File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
Pum1_pe.bam	38376265	21477991	4914963	11983311	2			948818982	22484422	92964364	971336	161021580	4305046	667072234
Pum2_pe.bam	36956713	20684439	4733212	11539062	2			913771245	21657394	89529478	935651	155082000	4145450	642421272
Pum3_pe.bam	32017056	17918749	4101413	9996894	2			791587296	18757275	77563134	810304	134340963	3592465	556523155
Pum4_pe.bam	30156298	16962777	3690349	9503172	1			753070840	17826488	74385559	824009	127827103	3655167	528552514
Pum5_pe.bam	22411610	12539975	2872597	6999038	1			553992854	13126282	54277842	567072	94014164	2516446	389491048
Qui1_pe.bam	38720614	22109417	4083326	12527871	0			995212631	23522222	100522151	1283779	168985307	5692971	695206201
Qui2_pe.bam	36627727	20881563	4060145	11686019	3			908365821	24045384	86907051	1137125	153351251	5126664	637798346
Qui3_pe.bam	41446330	23803175	4367286	13275869	2			1047457619	26326058	101463337	1243346	176620425	5639286	736165167
Qui4_pe.bam	34443887	19721997	3525341	11196549	0			872130334	21015648	87790656	988947	148863241	4378365	609093477
Qui5_pe.bam	33149345	18928762	3495122	10725461	0			852023413	20141665	86065434	1098706	144666332	4873801	595177475
Rio1_pe.bam	41519830	24269988	4258394	12991448	4			1068568056	26858866	105035830	1160832	181367885	5188825	748955818
Rio2_pe.bam	35781535	20539818	3792872	11448845	1			904231222	22323430	88628993	1000266	154020375	4438950	633819208
Rio3_pe.bam	32773197	18899959	3236569	10636669	1			812546697	21140644	78943618	1060119	138793392	4725922	567883002
Rio4_pe.bam	39972937	23177857	4129941	12665139	1			1021026796	25994008	100204693	1280085	173177972	5688786	714681252
Rio5_pe.bam	32773197	18899959	3236569	10636669	1			812546697	21140644	78943618	1060119	138793392	4725922	567883002