Qui3_pe.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.25.1
Bismark result file: paired-end (SAM format)
Ignoring first 5 bp of Read 2
Output specified: comprehensive
No overlapping methylation calls specified
Methylation in CHG and CHH context will be merged into "non-CpG context" output


Processed 22108613 lines in total
Total number of methylation call strings processed: 44217226

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	740428889

Total methylated C's in CpG context:	18544364
Total methylated C's in CHG context:	769395
Total methylated C's in CHH context:	3528064

Total C to T conversions in CpG context:	71950973
Total C to T conversions in CHG context:	124900286
Total C to T conversions in CHH context:	520735807

C methylated in CpG context:	20.5%
C methylated in non-CpG context:	0.7%