FULL DATASET CONTEXT-DEPENDENT ANALYSIS REPORT
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ANALYSIS SCOPE:
• Total genes analyzed: 36,084 (100% of dataset)
• Total lncRNAs analyzed: 15,900 (100% of dataset)
• Total miRNAs analyzed: 51 (100% of dataset)
• Total methylation sites: 249 (100% of dataset)
• Total samples: 40

INTERACTION RESULTS:
• Total regulatory interactions: 6,171,026
• Context-dependent interactions: 1,010,968
• Context-dependence rate: 16.4%

PERFORMANCE METRICS:
• Mean improvement from methylation-miRNA: 0.069
• Mean improvement from lncRNA-miRNA: 0.042
• Multi-way success rate: 99.0%

TOP INTERACTIONS:
Top 10 Methylation-miRNA Context Interactions:
 1. FUN_030163 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
 2. FUN_036141 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
 3. FUN_037387 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
 4. FUN_011084 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
 5. FUN_016825 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
 6. FUN_033045 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
 7. FUN_040130 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
 8. FUN_035219 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
 9. FUN_039047 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757
10. FUN_039676 | methylation_CpG_ptg000011l_8393332 + mirna_Cluster_12081 | Improvement: 0.757

Top 10 lncRNA-miRNA Context Interactions:
 1. FUN_035125 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
 2. FUN_040982 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
 3. FUN_042194 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
 4. FUN_031114 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
 5. FUN_031144 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
 6. FUN_031155 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
 7. FUN_031160 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
 8. FUN_031168 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
 9. FUN_021180 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581
10. FUN_012959 | lncrna_lncRNA_38105 + mirna_Cluster_1951 | Improvement: 0.581