Sample	total_passed	total_failed	secondary_passed	secondary_failed	supplementary_passed	supplementary_failed	duplicates_passed	duplicates_failed	mapped_passed	mapped_failed	mapped_passed_pct	mapped_failed_pct	paired in sequencing_passed	paired in sequencing_failed	read1_passed	read1_failed	read2_passed	read2_failed	properly paired_passed	properly paired_failed	properly paired_passed_pct	properly paired_failed_pct	with itself and mate mapped_passed	with itself and mate mapped_failed	singletons_passed	singletons_failed	singletons_passed_pct	singletons_failed_pct	with mate mapped to a different chr_passed	with mate mapped to a different chr_failed	with mate mapped to a different chr (mapQ >= 5)_passed	with mate mapped to a different chr (mapQ >= 5)_failed	flagstat_total
ACR-139-TP1-hisat2_output	40514601	0	5088507	0	0	0	0	0	31644044	0	78.11	nan	35426094	0	17713047	0	17713047	0	21811588	0	61.57	nan	24359840	0	2195697	0	6.2	nan	186360	0	103532	0	40514601
ACR-139-TP2-hisat2_output	42904338	0	4335510	0	0	0	0	0	32362061	0	75.43	nan	38568828	0	19284414	0	19284414	0	23263232	0	60.32	nan	25848236	0	2178315	0	5.65	nan	147814	0	83548	0	42904338
ACR-139-TP3-hisat2_output	40692395	0	4775143	0	0	0	0	0	32856425	0	80.74	nan	35917252	0	17958626	0	17958626	0	22437088	0	62.47	nan	26037950	0	2043332	0	5.69	nan	125070	0	64994	0	40692395
ACR-139-TP4-hisat2_output	46419221	0	5935009	0	0	0	0	0	36451171	0	78.53	nan	40484212	0	20242106	0	20242106	0	24470950	0	60.45	nan	28215652	0	2300510	0	5.68	nan	189820	0	98888	0	46419221
ACR-145-TP1-hisat2_output	55888296	0	12722498	0	0	0	0	0	45161238	0	80.81	nan	43165798	0	21582899	0	21582899	0	25445716	0	58.95	nan	30315876	0	2122864	0	4.92	nan	198208	0	91367	0	55888296
ACR-145-TP2-hisat2_output	39220770	0	3832016	0	0	0	0	0	25300311	0	64.51	nan	35388754	0	17694377	0	17694377	0	17477094	0	49.39	nan	20004756	0	1463539	0	4.14	nan	106568	0	55165	0	39220770
ACR-145-TP3-hisat2_output	51798755	0	5706631	0	0	0	0	0	39742302	0	76.72	nan	46092124	0	23046062	0	23046062	0	24893998	0	54.01	nan	31771330	0	2264341	0	4.91	nan	172336	0	77211	0	51798755
ACR-145-TP4-hisat2_output	48763252	0	6009128	0	0	0	0	0	36226167	0	74.29	nan	42754124	0	21377062	0	21377062	0	23358292	0	54.63	nan	27963846	0	2253193	0	5.27	nan	187328	0	93285	0	48763252
ACR-150-TP1-hisat2_output	54180266	0	8284816	0	0	0	0	0	38904880	0	71.81	nan	45895450	0	22947725	0	22947725	0	22545856	0	49.12	nan	28788764	0	1831300	0	3.99	nan	200580	0	75068	0	54180266
ACR-150-TP2-hisat2_output	42383163	0	5768531	0	0	0	0	0	34169086	0	80.62	nan	36614632	0	18307316	0	18307316	0	23210154	0	63.39	nan	26478818	0	1921737	0	5.25	nan	149774	0	79882	0	42383163
ACR-150-TP3-hisat2_output	40498238	0	5252792	0	0	0	0	0	32629364	0	80.57	nan	35245446	0	17622723	0	17622723	0	22518420	0	63.89	nan	25350788	0	2025784	0	5.75	nan	173678	0	93328	0	40498238
