Sample	total_reads	paired_total	paired_aligned_none	paired_aligned_one	paired_aligned_multi	paired_aligned_discord_one	paired_aligned_mate_none	paired_aligned_mate_one	paired_aligned_mate_multi	overall_alignment_rate	paired_aligned_mate_multi_halved	paired_aligned_mate_none_halved	paired_aligned_mate_one_halved
ACR-139-TP1_hisat2	17713047	17713047	6807294	10325549	580204	900353	8870419	2662371	281092	74.96	140546.0	4435209.5	1331185.5
ACR-139-TP2_hisat2	19284414	19284414	7655584	11091736	537094	939384	10542122	2630449	259829	72.67	129914.5	5271061.0	1315224.5
ACR-139-TP3_hisat2	17958626	17958626	6739975	10659988	558663	1356911	7835882	2680912	249334	78.18	124667.0	3917941.0	1340456.0
ACR-139-TP4_hisat2	20242106	20242106	8006623	11593584	641899	1409413	9967895	2927129	299396	75.38	149698.0	4983947.5	1463564.5
ACR-145-TP1_hisat2	21582899	21582899	8859982	11675328	1047589	1860438	10726912	2915011	357165	75.15	178582.5	5363456.0	1457505.5
ACR-145-TP2_hisat2	17694377	17694377	8955829	8297675	440873	964132	13920461	1882409	180524	60.66	90262.0	6960230.5	941204.5
ACR-145-TP3_hisat2	23046062	23046062	10597904	11871348	576810	2737114	12054987	3384896	281697	73.85	140848.5	6027493.5	1692448.0
ACR-145-TP4_hisat2	21377062	21377062	9689517	11080793	606752	1785226	12536749	3000509	271324	70.68	135662.0	6268374.5	1500254.5
ACR-150-TP1_hisat2	22947725	22947725	11674763	10533476	739486	2452080	15275296	2806907	363163	66.72	181581.5	7637648.0	1403453.5
ACR-150-TP2_hisat2	18307316	18307316	6701660	10997096	608560	1241846	8213567	2463918	242143	77.57	121071.5	4106783.5	1231959.0
ACR-150-TP3_hisat2	17622723	17622723	6363407	10692771	566545	1075327	7868719	2459672	247769	77.67	123884.5	3934359.5	1229836.0
ACR-150-TP4_hisat2	21103128	21103128	7303202	13256124	543802	1360714	8715483	2937864	231629	79.35	115814.5	4357741.5	1468932.0
ACR-173-TP1_hisat2	18303978	18303978	8328505	9088692	886781	1637364	10309973	2638339	433970	71.84	216985.0	5154986.5	1319169.5
ACR-173-TP2_hisat2	16030712	16030712	6710499	8811608	508605	915279	9184590	2188491	217359	71.35	108679.5	4592295.0	1094245.5
ACR-173-TP3_hisat2	20759062	20759062	8499506	11695656	563900	1936771	9803769	3050028	271673	76.39	135836.5	4901884.5	1525014.0
ACR-173-TP4_hisat2	17223480	17223480	8008702	8690035	524743	1885515	9675936	2309030	261408	71.91	130704.0	4837968.0	1154515.0
ACR-186-TP1_hisat2	16543141	16543141	9728909	6509243	304989	1748408	14001192	1766853	192957	57.68	96478.5	7000596.0	883426.5
ACR-186-TP2_hisat2	17180829	17180829	6510840	10115965	554024	925245	8594688	2354896	221606	74.99	110803.0	4297344.0	1177448.0
ACR-186-TP3_hisat2	16243967	16243967	7016112	8839956	387899	1568294	8281796	2399439	214401	74.51	107200.5	4140898.0	1199719.5
ACR-186-TP4_hisat2	18374900	18374900	6451794	11341345	581761	1200062	7706441	2578075	218948	79.03	109474.0	3853220.5	1289037.5
ACR-225-TP1_hisat2	16543745	16543745	6552206	9441831	549708	1324161	7918911	2327536	209643	76.07	104821.5	3959455.5	1163768.0
ACR-225-TP2_hisat2	19427751	19427751	7770269	10984177	673305	1144842	9816277	3033009	401568	74.74	200784.0	4908138.5	1516504.5
ACR-225-TP3_hisat2	20411736	20411736	8095226	11693029	623481	1600324	9748415	2970951	270438	76.12	135219.0	4874207.5	1485475.5
ACR-225-TP4_hisat2	15934242	15934242	6848791	8623462	461989	1441014	8416284	2211176	188094	73.59	94047.0	4208142.0	1105588.0
ACR-229-TP1_hisat2	21553539	21553539	7576933	13284296	692310	1574146	8570167	3155723	279684	80.12	139842.0	4285083.5	1577861.5
ACR-229-TP2_hisat2	18837243	18837243	7099492	11220025	517726	1269833	8490416	2877458	291444	77.46	145722.0	4245208.0	1438729.0
ACR-229-TP3_hisat2	17085595	17085595	6189575	10377137	518883	1034832	7452400	2604126	252960	78.19	126480.0	3726200.0	1302063.0
ACR-229-TP4_hisat2	22524538	22524538	11456265	10419446	648827	2771601	13982887	3077412	309029	68.96	154514.5	6991443.5	1538706.0
ACR-237-TP1_hisat2	22108377	22108377	9123041	12426561	558775	2330153	10217647	3100375	267754	76.89	133877.0	5108823.5	1550187.5
ACR-237-TP2_hisat2	16643629	16643629	7270070	8963645	409914	1020814	10128171	2179184	191157	69.57	95578.5	5064085.5	1089592.0
ACR-237-TP3_hisat2	17662734	17662734	5930061	11227400	505273	1074045	7086528	2412105	213399	79.94	106699.5	3543264.0	1206052.5
ACR-237-TP4_hisat2	23743099	23743099	9668413	13372218	702468	2288649	11390922	3111922	256684	76.01	128342.0	5695461.0	1555961.0
ACR-244-TP1_hisat2	19449707	19449707	11950830	7208360	290517	995100	20078565	1701878	131017	48.38	65508.5	10039282.5	850939.0
ACR-244-TP2_hisat2	21689945	21689945	8991167	12136976	561802	1349000	12055214	2951702	277418	72.21	138709.0	6027607.0	1475851.0
ACR-244-TP3_hisat2	22280534	22280534	8361971	13149803	768760	1256457	10454772	3357134	399122	76.54	199561.0	5227386.0	1678567.0
ACR-244-TP4_hisat2	21953809	21953809	10322251	11064808	566750	2437745	12502791	2988745	277476	71.52	138738.0	6251395.5	1494372.5
ACR-265-TP1_hisat2	29300235	29300235	13651982	14605822	1042431	3305311	16239855	4036715	416772	72.29	208386.0	8119927.5	2018357.5
ACR-265-TP2_hisat2	21318139	21318139	8266440	12421415	630284	1467762	9898326	3341839	357191	76.78	178595.5	4949163.0	1670919.5
ACR-265-TP3_hisat2	21187202	21187202	9068288	11334873	784041	1848782	10852221	3182452	404339	74.39	202169.5	5426110.5	1591226.0
ACR-265-TP4_hisat2	23864914	23864914	10620222	12591081	653611	2369855	12995542	3197888	307304	72.77	153652.0	6497771.0	1598944.0