Rio1_pe.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.25.1
Bismark result file: paired-end (SAM format)
Ignoring first 5 bp of Read 2
Output specified: comprehensive
No overlapping methylation calls specified
Methylation in CHG and CHH context will be merged into "non-CpG context" output


Processed 22712055 lines in total
Total number of methylation call strings processed: 45424110

Final Cytosine Methylation Report
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Total number of C's analysed:	788031280

Total methylated C's in CpG context:	19766719
Total methylated C's in CHG context:	717410
Total methylated C's in CHH context:	3239835

Total C to T conversions in CpG context:	77664625
Total C to T conversions in CHG context:	133828701
Total C to T conversions in CHH context:	552813990

C methylated in CpG context:	20.3%
C methylated in non-CpG context:	0.6%