[2025-05-29 21:01:27,478] multiqc [DEBUG ] This is MultiQC v1.14 [2025-05-29 21:01:27,479] multiqc [DEBUG ] Found command line config: {'sp': {'fastp': {'fn': '*report.json'}}} [2025-05-29 21:01:27,479] multiqc [DEBUG ] Added to filename patterns: [{'fastp': {'fn': '*report.json'}}] [2025-05-29 21:01:27,479] multiqc [DEBUG ] Command used: /home/sam/programs/mambaforge/bin/multiqc . --cl-config sp: { fastp: { fn: '*report.json' } } --interactive [2025-05-29 21:01:28,435] multiqc [WARNING] MultiQC Version v1.29 now available! [2025-05-29 21:01:28,436] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/output/01.00-E-Peve-WGBS-trimming-fastp-FastQC-MultiQC [2025-05-29 21:01:28,436] multiqc [DEBUG ] Template : default [2025-05-29 21:01:28,436] multiqc [DEBUG ] Running Python 3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:08:06) [GCC 11.3.0] [2025-05-29 21:01:28,437] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umitools, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, cellranger, snpsplit, odgi, pangolin, nextclade, humid, kat, leehom, adapterRemoval, bbduk, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-05-29 21:01:28,437] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpasvj3ped [2025-05-29 21:01:28,882] multiqc [INFO ] Search path : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/output/01.00-E-Peve-WGBS-trimming-fastp-FastQC-MultiQC [2025-05-29 21:01:34,243] multiqc [DEBUG ] Summary of files that were skipped by the search: [skipped_module_specific_max_filesize: 1178] // [skipped_no_match: 304] // [skipped_ignore_pattern: 152] [2025-05-29 21:01:35,065] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.7.1 [2025-05-29 21:01:35,065] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.7.1 [2025-05-29 21:01:35,066] multiqc [DEBUG ] No samples found: custom_content [2025-05-29 21:01:35,090] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-73-TP1_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,094] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-236-TP2_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,098] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-74-TP4_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,103] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-262-TP4_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,106] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-73-TP3_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,109] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-236-TP1_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,112] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-216-TP3_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,114] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-69-TP1_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,117] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-216-TP4_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,119] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-74-TP3_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,122] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-69-TP2_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,124] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-74-TP1_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,126] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-83-TP1_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,128] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-69-TP4_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,153] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-72-TP2_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,157] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-83-TP2_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,168] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-72-TP4_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,173] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-83-TP3_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,177] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-262-TP2_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,182] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-74-TP2_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,211] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-262-TP3_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,216] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-260-TP1_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,222] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-260-TP2_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,226] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-262-TP1_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,247] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-73-TP2_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,254] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-245-TP4_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,259] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-245-TP2_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,263] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-260-TP3_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,266] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-245-TP3_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,271] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-73-TP4_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,274] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-72-TP3_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,276] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-260-TP4_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,278] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-245-TP1_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,281] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-216-TP1_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,283] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-69-TP3_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,285] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-83-TP4_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,288] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-216-TP2_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,291] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POR-72-TP1_R1_001.fastp-trim.report.json [2025-05-29 21:01:35,291] multiqc.modules.fastp.fastp [INFO ] Found 38 reports [2025-05-29 21:01:44,386] multiqc.modules.fastqc.fastqc [INFO ] Found 76 reports [2025-05-29 21:01:45,456] multiqc [INFO ] Compressing plot data [2025-05-29 21:01:48,229] multiqc [INFO ] Report : multiqc_report.html [2025-05-29 21:01:48,229] multiqc [INFO ] Data : multiqc_data [2025-05-29 21:01:48,229] multiqc [DEBUG ] Moving data file from '/tmp/tmpasvj3ped/multiqc_data' to '/home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/output/01.00-E-Peve-WGBS-trimming-fastp-FastQC-MultiQC/multiqc_data' [2025-05-29 21:01:48,367] multiqc [INFO ] MultiQC complete