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"TCCCG":6570, "TCCGA":16439, "TCCGT":18587, "TCCGC":4620, "TCCGG":7672, "TCGAA":895369, "TCGAT":1279997, "TCGAC":67293, "TCGAG":641393, "TCGTA":1124225, "TCGTT":1732715, "TCGTC":121211, "TCGTG":651017, "TCGCA":7655, "TCGCT":10780, "TCGCC":4990, "TCGCG":177084, "TCGGA":652375, "TCGGT":822492, "TCGGC":45234, "TCGGG":439074, "TGAAA":20975360, "TGAAT":18424874, "TGAAC":488906, "TGAAG":7813696, "TGATA":20341162, "TGATT":24888576, "TGATC":430634, "TGATG":11093830, "TGACA":56231, "TGACT":95565, "TGACC":53354, "TGACG":464339, "TGAGA":7115841, "TGAGT":7950656, "TGAGC":100644, "TGAGG":3541176, "TGTAA":20653497, "TGTAT":31970017, "TGTAC":309707, "TGTAG":10475642, "TGTTA":25076980, "TGTTT":40473243, "TGTTC":564313, "TGTTG":14650623, "TGTCA":124507, "TGTCT":240792, "TGTCC":148071, "TGTCG":630666, "TGTGA":10561090, "TGTGT":18077581, "TGTGC":130859, "TGTGG":5524230, "TGCAA":60104, "TGCAT":81699, "TGCAC":6039, "TGCAG":31769, "TGCTA":55542, "TGCTT":117407, "TGCTC":47688, "TGCTG":33782, "TGCCA":5716, 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"CACCT":12552, "CACCC":22948, "CACCG":3303, "CACGA":8063, "CACGT":324305, "CACGC":3162, "CACGG":4508, "CAGAA":61785, "CAGAT":79295, "CAGAC":7372, "CAGAG":32360, "CAGTA":60618, "CAGTT":101074, "CAGTC":316209, "CAGTG":42097, "CAGCA":5221, "CAGCT":6263, "CAGCC":3817, "CAGCG":314164, "CAGGA":26778, "CAGGT":40720, "CAGGC":3074, "CAGGG":21317, "CTAAA":127011, "CTAAT":107729, "CTAAC":17165, "CTAAG":37652, "CTATA":142684, "CTATT":174528, "CTATC":23513, "CTATG":67664, "CTACA":12916, "CTACT":21309, "CTACC":10798, "CTACG":5880, "CTAGA":52803, "CTAGT":64900, "CTAGC":4182, "CTAGG":57381, "CTTAA":122392, "CTTAT":147540, "CTTAC":19751, "CTTAG":52011, "CTTTA":180005, "CTTTT":824660, "CTTTC":448172, "CTTTG":126617, "CTTCA":56749, "CTTCT":475275, "CTTCC":709584, "CTTCG":15764, "CTTGA":74805, "CTTGT":115593, "CTTGC":9920, "CTTGG":42755, "CTCAA":45736, "CTCAT":26347, "CTCAC":21818, "CTCAG":16652, "CTCTA":31181, "CTCTT":486559, "CTCTC":850690, "CTCTG":14677, "CTCCA":324971, "CTCCT":619617, "CTCCC":1011342, "CTCCG":5069, "CTCGA":11491, "CTCGT":15358, "CTCGC":3397, "CTCGG":5906, "CTGAA":371927, "CTGAT":60393, "CTGAC":8640, "CTGAG":23764, "CTGTA":75327, "CTGTT":113798, "CTGTC":16490, "CTGTG":44821, "CTGCA":5605, "CTGCT":11097, "CTGCC":3986, "CTGCG":2597, "CTGGA":29996, "CTGGT":54250, "CTGGC":3163, "CTGGG":280385, "CCAAA":56919, "CCAAT":18749, "CCAAC":26914, "CCAAG":10756, "CCATA":12542, "CCATT":25513, "CCATC":14757, "CCATG":6770, "CCACA":12252, "CCACT":23177, "CCACC":18963, "CCACG":4325, "CCAGA":27603, "CCAGT":314748, "CCAGC":3933, "CCAGG":6405, "CCTAA":18878, "CCTAT":18790, "CCTAC":11081, "CCTAG":8260, "CCTTA":19970, "CCTTT":332417, "CCTTC":480184, "CCTTG":14699, "CCTCA":31544, "CCTCT":