (0.0183134); expected 494.7 (0.02) Passed bias filter: 376 (0.0152005); expected 494.7 (0.02) Passed Vit filter: 25 (0.00101067); expected 24.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.33 # Mc/sec: 1394.85 // Query: FUN_000182-T1 [L=126] Description: FUN_000182 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-11 44.9 0.1 1.8e-11 44.5 0.1 1.2 1 zf-AD Zinc-finger associated domain (zf-AD) ------ inclusion threshold ------ 0.06 13.9 0.8 0.2 12.2 0.8 1.8 1 FYVE FYVE zinc finger Domain annotation for each model (and alignments): >> zf-AD Zinc-finger associated domain (zf-AD) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.5 0.1 1.5e-15 1.8e-11 1 73 [. 22 97 .. 22 99 .. 0.95 Alignments for each domain: == domain 1 score: 44.5 bits; conditional E-value: 1.5e-15 zf-AD 1 vCRlCl...deeaellpifepsesektlaelleellgielspkdllpkkiCerCleklqefysFrkrclesqallq 73 vCR+C ++++l++f+++++++ ++++le+++g+++++ d+lp+ C++C+ k++++ F k++ es a+ + FUN_000182-T1 22 VCRTCNnnvILKSHPLDLFGDKAKDERIVADLEKMFGLKITRGDGLPSRTCRSCYVKISKIQAFVKMIFESKAQQE 97 7*****8888899*********9999*********************************************99865 PP >> FYVE FYVE zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.8 1.6e-05 0.2 20 66 .. 16 80 .. 7 81 .. 0.65 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 1.6e-05 SSS--EE-TTT--EE-STTS..................-EEE.EEGGGTEEEEEEE-HHHHHHHH CS FYVE 20 llrrrhHCrkCGkvfCskCs..................skkislleelkeekpvrvCdeCykkle 66 + +r+ Cr C + + k +k + l+ + ++ p r+C++Cy k++ FUN_000182-T1 16 FSSRKDVCRTCNNNVILKSHpldlfgdkakderivadlEKMFGLKITRGDGLPSRTCRSCYVKIS 80 567889999998877733333555555544444444444444444788899999*******9886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (126 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 958 (0.038729); expected 494.7 (0.02) Passed bias filter: 685 (0.0276924); expected 494.7 (0.02) Passed Vit filter: 43 (0.00173836); expected 24.7 (0.001) Passed Fwd filter: 2 (8.08538e-05); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.32 # Mc/sec: 1528.61 // Query: FUN_000183-T1 [L=180] Description: FUN_000183 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-06 28.9 0.2 2e-06 28.9 0.2 2.2 2 THAP THAP domain 0.0069 16.6 1.1 0.0069 16.6 1.1 1.5 2 DivIC Septum formation initiator ------ inclusion threshold ------ 0.012 16.4 0.8 0.036 14.8 0.8 1.8 1 Mto2_bdg Micro-tubular organiser Mto1 C-term Mto2-bindi 0.014 15.0 0.7 0.015 14.9 0.7 1.1 1 Tmemb_cc2 Predicted transmembrane and coiled-coil 2 prot 0.031 14.8 1.3 0.037 14.6 0.3 1.5 2 TolA_bind_tri TolA binding protein trimerisation 0.05 14.1 4.0 0.073 13.6 4.0 1.3 1 UPF0242 Uncharacterised protein family (UPF0242) N-ter 0.13 11.8 0.5 0.18 11.3 0.5 1.2 1 Seadorna_VP6 Seadornavirus VP6 protein 0.23 12.0 0.8 0.64 10.5 0.5 1.8 2 DUF2443 Protein of unknown function (DUF2443) Domain annotation for each model (and alignments): >> THAP THAP domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.9 0.2 6.6e-10 2e-06 28 87 .] 4 57 .. 2 57 .. 0.87 2 ? -2.3 3.4 3.6 1.1e+04 26 61 .. 91 122 .. 58 155 .. 