# Project notes

Lab logistics for the Berdahl sockeye salmon TagSeq project: sample shipping,
the sequencing quote and manifests, related lab-notebook issues, and working
documents. Moved here from `README.md` on 2026-09-27 so the README can describe
the analysis. Several links point to Dropbox and Google Drive files that may not
be public; consider whether this file belongs in a public archive of the
repository.

### Locations
1. [Gannet folder](https://gannet.fish.washington.edu/panopea/berdahl-sockeye-salmon/)
2. [Manuscript](https://docs.google.com/document/d/19xcEKJfSdz6b7KGZAEr76w9NrCF5RPQ99FFtRt-G-wI/edit?usp=sharing)

### Github issues:
1. [Sam's initial experiments w/ RNA extraction](https://github.com/RobertsLab/resources/issues/1307)
2. [Matt & Sam - issues with RNA extractions](https://github.com/RobertsLab/resources/issues/1410)
3. [GSAF sequencing results](https://github.com/RobertsLab/resources/issues/1501)

### Sequencing:
1. Salmon samples shipped to UT Austin GSAF on 5/24. Received 5/25. Assigned Job number JA22192.
2. Sample list and plate map available [here](https://www.dropbox.com/s/snq453edfxeor6t/Berdahl_sockeye_salmon.xlsx?dl=0)
3. Quote available [here](https://www.dropbox.com/s/znk1cikjtrj9v6n/GSAF_Quote_Job_JA22192_2022-05-09.pdf?dl=0)
4. GSAF sample manifest available [here](https://www.dropbox.com/s/9yuso7jhkazikrt/GSAF%20Sample%20Manifest_Job%23JA22192_2022-05-12.pdf?dl=0)

### Pertinent Documents
1. Sample attributes [list](https://docs.google.com/spreadsheets/d/1HVCK9HVTzWEkBT5vnbK97zJvnE4Amco5NPkmf_W9yVw/edit?usp=sharing)