577701, "CCTCC":854945, "CCTCG":3807, "CCTGA":9855, "CCTGT":13546, "CCTGC":3608, "CCTGG":5955, "CCCAA":41869, "CCCAT":18127, "CCCAC":23154, "CCCAG":29021, "CCCTA":15479, "CCCTT":282313, "CCCTC":600331, "CCCTG":6779, "CCCCA":49837, "CCCCT":355479, "CCCCC":627804, "CCCCG":4782, "CCCGA":5902, "CCCGT":5985, "CCCGC":2155, "CCCGG":2352, "CCGAA":11094, "CCGAT":11976, "CCGAC":2715, "CCGAG":4132, "CCGTA":6640, "CCGTT":16856, "CCGTC":8968, "CCGTG":5356, "CCGCA":1591, "CCGCT":2415, "CCGCC":1966, "CCGCG":1560, "CCGGA":5314, "CCGGT":6087, "CCGGC":1475, "CCGGG":3590, "CGAAA":742803, "CGAAT":710863, "CGAAC":38626, "CGAAG":328760, "CGATA":945520, "CGATT":1105739, "CGATC":92190, "CGATG":404680, "CGACA":5551, "CGACT":8539, "CGACC":5078, "CGACG":138242, "CGAGA":444747, "CGAGT":517424, "CGAGC":30224, "CGAGG":229158, "CGTAA":827200, "CGTAT":1089177, "CGTAC":78341, "CGTAG":386384, "CGTTA":1164436, "CGTTT":1706273, "CGTTC":121491, "CGTTG":466724, "CGTCA":13578, "CGTCT":355202, "CGTCC":13876, "CGTCG":195330, "CGTGA":368886, "CGTGT":650282, "CGTGC":31260, "CGTGG":216105, "CGCAA":5430, "CGCAT":6546, "CGCAC":2663, "CGCAG":2793, "CGCTA":5157, "CGCTT":10588, "CGCTC":5479, "CGCTG":2961, "CGCCA":1447, "CGCCT":4294, "CGCCC":4671, "CGCCG":1198, "CGCGA":111562, "CGCGT":151016, "CGCGC":16484, "CGCGG":77686, "CGGAA":442071, "CGGAT":593738, "CGGAC":63088, "CGGAG":232380, "CGGTA":510054, "CGGTT":712564, "CGGTC":62671, "CGGTG":268718, "CGGCA":313554, "CGGCT":14471, "CGGCC":3597, "CGGCG":78127, "CGGGA":228166, "CGGGT":341701, "CGGGC":27417, "CGGGG":215263, "GAAAA":18197350, "GAAAT":19773571, "GAAAC":195186, "GAAAG":7086825, "GAATA":14173162, "GAATT":18209124, "GAATC":279676, "GAATG":7164250, "GAACA":47603, "GAACT":374844, "GAACC":30196, "GAACG":285255, "GAAGA":6773545, "GAAGT":7600492, "GAAGC":84362, "GAAGG":2951891, "GATAA":14559019, "GATAT":21333830, "GATAC":216985, "GATAG":8124900, "GATTA":14995477, "GATTT":26005348, "GATTC":467527, "GATTG":9308748, "GATCA":60788, "GATCT":202164, "GATCC":191520, "GATCG":518405, "GATGA":7468064, "GATGT":10779798, "GATGC":91480, "GATGG":3949091, "GACAA":42668, "GACAT":52888, "GACAC":5042, "GACAG":24520, "GACTA":33385, "GACTT":82884, "GACTC":48067, "GACTG":21426, "GACCA":8209, "GACCT":36353, "GACCC":50569, "GACCG":2880, "GACGA":370399, "GACGT":529148, "GACGC":20278, "GACGG":281364, "GAGAA":6786975, "GAGAT":7283559, "GAGAC":92435, "GAGAG":9052154, "GAGTA":5982728, "GAGTT":8265910, "GAGTC":126733, "GAGTG":4984417, "GAGCA":174901, "GAGCT":32880, "GAGCC":18702, "GAGCG":197839, "GAGGA":3496238, "GAGGT":3871309, "GAGGC":48516, "GAGGG":2013888, "GTAAA":16924510, "GTAAT":17482297, "GTAAC":190823, "GTAAG":6497548, "GTATA":22389614, "GTATT":26222230, "GTATC":414175, "GTATG":10779968, "GTACA":62844, "GTACT":72936, "GTACC":30033, "GTACG":513304, "GTAGA":7858654, "