0.47 Alignments for each domain: == domain 1 score: 28.9 bits; conditional E-value: 6.6e-10 THAP 28 errkkWlknikredlekkkkkknsrvCskHFeeelekeedeekrskkrrrLkpdavPtlf 87 ++r+kW k+++r d+ +++ +n r+C +HF k +d++++ ++r +++ P++f FUN_000183-T1 4 ALRRKWRKFCRRADKGFETQ-ENPRICAAHF-----KISDFKQSLNGRIDVRKGTSPSIF 57 5799*********9999888.456*******.....56788899999999********98 PP == domain 2 score: -2.3 bits; conditional E-value: 3.6 THAP 26 dkerrkkWlknikredlekkkkkknsrvCskHFeee 61 +++r+ + ++ e +++ + + +k F+++ FUN_000183-T1 91 KEARITQLKSAVAAEAVKHD----HDYCSHKDFHDK 122 33344444333333322221....234455555443 PP >> DivIC Septum formation initiator # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.0 5.6 1.7e+04 45 51 .. 93 99 .. 92 106 .. 0.46 2 ! 16.6 1.1 2.2e-06 0.0069 11 49 .. 119 157 .. 118 163 .. 0.92 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 5.6 HHHHHHT CS DivIC 45 aeikdLk 51 a+i +Lk FUN_000183-T1 93 ARITQLK 99 4444443 PP == domain 2 score: 16.6 bits; conditional E-value: 2.2e-06 SSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS DivIC 11 fgkngllaykqlkqeiaeleaeiaklkaeneeLeaeikd 49 f++++ ++ ++l qe++ +++++++lk+en++L+a+++d FUN_000183-T1 119 FHDKSTQTNFDLPQELQGIKEDLQRLKEENDKLKAKLDD 157 57789999***************************9886 PP >> Mto2_bdg Micro-tubular organiser Mto1 C-term Mto2-binding region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 0.8 1.2e-05 0.036 25 46 .. 135 156 .. 131 162 .. 0.91 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 1.2e-05 Mto2_bdg 25 sgarerLeelkaeNrlLkaeLe 46 +g++e L+ lk+eN +Lka+L FUN_000183-T1 135 QGIKEDLQRLKEENDKLKAKLD 156 69******************96 PP >> Tmemb_cc2 Predicted transmembrane and coiled-coil 2 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 0.7 4.9e-06 0.015 177 249 .. 87 158 .. 22 179 .. 0.57 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 4.9e-06 Tmemb_cc2 177 yksddevssssvesssadsnsnkeesaaenekeaesesqekleaileelqelkeeqaqleekleelkeqlkke 249 y+ e++ ++ +s++a ++ +++++ + +k + +s+++ + +elq +ke+ ++l+e+ ++lk++l+ + FUN_000183-T1 87 YQPLKEARITQLKSAVAAEAVKHDHDYCS-HKDFHDKSTQTNFDLPQELQGIKEDLQRLKEENDKLKAKLDDK 158 22222333333335555444444444443.3344444444444566777777777777777777777766543 PP >> TolA_bind_tri TolA binding protein trimerisation # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 0.0 5.3 1.6e+04 4 12 .. 93 101 .. 92 105 .. 0.47 2 ? 14.6 0.3 1.2e-05 0.037 16 59 .. 123 166 .. 119 168 .. 0.91 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 5.3 TolA_bind_tri 4 dRlarLEri 12 +R+++L FUN_000183-T1 93 ARITQLKSA 101 455554433 PP == domain 2 score: 14.6 bits; conditional E-value: 1.2e-05 TolA_bind_tri 16 rnqallelqqqldqLqqevaeLRGqlEelqyeleqlkeRqrdlY 59 ++q++++l q+l+ +++++++L+ ++++l+ +l++ ++ r+l+ FUN_000183-T1 123 STQTNFDLPQELQGIKEDLQRLKEENDKLKAKLDDKETLKRELF 166 579******************************99988888886 PP >> UPF0242 Uncharacterised protein family (UPF0242) N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 4.0 2.3e-05 0.073 72 143 .. 90 169 .. 59 175 .. 0.72 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.3e-05 UPF0242 72 ekeallteed....aedlkilee......eleelqseeeeleeelsqkeeeleklkeekeqlklkleqisqdfaefklesee 143 kea +t+++ ae +k ++ +++++ + +l +el+ +e l++lkee+++lk kl++ ++ + +l++ + FUN_000183-T1 90 LKEARITQLKsavaAEAVKHDHDycshkdFHDKSTQTNFDLPQELQGIKEDLQRLKEENDKLKAKLDD--KETLKRELFMGD 169 4555555555555544444444444333256677888899**************************99..555555555555 PP >> Seadorna_VP6 Seadornavirus VP6 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.5 5.7e-05 0.18 2 38 .. 