ACR-150-TP4-hisat2_output	46596213	0	4389957	0	0	0	0	0	37880626	0	81.3	nan	42206256	0	21103128	0	21103128	0	27599718	0	65.39	nan	31123486	0	2367183	0	5.61	nan	169724	0	93486	0	46596213
ACR-173-TP1-hisat2_output	46990215	0	10382259	0	0	0	0	0	36680081	0	78.06	nan	36607956	0	18303978	0	18303978	0	19950804	0	54.5	nan	24326896	0	1970926	0	5.38	nan	251380	0	111943	0	46990215
ACR-173-TP2-hisat2_output	36982058	0	4920634	0	0	0	0	0	27797302	0	75.16	nan	32061424	0	16030712	0	16030712	0	18645248	0	58.15	nan	21109948	0	1766720	0	5.51	nan	143370	0	78212	0	36982058
ACR-173-TP3-hisat2_output	46524236	0	5006112	0	0	0	0	0	36720695	0	78.93	nan	41518124	0	20759062	0	20759062	0	24519378	0	59.06	nan	29484278	0	2230305	0	5.37	nan	148828	0	72660	0	46524236
ACR-173-TP4-hisat2_output	39792121	0	5345161	0	0	0	0	0	30116176	0	75.68	nan	34446960	0	17223480	0	17223480	0	18429490	0	53.5	nan	23255134	0	1515881	0	4.4	nan	141408	0	54970	0	39792121
ACR-186-TP1-hisat2_output	36091405	0	3005123	0	0	0	0	0	22090136	0	61.21	nan	33086282	0	16543141	0	16543141	0	13628386	0	41.19	nan	18025560	0	1059453	0	3.2	nan	107004	0	38680	0	36091405
ACR-186-TP2-hisat2_output	38990573	0	4628915	0	0	0	0	0	30392414	0	77.95	nan	34361658	0	17180829	0	17180829	0	21297136	0	61.98	nan	23865138	0	1898361	0	5.52	nan	121742	0	68142	0	38990573
ACR-186-TP3-hisat2_output	35551004	0	3063070	0	0	0	0	0	27270193	0	76.71	nan	32487934	0	16243967	0	16243967	0	18462044	0	56.83	nan	22479526	0	1727597	0	5.32	nan	110094	0	53318	0	35551004
ACR-186-TP4-hisat2_output	41898404	0	5148604	0	0	0	0	0	34192248	0	81.61	nan	36749800	0	18374900	0	18374900	0	23846658	0	64.89	nan	26977464	0	2066180	0	5.62	nan	138046	0	77810	0	41898404
ACR-225-TP1-hisat2_output	38552065	0	5464575	0	0	0	0	0	30632941	0	79.46	nan	33087490	0	16543745	0	16543745	0	19983320	0	60.4	nan	23389850	0	1778516	0	5.38	nan	120890	0	61308	0	38552065
ACR-225-TP2-hisat2_output	44658755	0	5803253	0	0	0	0	0	34843641	0	78.02	nan	38855502	0	19427751	0	19427751	0	23316812	0	60.01	nan	26523300	0	2517088	0	6.48	nan	220836	0	119694	0	44658755
ACR-225-TP3-hisat2_output	46972696	0	6149224	0	0	0	0	0	37224412	0	79.25	nan	40823472	0	20411736	0	20411736	0	24633262	0	60.34	nan	28747414	0	2327774	0	5.7	nan	172540	0	87509	0	46972696
ACR-225-TP4-hisat2_output	36448522	0	4580038	0	0	0	0	0	28032380	0	76.91	nan	31868484	0	15934242	0	15934242	0	18170842	0	57.02	nan	21884438	0	1567904	0	4.92	nan	110262	0	52007	0	36448522
ACR-229-TP1-hisat2_output	49612813	0	6505735	0	0	0	0	0	41042399	0	82.73	nan	43107078	0	21553539	0	21553539	0	27952968	0	64.85	nan	32056694	0	2479970	0	5.75	nan	183648	0	100577	0	49612813
