100 permutations with results term fdr minDiff nPerm permMean permMedian permMax observed 1 ploidy 0.05 0 100 222.62 170.0 1129 187 2 ploidy 0.05 10 100 222.35 170.0 1125 186 3 ploidy 0.05 25 100 120.15 95.5 630 99 4 ploidy 0.05 50 100 0.81 1.0 4 0 5 ploidy 0.01 0 100 50.94 36.0 326 24 6 ploidy 0.01 10 100 50.93 36.0 326 24 7 ploidy 0.01 25 100 34.45 26.0 224 19 8 ploidy 0.01 50 100 0.52 0.0 4 0 9 pH 0.05 0 100 192.67 138.5 808 185 10 pH 0.05 10 100 192.40 138.5 803 183 11 pH 0.05 25 100 101.70 70.5 416 94 12 pH 0.05 50 100 0.59 0.0 5 1 13 pH 0.01 0 100 38.81 25.0 199 32 14 pH 0.01 10 100 38.77 25.0 199 32 15 pH 0.01 25 100 25.90 17.5 114 20 16 pH 0.01 50 100 0.38 0.0 5 0 17 interaction 0.05 0 100 199.07 136.5 1331 280 18 interaction 0.05 10 100 199.07 136.5 1331 280 19 interaction 0.05 25 100 196.41 135.5 1298 276 20 interaction 0.05 50 100 103.84 72.0 656 135 21 interaction 0.01 0 100 41.39 27.5 410 58 22 interaction 0.01 10 100 41.39 27.5 410 58 23 interaction 0.01 25 100 41.19 26.5 408 58 24 interaction 0.01 50 100 26.89 17.5 249 41 nPermAtLeastObserved empiricalFDR empiricalP 1 43 1.0000000 0.4356436 2 44 1.0000000 0.4455446 3 48 1.0000000 0.4851485 4 100 NA 1.0000000 5 66 1.0000000 0.6633663 6 66 1.0000000 0.6633663 7 65 1.0000000 0.6534653 8 100 NA 1.0000000 9 36 1.0000000 0.3663366 10 36 1.0000000 0.3663366 11 42 1.0000000 0.4257426 12 38 0.5900000 0.3861386 13 43 1.0000000 0.4356436 14 43 1.0000000 0.4356436 15 46 1.0000000 0.4653465 16 100 NA 1.0000000 17 18 0.7109643 0.1881188 18 18 0.7109643 0.1881188 19 18 0.7116304 0.1881188 20 19 0.7691852 0.1980198 21 15 0.7136207 0.1584158 22 15 0.7136207 0.1584158 23 14 0.7101724 0.1485149 24 13 0.6558537 0.1386139 R version 4.4.3 (2025-02-28) Platform: x86_64-pc-linux-gnu Running under: Ubuntu 24.04.4 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0 locale: [1] C time zone: Etc/UTC tzcode source: system (glibc) attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] data.table_1.17.0 lubridate_1.9.4 forcats_1.0.0 stringr_1.5.1 [5] dplyr_1.1.4 purrr_1.0.4 readr_2.1.5 tidyr_1.3.1 [9] tibble_3.2.1 ggplot2_3.5.2 tidyverse_2.0.0 loaded via a namespace (and not attached): [1] bit_4.6.0 gtable_0.3.6 compiler_4.4.3 crayon_1.5.3 [5] tidyselect_1.2.1 parallel_4.4.3 scales_1.3.0 R6_2.6.1 [9] generics_0.1.3 munsell_0.5.1 pillar_1.10.2 tzdb_0.5.0 [13] rlang_1.1.5 stringi_1.8.7 bit64_4.6.0-1 timechange_0.3.0 [17] cli_3.6.4 withr_3.0.2 magrittr_2.0.3 grid_4.4.3 [21] vroom_1.6.5 hms_1.1.3 lifecycle_1.0.4 vctrs_0.6.5 [25] glue_1.8.0 colorspace_2.1-1 tools_4.4.3 pkgconfig_2.0.3