method	regions	cov.bases	lo.count	hi.perc	samples	overdispersion	perm	perm.scheme	test	min.per.group	regions.tested	regions.tested.mito	qvalue	difference	DMR	hypermethylated	hypomethylated	DMR.mito	DMR.BH	primary
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.05	0	618	325	293	0	611	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.05	10	414	225	189	0	410	TRUE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.05	15	286	166	120	0	284	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.05	25	6	3	3	0	6	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.01	0	288	159	129	0	285	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.01	10	240	141	99	0	238	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.01	15	173	105	68	0	171	FALSE
methylKit	tile1000	3	10	99.9	All	MN	0	observed	ploidy	All	424348	18	0.01	25	2	1	1	0	2	FALSE