[2025-08-28 07:30:19,803] multiqc                                            [DEBUG  ]  This is MultiQC v1.14
[2025-08-28 07:30:19,804] multiqc                                            [DEBUG  ]  Command used: /home/sam/programs/mambaforge/bin/multiqc --interactive .
[2025-08-28 07:30:20,389] multiqc                                            [WARNING]  MultiQC Version v1.30 now available!
[2025-08-28 07:30:20,390] multiqc                                            [DEBUG  ]  Working dir : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2
[2025-08-28 07:30:20,390] multiqc                                            [DEBUG  ]  Template    : default
[2025-08-28 07:30:20,390] multiqc                                            [DEBUG  ]  Running Python 3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:08:06) [GCC 11.3.0]
[2025-08-28 07:30:20,391] multiqc                                            [DEBUG  ]  Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umitools, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, cellranger, snpsplit, odgi, pangolin, nextclade, humid, kat, leehom, adapterRemoval, bbduk, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap
[2025-08-28 07:30:20,391] multiqc                                            [DEBUG  ]  Using temporary directory for creating report: /tmp/tmpd_1i60xl
[2025-08-28 07:30:20,873] multiqc                                            [INFO   ]  Search path : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2
[2025-08-28 07:34:27,723] multiqc                                            [DEBUG  ]  Summary of files that were skipped by the search: [skipped_module_specific_max_filesize: 2128] // [skipped_no_match: 442] // [skipped_ignore_pattern: 240] // [skipped_filesize_limit: 40]
[2025-08-28 07:34:28,713] multiqc.plots.bargraph                             [DEBUG  ]  Using matplotlib version 3.7.1
[2025-08-28 07:34:28,714] multiqc.plots.linegraph                            [DEBUG  ]  Using matplotlib version 3.7.1
[2025-08-28 07:34:28,715] multiqc                                            [DEBUG  ]  No samples found: custom_content
[2025-08-28 07:34:28,741] multiqc.modules.samtools.samtools                  [INFO   ]  Found 40 flagstat reports
[2025-08-28 07:34:28,771] multiqc.modules.bowtie2.bowtie2                    [INFO   ]  Found 40 reports
[2025-08-28 07:34:28,800] multiqc                                            [INFO   ]  Compressing plot data
[2025-08-28 07:34:28,825] multiqc                                            [INFO   ]  Report      : multiqc_report.html
[2025-08-28 07:34:28,825] multiqc                                            [INFO   ]  Data        : multiqc_data
[2025-08-28 07:34:28,825] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpd_1i60xl/multiqc_data' to '/home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/multiqc_data'
[2025-08-28 07:34:28,923] multiqc                                            [INFO   ]  MultiQC complete