125 159 .. 124 175 .. 0.81 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 5.7e-05 Seadorna_VP6 2 aEnqeLrdevvdlreenealkaennvLkrklaaLeee 38 + n++L +e+ ++e+ ++lk+en++Lk+kl ++e FUN_000183-T1 125 QTNFDLPQELQGIKEDLQRLKEENDKLKAKLD--DKE 159 6799999**********************986..444 PP >> DUF2443 Protein of unknown function (DUF2443) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 1.3 4e+03 44 68 .. 79 104 .. 76 109 .. 0.67 2 ? 10.5 0.5 0.00021 0.64 41 77 .. 128 166 .. 118 167 .. 0.86 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 1.3 -TTS-HHHHHHHHH.HHHHHHHHHHH CS DUF2443 44 Peslnvafltqide.evekLkeaida 68 Pe+ + ++ ++e ++ +Lk a+ a FUN_000183-T1 79 PEHREDCTYQPLKEaRITQLKSAVAA 104 66666666777665357788877654 PP == domain 2 score: 10.5 bits; conditional E-value: 0.00021 S---TTS-HH..HHHHHHHHHHHHHHHHHHHHHHHGGG- CS DUF2443 41 ldmPeslnva..fltqideevekLkeaidaLnkikkelL 77 d+P++l+ l++++ee +kLk+++d +k+el+ FUN_000183-T1 128 FDLPQELQGIkeDLQRLKEENDKLKAKLDDKETLKRELF 166 69999998542269***********************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (180 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 1656 (0.066947); expected 494.7 (0.02) Passed bias filter: 819 (0.0331096); expected 494.7 (0.02) Passed Vit filter: 113 (0.00456824); expected 24.7 (0.001) Passed Fwd filter: 8 (0.000323415); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.35 # Mc/sec: 2037.46 // Query: FUN_000184-T1 [L=721] Description: FUN_000184 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-66 225.6 9.5 1.2e-66 225.6 9.5 1.9 2 Zip ZIP Zinc transporter 9.2e-15 55.2 2.2 2.3e-10 40.9 0.4 2.8 3 ZIP4_domain Zinc transporter ZIP4 domain 9e-10 39.6 8.6 2.5e-07 31.7 1.1 4.5 4 EF-hand_Zip Zip protein EF-hand ------ inclusion threshold ------ 0.017 15.4 0.0 0.035 14.4 0.0 1.4 1 Fapy_DNA_glyco_C Formamidopyrimidine-DNA glycosylase C-termi 0.078 13.2 0.0 0.16 12.2 0.0 1.5 1 Cas8b_C Type I-B CRISPR Cas8b C-terminal domain Domain annotation for each model (and alignments): >> Zip ZIP Zinc transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.5 0.2 9.8e+02 124 159 .. 259 294 .. 232 318 .. 0.71 2 ! 225.6 9.5 2.4e-70 1.2e-66 2 323 .] 373 710 .. 372 710 .. 0.81 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 0.2 Zip 124 eveeseekedhgseeksdadskeklkkgkeekseee 159 e+++++ +dhg++++ +++++ l +ke s+++ FUN_000184-T1 259 ETSSESTAHDHGHHHRRRRSTTAALLPRKELVSSHA 294 455666667888888888887777777777666665 PP == domain 2 score: 225.6 bits; conditional E-value: 2.4e-70 Zip 2 llkilaifaillisliglllpllvpkikklaskkllslllafaaGvllataflhllPealealeslqled....htw......pfaglivllGfll 87 +++ ++i a++lisl +l ++ +p i k+ ++k+l ll+++a+G l ++++lhllP++++ + ++++e+ h++ +++ ++vl ++++ FUN_000184-T1 373 KIWGYGIGAVTLISLTSLAGVATIPFIGKRLYNKVLDLLVGLAVGSLAGDGLLHLLPHSFGLHAHEEEEStgdsHDHsedhafIWKAMVVLASIYV 468 5799********************************************************9888887777666666699***************** PP Zip 88 vllveklltllver.......ktpkkeksshshkatvksvseeeveeseekedhgseeksdadskeklkkgkeekseeekeks......eeedkek 170 ++l+e l++l +++ + k+e++ ++ k + +++ v + +++d+++ +sd+ + e+++ g s +++k + FUN_000184-T1 469 FYLFEILTHLGLKSkflglsrHELKPEEQLRKGKTEIPKDNKDIVLMNASSKDVQDVIQSDKGDHENERVGA----------SlqprssASSKKNS 554 *********999995555544222222222222222222333333333333444444444444333333333..........23333335567789 PP Zip 171 laslrvraillllgiilHsfieGLalG..vssss....stgislliAvllHelpeglglgaiLlqagfsrkkavllallfalttplGiliGilvss 260 ++++ +a+++++g++lH++++GLa+G +s++ s gis++iAv++Help++lg++a+Ll+ag+s+k a+++++l+al++ +G++iGi FUN_000184-T1 555 WKNISAVAWMIIIGDSLHNISDGLAIGavFSQGGpsgiSGGISTSIAVFCHELPHELGDFAVLLKAGMSVKMALVANFLSALSCFIGLFIGIE--- 647 999*************************988765111167789*************************************************9... PP Zip 261 ieessgadivsgillafsAGtflYvalvellprellrek....sslklsllqllalllGfalmalla 323 ++ v +++a+++G+flYvalv++lp +l ++k + l+++llq+++ll+Gf++++++a FUN_000184-T1 648 ---VGQQGEVRLWFFAIAGGIFLYVALVDMLP-HLIHSKtlkaEPLVTFLLQNVGLLVGFGILLIIA 710 ...789999***********************.9999999***99*******************997 PP >> ZIP4_domain Zinc transporter ZIP4 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 0.0 0.0006 3 73 154 .. 30 113 .. 26 118 .. 0.78 2 ! 40.9 0.4 4.6e-14 2.3e-10 15 160 .] 74 217 .. 56 217 .. 0.86 3 ! 13.0 0.0 1.8e-05 0.089 111 159 .. 310 355 .. 298 356 .. 0.90 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.0006 HHHHHHHHH......HSTTTHHHH.HHHHHHHHH..HC------...---B-HHHHHHHCSSTT----HHH.......HHHHHHHHH CS ZIP4_domain 73 eadhllykllslrqdedsealsqgelerllqriq..qhyktses...eaCvdvsqLleeanvagaedspgadektlpkvlaaildhv 154 +h +y++ +lr++ + ++l+ +e ++l ++++ + +t+++ +C+++++L e + s g + +++ + i++ + FUN_000184-T1 30 SRQHGDYSFKDLREAVNGDYLTPEEQQTLFNSLHllNCNETKNEldyRKCFTTNDLHEFEGS---SASRGLNSTEFTDISPVIIYCL 113 45788999999999999999999999999999997544444444789889999999876666...6777888888888888888765 PP == domain 2 score: 40.9 bits; conditional E-value: 4.6e-14 SHHHCT--HHHHHHT-TT..........HHHHHHHHHHHHH...H-HHHHHHHHHTT-HHHHHHHHHHHH......HSTTTHHHH.HHHHHHHHHH CS ZIP4_domain 15 gdCekcLevdallalasggdsedvLeeevfqrlsaalllYl...snpedvCaskragrwaseadhllykllslrqdedsealsqgelerllqriqq 107 d kc++ ++l g +++ L++ +f+ +s ++++ l s+++++ + + + +s+ + +++ + + + ++e +s + le++l++i++ FUN_000184-T1 74 LDYRKCFTTNDLHEFE-GSSASRGLNSTEFTDISPVIIYCLlptSSQKNLVGEPCDISRKSHEQIFDAFV--SNFSKGQEGISYKGLETILKQINN 166 55679**********9.*****************998888755579999998888888888888777777..56689999***************9 PP C------.---B-HHHHHHHCSSTT----HHH.......HHHHHHHHHHCT--B CS ZIP4_domain 108 hyktses.eaCvdvsqLleeanvagaedspgadektlpkvlaaildhvlqGsCf 160 ++++ + ++C+++ + +e+ e+ + d++++ + +a+i+ h++qG C+ FUN_000184-T1 167 TVGQFFTkKKCFSADSIIKEVLK---EEGNTLDQNEFKRACASIILHLVQGYCI 217 9988766699***********99...8899999********************5 PP == domain 3 score: 13.0 bits; conditional E-value: 1.8e-05 -------B-HHHHHHHCSSTT----HHH.......HHHHHHHHHHCT-- CS ZIP4_domain 111 tseseaCvdvsqLleeanvagaedspgadektlpkvlaaildhvlqGsC 159 +++s +C ++ +Ll+ +v ++s gad +++++++ a ++++++G+C FUN_000184-T1 310 HQTSGTCYSLDDLLTIFDV---DHSTGADRDDFQNLCPAFIQQAKSGAC 355 455678*************...9************************** PP >> EF-hand_Zip Zip protein EF-hand # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.8 0.0 0.0014 6.8 63 106 .. 69 113 .. 24 117 .. 0.82 2 ! 