Rio5_pe.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.25.1
Bismark result file: paired-end (SAM format)
Ignoring first 5 bp of Read 2
Output specified: comprehensive
No overlapping methylation calls specified
Methylation in CHG and CHH context will be merged into "non-CpG context" output


Processed 17988679 lines in total
Total number of methylation call strings processed: 35977358

Final Cytosine Methylation Report
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Total number of C's analysed:	574283124

Total methylated C's in CpG context:	14921086
Total methylated C's in CHG context:	702564
Total methylated C's in CHH context:	3153715

Total C to T conversions in CpG context:	55813203
Total C to T conversions in CHG context:	98062065
Total C to T conversions in CHH context:	401630491

C methylated in CpG context:	21.1%
C methylated in non-CpG context:	0.8%