method	regions	cov.bases	lo.count	hi.perc	samples	overdispersion	perm	perm.scheme	test	min.per.group	regions.tested	regions.tested.mito	qvalue	difference	DMR	hypermethylated	hypomethylated	DMR.mito	DMR.BH	primary
methylKit	gene	3	10	99.9	All	MN	0	observed	ploidy	All	34058	0	0.05	0	301	145	156	0	300	FALSE
methylKit	gene	3	10	99.9	All	MN	0	observed	ploidy	All	34058	0	0.05	10	280	134	146	0	280	TRUE
methylKit	gene	3	10	99.9	All	MN	0	observed	ploidy	All	34058	0	0.05	15	139	86	53	0	139	FALSE
methylKit	gene	3	10	99.9	All	MN	0	observed	ploidy	All	34058	0	0.05	25	0	0	0	0	0	FALSE
methylKit	gene	3	10	99.9	All	MN	0	observed	ploidy	All	34058	0	0.01	0	275	135	140	0	275	FALSE
methylKit	gene	3	10	99.9	All	MN	0	observed	ploidy	All	34058	0	0.01	10	271	132	139	0	271	FALSE
methylKit	gene	3	10	99.9	All	MN	0	observed	ploidy	All	34058	0	0.01	15	138	86	52	0	138	FALSE
methylKit	gene	3	10	99.9	All	MN	0	observed	ploidy	All	34058	0	0.01	25	0	0	0	0	0	FALSE