31.7 1.1 5e-11 2.5e-07 3 110 .] 231 354 .. 229 354 .. 0.68 3 ? -3.1 0.1 3.4 1.7e+04 31 49 .. 432 450 .. 419 464 .. 0.58 4 ? 0.0 0.1 0.35 1.7e+03 40 72 .. 527 559 .. 510 572 .. 0.66 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0014 --SSGGC.C----HHHHHHHTT--TTT-B-HHHHHHHHHHHHHHH CS EF-hand_Zip 63 ssssvWd.tlclsardvlavyGlseqaGvtpeawaqlsPallqqq 106 + ++ d + c++++d+ + G s G+ +++ +sP ++ + FUN_000184-T1 69 ETKNELDyRKCFTTNDLHEFEGSSASRGLNSTEFTDISPVIIYCL 113 4444444257*****************************998665 PP == domain 2 score: 31.7 bits; conditional E-value: 5e-11 HHHHHHHHHS--SSSSB-HHHHHHHHHHTT-S-----...--------.................-------------........----SSGGCC CS EF-hand_Zip 3 yfvdfvfrqhsseapnitlaelealmerlgvGgeaet...hddhseee.................rkasrqgpvalta........tnssssvWdt 70 +f++ +f ++ ++ +++ +++++lg+G+++++ hd++++++ a + ++ ++ t FUN_000184-T1 231 FFINDIFM----HKSHLSREDFHEIIKSLGIGETSSEstaHDHGHHHRrrrsttaallprkelvsS----------HAvyrreidpHGNQVDAHQT 312 56666666....34567889999*********8765344588877777445555544444322211..........11222222334444444444 PP ..----HHHHHHHTT--TTT-B-HHHHHHHHHHHHHHHHH-- CS EF-hand_Zip 71 ..lclsardvlavyGlseqaGvtpeawaqlsPallqqqlsga 110 c+s d+l ++ ++ +G ++++ +l Pa++qq sga FUN_000184-T1 313 sgTCYSLDDLLTIFDVDHSTGADRDDFQNLCPAFIQQAKSGA 354 337***********************************9997 PP == domain 3 score: -3.1 bits; conditional E-value: 3.4 TT-S--------------- CS EF-hand_Zip 31 lgvGgeaethddhseeerk 49 +g+ +++e+ + +++++++ FUN_000184-T1 432 FGLHAHEEEESTGDSHDHS 450 5555544443333333222 PP == domain 4 score: 0.0 bits; conditional E-value: 0.35 -------------------------SSGGCC-- CS EF-hand_Zip 40 hddhseeerkasrqgpvaltatnssssvWdtlc 72 +d+ ++e++ ++ ++ s++++W ++ FUN_000184-T1 527 QSDKGDHENERVGASLQPRSSASSKKNSWKNIS 559 455555555555556666777777777887764 PP >> Fapy_DNA_glyco_C Formamidopyrimidine-DNA glycosylase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 7e-06 0.035 13 34 .. 294 315 .. 288 318 .. 0.89 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 7e-06 SSTT-SB-TTS-B-EEEE-S-- CS Fapy_DNA_glyco_C 13 lVYRkkkDPlGNkVkadKiiGs 34 VYR++ DP GN+V a + G+ FUN_000184-T1 294 AVYRREIDPHGNQVDAHQTSGT 315 6*************99888765 PP >> Cas8b_C Type I-B CRISPR Cas8b C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 3.3e-05 0.16 60 141 .. 153 232 .. 124 256 .. 0.79 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 3.3e-05 Cas8b_C 60 wytgfdklletlpa...elfieepfFgrdvrekfkelieeekeekemkeeeaeeeeleelvyrlvksYvlskleekyglkwkkek 141 y+g++++l++++ ++f++++ F+ d +ke+ ++e ++++++e ++++++++ +lv+ Y + + e+ +l k++ FUN_000184-T1 153 SYKGLETILKQINNtvgQFFTKKKCFSADSI--IKEVL--KEEGNTLDQNEF-KRACASIILHLVQGYCIGQNETLKKLPSKAFF 232 5889999999988655688999*****9953..33333..367899999988.9****************999998888877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 24736 (3976475 nodes) Passed MSV filter: 783 (0.0316543); expected 494.7 (0.02) Passed bias filter: 601 (0.0242966); expected 494.7 (0.02) Passed Vit filter: 56 (0.00226391); expected 24.7 (0.001) Passed Fwd filter: 5 (0.000202135); expected 0.2 (1e-05) Initial search space (Z): 24736 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.57u 0.20s 00:00:00.77 Elapsed: 00:00:00.35 # Mc/sec: 8008.29 //