Received list of locations.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
Reading file.
[1] TRUE
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.4 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0

locale:
[1] C

time zone: Etc/UTC
tzcode source: system (glibc)

attached base packages:
[1] stats4    stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] methylKit_1.32.1     GenomicRanges_1.58.0 GenomeInfoDb_1.42.3 
 [4] IRanges_2.40.1       S4Vectors_0.44.0     BiocGenerics_0.52.0 
 [7] lubridate_1.9.4      forcats_1.0.0        stringr_1.5.1       
[10] dplyr_1.1.4          purrr_1.0.4          readr_2.1.5         
[13] tidyr_1.3.1          tibble_3.2.1         ggplot2_3.5.2       
[16] tidyverse_2.0.0     

loaded via a namespace (and not attached):
 [1] tidyselect_1.2.1            R.utils_2.13.0             
 [3] Biostrings_2.74.1           bitops_1.0-9               
 [5] RCurl_1.98-1.19             GenomicAlignments_1.42.0   
 [7] XML_3.99-0.18               timechange_0.3.0           
 [9] lifecycle_1.0.4             statmod_1.5.2              
[11] magrittr_2.0.3              compiler_4.4.3             
[13] rlang_1.1.5                 tools_4.4.3                
[15] yaml_2.3.10                 data.table_1.17.0          
[17] rtracklayer_1.66.0          S4Arrays_1.6.0             
[19] mclust_6.1.3                curl_6.2.2                 
[21] DelayedArray_0.32.0         plyr_1.8.9                 
[23] abind_1.4-8                 BiocParallel_1.40.2        
[25] withr_3.0.2                 numDeriv_2016.8-1.1        
[27] R.oo_1.27.1                 grid_4.4.3                 
[29] colorspace_2.1-1            scales_1.3.0               
[31] gtools_3.9.5                MASS_7.3-65                
[33] SummarizedExperiment_1.36.0 bbmle_1.0.25.1             
[35] cli_3.6.4                   mvtnorm_1.4-1              
[37] crayon_1.5.3                generics_0.1.3             
[39] httr_1.4.7                  reshape2_1.4.4             
[41] tzdb_0.5.0                  rjson_0.2.23               
[43] bdsmatrix_1.3-7             qvalue_2.38.0              
[45] zlibbioc_1.52.0             splines_4.4.3              
[47] parallel_4.4.3              XVector_0.46.0             
[49] restfulr_0.0.17             matrixStats_1.5.0          
[51] vctrs_0.6.5                 Matrix_1.7-3               
[53] jsonlite_2.0.0              hms_1.1.3                  
[55] fastseg_1.52.0              limma_3.62.2               
[57] glue_1.8.0                  emdbook_1.3.14             
[59] codetools_0.2-20            stringi_1.8.7              
[61] gtable_0.3.6                BiocIO_1.16.0              
[63] UCSC.utils_1.2.0            munsell_0.5.1              
[65] pillar_1.10.2               GenomeInfoDbData_1.2.13    
[67] R6_2.6.1                    lattice_0.22-7             
[69] Biobase_2.66.0              R.methodsS3_1.8.2          
[71] Rsamtools_2.22.0            Rcpp_1.0.14                
[73] SparseArray_1.6.2           coda_0.19-4.1              
[75] MatrixGenerics_1.18.1       pkgconfig_2.0.3