method	regions	cov.bases	lo.count	hi.perc	samples	overdispersion	perm	perm.scheme	test	min.per.group	regions.tested	regions.tested.mito	qvalue	difference	DMR	hypermethylated	hypomethylated	DMR.mito	DMR.BH	primary
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.05	0	577	317	260	0	572	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.05	10	383	221	162	0	382	TRUE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.05	15	265	171	94	0	264	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.05	25	6	5	1	0	6	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.01	0	266	146	120	0	263	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.01	10	221	129	92	0	219	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.01	15	152	97	55	0	151	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.01	25	2	2	0	0	2	FALSE