Module	Section	Sample Name	Source
Bismark	alignment	Pum1_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Pum1_PE_report.txt
Bismark	alignment	Pum2_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Pum2_PE_report.txt
Bismark	alignment	Pum3_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Pum3_PE_report.txt
Bismark	alignment	Pum4_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Pum4_PE_report.txt
Bismark	alignment	Pum5_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Pum5_PE_report.txt
Bismark	alignment	Qui1_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Qui1_PE_report.txt
Bismark	alignment	Qui2_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Qui2_PE_report.txt
Bismark	alignment	Qui3_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Qui3_PE_report.txt
Bismark	alignment	Qui4_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Qui4_PE_report.txt
Bismark	alignment	Qui5_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Qui5_PE_report.txt
Bismark	alignment	Rio1_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Rio1_PE_report.txt
Bismark	alignment	Rio2_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Rio2_PE_report.txt
Bismark	alignment	Rio3_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Rio3_PE_report.txt
Bismark	alignment	Rio4_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Rio4_PE_report.txt
Bismark	alignment	Rio5_PE_report	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/bismark/Rio5_PE_report.txt
Bismark	deduplication	Pum1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Pum1_pe.deduplication_report.txt
Bismark	deduplication	Pum2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Pum2_pe.deduplication_report.txt
Bismark	deduplication	Pum3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Pum3_pe.deduplication_report.txt
Bismark	deduplication	Pum4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Pum4_pe.deduplication_report.txt
Bismark	deduplication	Pum5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Pum5_pe.deduplication_report.txt
Bismark	deduplication	Qui1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Qui1_pe.deduplication_report.txt
Bismark	deduplication	Qui2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Qui2_pe.deduplication_report.txt
Bismark	deduplication	Qui3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Qui3_pe.deduplication_report.txt
Bismark	deduplication	Qui4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Qui4_pe.deduplication_report.txt
Bismark	deduplication	Qui5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Qui5_pe.deduplication_report.txt
Bismark	deduplication	Rio1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Rio1_pe.deduplication_report.txt
Bismark	deduplication	Rio2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Rio2_pe.deduplication_report.txt
Bismark	deduplication	Rio3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Rio3_pe.deduplication_report.txt
Bismark	deduplication	Rio4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Rio4_pe.deduplication_report.txt
Bismark	deduplication	Rio5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Rio5_pe.deduplication_report.txt
Bismark	methylation_extraction	Pum1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Pum1_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Pum2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Pum2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Pum3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Pum3_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Pum4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Pum4_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Pum5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Pum5_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Qui1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Qui1_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Qui2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Qui2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Qui3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Qui3_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Qui4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Qui4_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Qui5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Qui5_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Rio1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Rio1_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Rio2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Rio2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Rio3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Rio3_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Rio4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Rio4_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Rio5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Rio5_pe.deduplicated_splitting_report.txt
Bismark	m_bias	Pum1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Pum1_pe.deduplicated.M-bias.txt
Bismark	m_bias	Pum2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Pum2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Pum3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Pum3_pe.deduplicated.M-bias.txt
Bismark	m_bias	Pum4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Pum4_pe.deduplicated.M-bias.txt
Bismark	m_bias	Pum5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Pum5_pe.deduplicated.M-bias.txt
Bismark	m_bias	Qui1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Qui1_pe.deduplicated.M-bias.txt
Bismark	m_bias	Qui2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Qui2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Qui3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Qui3_pe.deduplicated.M-bias.txt
Bismark	m_bias	Qui4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Qui4_pe.deduplicated.M-bias.txt
Bismark	m_bias	Qui5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Qui5_pe.deduplicated.M-bias.txt
Bismark	m_bias	Rio1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Rio1_pe.deduplicated.M-bias.txt
Bismark	m_bias	Rio2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Rio2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Rio3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Rio3_pe.deduplicated.M-bias.txt
Bismark	m_bias	Rio4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Rio4_pe.deduplicated.M-bias.txt
Bismark	m_bias	Rio5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/methylation/Rio5_pe.deduplicated.M-bias.txt
Bismark	bam2nuc	Pum1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Pum1_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Pum2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Pum2_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Pum3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Pum3_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Pum4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Pum4_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Pum5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Pum5_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Qui1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Qui1_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Qui2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Qui2_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Qui3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Qui3_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Qui4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Qui4_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Qui5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Qui5_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Rio1_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Rio1_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Rio2_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Rio2_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Rio3_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Rio3_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Rio4_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Rio4_pe.deduplicated.nucleotide_stats.txt
Bismark	bam2nuc	Rio5_pe	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/dedup/Rio5_pe.deduplicated.nucleotide_stats.txt
fastp	all_sections	PUM1 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Pum1.fastp.json
fastp	all_sections	PUM2 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Pum2.fastp.json
fastp	all_sections	PUM3 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Pum3.fastp.json
fastp	all_sections	PUM4 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Pum4.fastp.json
fastp	all_sections	PUM5 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Pum5.fastp.json
fastp	all_sections	Qui1 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Qui1.fastp.json
fastp	all_sections	Qui2 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Qui2.fastp.json
fastp	all_sections	Qui3 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Qui3.fastp.json
fastp	all_sections	Qui4 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Qui4.fastp.json
fastp	all_sections	Qui5 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Qui5.fastp.json
fastp	all_sections	RP1 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Rio1.fastp.json
fastp	all_sections	RP2 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Rio2.fastp.json
fastp	all_sections	RP3 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Rio3.fastp.json
fastp	all_sections	RP4 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Rio4.fastp.json
fastp	all_sections	RP5 (paired)_R1	/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs/fastp/Rio5.fastp.json