barnacle (gene expression tensor decomposition) output is at 

M-multi-species/output/27-rank35-optimization/lambda_gene_0.2/barnacle_factors

and includes 
component_weights.csv  gene_factors.csv  metadata.json  sample_factors.csv  sample_mapping.csv  time_factors.csv

note there are 35 ranks and most column headers are incorrect in that first column is a factor ID and the second column would be value for rank 01. 

Take gene_factors.csv file and determine which genes (eg OG_00001) have scores >0 in rank 05 and plot the values of these values across 35 ranks.

Then for those genes in rank 05 (top 100 values) determine which epigenetic features correspond to expression and thus could be regulating, importantly denoting when the same epigenetic feature is found to be correlated in the same gene across multiple species. 

Gene Expression Matrices:
https://raw.githubusercontent.com/urol-e5/timeseries-molecular-calcification/refs/heads/main/M-multi-species/output/33-biomin-pathway-counts/apul_biomin_counts.csv

https://raw.githubusercontent.com/urol-e5/timeseries-molecular-calcification/refs/heads/main/M-multi-species/output/33-biomin-pathway-counts/peve_biomin_counts.csv

https://raw.githubusercontent.com/urol-e5/timeseries-molecular-calcification/refs/heads/main/M-multi-species/output/33-biomin-pathway-counts/ptua_biomin_counts.csv


Epigenetic Feature
long non-coding RNA

Acropora pulchra
https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/timeseries_molecular/D-Apul/output/31.5-Apul-lncRNA-discovery/lncRNA_counts.clean.filtered.txt

Porites evermanni
https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/timeseries_molecular/E-Peve/output/12-Peve-lncRNA-discovery/lncRNA_counts.clean.filtered.txt

Pocillopora tuahiniensis
https://raw.githubusercontent.com/urol-e5/timeseries_molecular/refs/heads/main/F-Ptua/output/06-Ptua-lncRNA-discovery/lncRNA_counts.clean.filtered.txt 


Epigenetic Feature
Gene Body Methylation 

Acropora pulchra
https://raw.githubusercontent.com/urol-e5/timeseries-molecular-calcification/refs/heads/main/D-Apul/output/40-Apul-Gene-Methylation/Apul-gene-methylation_75pct.tsv 

Porites evermanni
https://raw.githubusercontent.com/urol-e5/timeseries-molecular-calcification/refs/heads/main/E-Peve/output/15-Peve-Gene-Methylation/Peve-gene-methylation_75pct.tsv 

Pocillopora tuahiniensis
https://raw.githubusercontent.com/urol-e5/timeseries-molecular-calcification/refs/heads/main/F-Ptua/output/09-Ptua-Gene-Methylation/Ptua-gene-methylation_75pct.tsv

Epigenetic Feature
miRNA 
 https://raw.githubusercontent.com/urol-e5/timeseries_molecular/refs/heads/main/M-multi-species/output/10-format-miRNA-counts/Apul_miRNA_counts_formatted.txt 
 
  https://raw.githubusercontent.com/urol-e5/timeseries_molecular/refs/heads/main/M-multi-species/output/10-format-miRNA-counts/Peve_miRNA_counts_formatted.txt 
  
   https://raw.githubusercontent.com/urol-e5/timeseries_molecular/refs/heads/main/M-multi-species/output/10-format-miRNA-counts/Ptuh_miRNA_counts_formatted.txt