ACR-229-TP2-hisat2_output	41803881	0	4129395	0	0	0	0	0	33313398	0	79.69	nan	37674486	0	18837243	0	18837243	0	23475538	0	62.31	nan	26897182	0	2286821	0	6.07	nan	170126	0	92566	0	41803881
ACR-229-TP3-hisat2_output	38655660	0	4484470	0	0	0	0	0	31201869	0	80.72	nan	34171190	0	17085595	0	17085595	0	21790608	0	63.77	nan	24560170	0	2157229	0	6.31	nan	165360	0	91208	0	38655660
ACR-229-TP4-hisat2_output	52002278	0	6953202	0	0	0	0	0	38018518	0	73.11	nan	45049076	0	22524538	0	22524538	0	22135784	0	49.14	nan	29152648	0	1912668	0	4.25	nan	176306	0	72834	0	52002278
ACR-237-TP1-hisat2_output	49277546	0	5060792	0	0	0	0	0	39059350	0	79.26	nan	44216754	0	22108377	0	22108377	0	25970038	0	58.73	nan	31853474	0	2145084	0	4.85	nan	170036	0	80198	0	49277546
ACR-237-TP2-hisat2_output	37016338	0	3729080	0	0	0	0	0	26888120	0	72.64	nan	33287258	0	16643629	0	16643629	0	18747178	0	56.32	nan	21396432	0	1762608	0	5.3	nan	136010	0	73373	0	37016338
ACR-237-TP3-hisat2_output	39521107	0	4195639	0	0	0	0	0	32434483	0	82.07	nan	35325468	0	17662734	0	17662734	0	23465304	0	66.43	nan	26268816	0	1970028	0	5.58	nan	155094	0	85564	0	39521107
ACR-237-TP4-hisat2_output	54813649	0	7327451	0	0	0	0	0	43422970	0	79.22	nan	47486198	0	23743099	0	23743099	0	28149436	0	59.28	nan	33886736	0	2208783	0	4.65	nan	155842	0	77029	0	54813649
ACR-244-TP1-hisat2_output	41350464	0	2451050	0	0	0	0	0	21271892	0	51.44	nan	38899414	0	19449707	0	19449707	0	14997776	0	38.56	nan	17527392	0	1293450	0	3.33	nan	89194	0	45353	0	41350464
ACR-244-TP2-hisat2_output	48088052	0	4708162	0	0	0	0	0	36034495	0	74.93	nan	43379890	0	21689945	0	21689945	0	25398860	0	58.55	nan	28962220	0	2364113	0	5.45	nan	204132	0	108790	0	48088052
ACR-244-TP3-hisat2_output	51809330	0	7248262	0	0	0	0	0	41354431	0	79.82	nan	44561068	0	22280534	0	22280534	0	27836940	0	62.47	nan	31254796	0	2851373	0	6.4	nan	278450	0	153140	0	51809330
ACR-244-TP4-hisat2_output	49202140	0	5294522	0	0	0	0	0	36699713	0	74.59	nan	43907618	0	21953809	0	21953809	0	23269916	0	53.0	nan	29462984	0	1942207	0	4.42	nan	142016	0	63095	0	49202140
ACR-265-TP1-hisat2_output	69842228	0	11241758	0	0	0	0	0	53602337	0	76.75	nan	58600470	0	29300235	0	29300235	0	31296266	0	53.41	nan	39770434	0	2590145	0	4.42	nan	231424	0	97985	0	69842228
ACR-265-TP2-hisat2_output	47914940	0	5278662	0	0	0	0	0	37997824	0	79.3	nan	42636278	0	21318139	0	21318139	0	26083342	0	61.18	nan	30155814	0	2563348	0	6.01	nan	212428	0	114076	0	47914940
ACR-265-TP3-hisat2_output	50566296	0	8191892	0	0	0	0	0	39720352	0	78.55	nan	42374404	0	21187202	0	21187202	0	24244612	0	57.22	nan	29150952	0	2377508	0	5.61	nan	234396	0	112862	0	50566296
ACR-265-TP4-hisat2_output	53756971	0	6027143	0	0	0	0	0	40764652	0	75.83	nan	47729828	0	23864914	0	23864914	0	26498028	0	55.52	nan	32586594	0	2150915	0	4.51	nan	145264	0	66811	0	53756971