🚀 Full Dataset Context-Dependent Analysis Report

📊 Executive Summary

This report presents the results of a comprehensive context-dependent regulatory analysis performed on the complete dataset, analyzing 100% of all available data including 36,084 genes, 15,900 lncRNAs, 51 miRNAs, and 249 methylation sites across 40 samples.

🎯 Analysis Scope & Performance

36,084
Total Genes Analyzed
6,171,026
Total Interactions
1,010,968
Context-Dependent
16.4%
Context-Dependence Rate

📈 Key Performance Metrics

0.069
Methylation-miRNA Improvement
0.042
lncRNA-miRNA Improvement
99.0%
Multi-Way Success Rate
48
Parallel CPU Cores

📊 Context-Dependent Interaction Distribution

Context-Dependent Distribution

📈 Interaction Improvements Analysis

Interaction Improvements

💪 Context Strength Comparison

Context Strength

🔗 Multi-Way Interaction Success

Multi-Way Interactions

📊 Overall Performance Summary

Performance Metrics

🏆 Top Context-Dependent Interactions

Top Methylation-miRNA Context Interactions

FUN_030163 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
FUN_036141 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
FUN_037387 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
FUN_011084 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
FUN_016825 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757

Top lncRNA-miRNA Context Interactions

FUN_035125 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
FUN_040982 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
FUN_042194 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
FUN_031114 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
FUN_031144 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581

Top Multi-Way Regulatory Networks

FUN_027118 | Improvement: 0.930
FUN_026689 | Improvement: 0.930
FUN_016064 | Improvement: 0.930
FUN_028898 | Improvement: 0.930
FUN_011752 | Improvement: 0.930

🔍 Key Insights & Findings

🎯 Comprehensive Coverage

This analysis represents the first time the complete dataset has been analyzed, providing unprecedented insights into regulatory networks across all available data.

⚡ High Performance

Utilizing 48 parallel CPU cores and optimized algorithms, the analysis processed over 6 million regulatory interactions efficiently.

🔬 Context-Dependent Discovery

Identified 1,010,968 context-dependent interactions, revealing complex regulatory mechanisms that depend on cellular context.

🌐 Multi-Way Networks

Successfully analyzed 36,084 multi-way regulatory networks with a 99.0% success rate, uncovering complex regulatory hierarchies.

📋 Technical Details

Analysis Parameters