Upper coverage cutoffs: 82, 82, 59, 66, 62, 75, 105, 62, 68, 72, 76, 61, 73, 79, 71, 94, 76, 72, 74, 72, 69, 58, 77
                                                step     CpGs mitoCpGs
1                              covered in any sample 12794074      393
2 after LO_COV = 5, HI_PERC = 99.9, PRESENCE = cell5  3213812      386
[1] TRUE
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.4 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0

locale:
[1] C

time zone: Etc/UTC
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] data.table_1.17.0 lubridate_1.9.4   forcats_1.0.0     stringr_1.5.1    
 [5] dplyr_1.1.4       purrr_1.0.4       readr_2.1.5       tidyr_1.3.1      
 [9] tibble_3.2.1      ggplot2_3.5.2     tidyverse_2.0.0  

loaded via a namespace (and not attached):
 [1] bit_4.6.0        gtable_0.3.6     compiler_4.4.3   crayon_1.5.3    
 [5] tidyselect_1.2.1 parallel_4.4.3   scales_1.3.0     R6_2.6.1        
 [9] generics_0.1.3   munsell_0.5.1    pillar_1.10.2    tzdb_0.5.0      
[13] rlang_1.1.5      stringi_1.8.7    bit64_4.6.0-1    timechange_0.3.0
[17] cli_3.6.4        withr_3.0.2      magrittr_2.0.3   grid_4.4.3      
[21] vroom_1.6.5      hms_1.1.3        lifecycle_1.0.4  vctrs_0.6.5     
[25] glue_1.8.0       colorspace_2.1-1 tools_4.4.3      pkgconfig_2.0.3