GTAGT":9327265, "GTAGC":101662, "GTAGG":4012146, "GTTAA":16882142, "GTTAT":25323019, "GTTAC":292789, "GTTAG":8621862, "GTTTA":23701960, "GTTTT":41078288, "GTTTC":672617, "GTTTG":14719479, "GTTCA":115783, "GTTCT":253910, "GTTCC":160037, "GTTCG":779342, "GTTGA":9929417, "GTTGT":13961546, "GTTGC":133265, "GTTGG":4978659, "GTCAA":87301, "GTCAT":107808, "GTCAC":318315, "GTCAG":39612, "GTCTA":78168, "GTCTT":222471, "GTCTC":149196, "GTCTG":352945, "GTCCA":8564, "GTCCT":132433, "GTCCC":170805, "GTCCG":5989, "GTCGA":503895, "GTCGT":687824, "GTCGC":36600, "GTCGG":383210, "GTGAA":8327744, "GTGAT":10942752, "GTGAC":146352, "GTGAG":3993240, "GTGTA":12087790, "GTGTT":14678327, "GTGTC":244392, "GTGTG":8690319, "GTGCA":31862, "GTGCT":45850, "GTGCC":20060, "GTGCG":207514, "GTGGA":4098542, "GTGGT":5624161, "GTGGC":101975, "GTGGG":2603066, "GCAAA":359889, "GCAAT":50555, "GCAAC":6024, "GCAAG":19065, "GCATA":52396, "GCATT":72643, "GCATC":6971, "GCATG":30804, "GCACA":323374, "GCACT":6051, "GCACC":5141, "GCACG":2983, "GCAGA":23076, "GCAGT":30811, "GCAGC":3536, "GCAGG":13381, "GCTAA":35114, "GCTAT":53244, "GCTAC":4516, "GCTAG":18186, "GCTTA":41798, "GCTTT":129825, "GCTTC":43850, "GCTTG":28417, "GCTCA":4656, "GCTCT":47581, "GCTCC":59742, "GCTCG":3662, "GCTGA":20016, "GCTGT":31145, "GCTGC":2808, "GCTGG":11233, "GCCAA":4715, "GCCAT":3767, "GCCAC":3161, "GCCAG":2245, "GCCTA":3586, "GCCTT":34811, "GCCTC":55226, "GCCTG":3130, "GCCCA":3354, "GCCCT":44007, "GCCCC":67118, "GCCCG":1095, "GCCGA":2214, "GCCGT":6570, "GCCGC":816, "GCCGG":2601, "GCGAA":297578, "GCGAT":455664, "GCGAC":22273, "GCGAG":237365, "GCGTA":423794, "GCGTT":589242, "GCGTC":58785, "GCGTG":216150, "GCGCA":3420, "GCGCT":4509, "GCGCC":2118, "GCGCG":79403, "GCGGA":198849, "GCGGT":277570, "GCGGC":336001, "GCGGG":163533, "GGAAA":7979499, "GGAAT":7116147, "GGAAC":76968, "GGAAG":3477215, "GGATA":7167109, "GGATT":8885507, "GGATC":185968, "GGATG":3831351, "GGACA":22595, "GGACT":37467, "GGACC":22044, "GGACG":230610, "GGAGA":3666031, "GGAGT":3620101, "GGAGC":44435, "GGAGG":2107869, "GGTAA":6968118, "GGTAT":9801399, "GGTAC":116470, "GGTAG":3834948, "GGTTA":9882446, "GGTTT":14039976, "GGTTC":279423, "GGTTG":5150615, "GGTCA":49639, "GGTCT":94960, "GGTCC":76351, "GGTCG":356954, "GGTGA":4267489, "GGTGT":6022710, "GGTGC":53266, "GGTGG":3064848, "GGCAA":331581, "GGCAT":28279, "GGCAC":2735, "GGCAG":15431, "GGCTA":19696, "GGCTT":59296, "GGCTC":29251, "GGCTG":12033, "GGCCA":2727, "GGCCT":26954, "GGCCC":32118, "GGCCG":3569, "GGCGA":207082, "GGCGT":301191, "GGCGC":20188, "GGCGG":210592, "GGGAA":3551008, "GGGAT":4148417, "GGGAC":63417, "GGGAG":2017956, "GGGTA":3952111, "GGGTT":6406777, "GGGTC":143194, "GGGTG":2727509, "GGGCA":17867, "GGGCT":28611, "GGGCC":19079, "GGGCG":229274, "GGGGA":2298399, "GGGGT":3659210, "GGGGC":140148, "GGGGG":3267538 }, "overrepresented_sequences": { } }, "read2_after_filtering": { "total_reads": 32773197, "total_bases": 4518031814, "q20_bases": 4475741533, "q30_bases": 4347639525, "q40_bases": 4347639525, "total_cycles": 141, "quality_curves": { 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"CGCGA":174700, "CGCGT":98461, "CGCGC":76282, "CGCGG":894, "CGGAA":27045, "CGGAT":2633, "CGGAC":1959, "CGGAG":1938, "CGGTA":2466, "CGGTT":10997, "CGGTC":1910, "CGGTG":220030, "CGGCA":1192, "CGGCT":1202, "CGGCC":1129, "CGGCG":1048, "CGGGA":6840, "CGGGT":763, "CGGGC":612, "CGGGG":2799, "GAAAA":1965864, "GAAAT":1114542, "GAAAC":572446, "GAAAG":530618, "GAATA":987864, "GAATT":765477, "GAATC":497909, "GAATG":10461, "GAACA":527294, "GAACT":339609, "GAACC":259030, "GAACG":113793, "GAAGA":519222, "GAAGT":48756, "GAAGC":34539, "GAAGG":210303, "GATAA":1052133, "GATAT":795975, "GATAC":439823, "GATAG":10121, "GATTA":688883, "GATTT":614184, "GATTC":311815, "GATTG":3240, "GATCA":513388, "GATCT":603227, "GATCC":223042, "GATCG":104555, "GATGA":11074, "GATGT":309435, "GATGC":2042, "GATGG":8199, "GACAA":512878, "GACAT":326653, "GACAC":196927, "GACAG":2789, "GACTA":341401, "GACTT":232699, "GACTC":127102, "GACTG":1797, "GACCA":244507, "GACCT":173489, "GACCC":133528, "GACCG":61038, "GACGA":105340, "GACGT":73277, "GACGC":41611, "GACGG":1560, "GAGAA":518980, "GAGAT":304859, "GAGAC":121266, "GAGAG":317494, "GAGTA":58748, "GAGTT":44561, "GAGTC":41038, "GAGTG":306593, "GAGCA":39931, "GAGCT":33040, "GAGCC":28872, "GAGCG":146328, "GAGGA":375313, "GAGGT":40700, "GAGGC":28425, "GAGGG":189478, "GTAAA":743351, "GTAAT":446982, "GTAAC":273968, "GTAAG":7132, "GTATA":520127, "GTATT":406978, "GTATC":358180, "GTATG":3438, "GTACA":289900, "GTACT":169831, "GTACC":119182, "GTACG":74296, "GTAGA":151464, "GTAGT":282858, "GTAGC":1575, "GTAGG":306905, "GTTAA":406748, "GTTAT":354832, "GTTAC":180999, "GTTAG":3727, "GTTTA":337434, "GTTTT":327281, "GTTTC":182635, "GTTTG":5287, "GTTCA":184913, "GTTCT":129264, "GTTCC":89233, "GTTCG":32331, "GTTGA":3130, "GTTGT":27102, "GTTGC":36389, "GTTGG":3231, "GTCAA":306397, "GTCAT":251397, "GTCAC":157954, "GTCAG":1982, "GTCTA":217768, "GTCTT":145408, "GTCTC":139897, "GTCTG":2194, "GTCCA":113175, "GTCCT":89105, "GTCCC":74929, "GTCCG":57058, "GTCGA":189437, "GTCGT":392466, "GTCGC":264317, "GTCGG":7324, "GTGAA":5964, "GTGAT":308273, "GTGAC":2826, "GTGAG":5379, "GTGTA":464536, "GTGTT":9001, "GTGTC":153910, "GTGTG":622372, "GTGCA":1802, "GTGCT":8553, "GTGCC":1437, "GTGCG":949, "GTGGA":5803, "GTGGT":290417, "GTGGC":1439, "GTGGG":11814, "GCAAA":337310, "GCAAT":213683, "GCAAC":124204, "GCAAG":2567, "GCATA":212772, "GCATT":156348, "GCATC":87571, "GCATG":1713, "GCACA":119228, "GCACT":86409, "GCACC":49344, "GCACG":30418, "GCAGA":3021, "GCAGT":2046, "GCAGC":1380, "GCAGG":2051, "GCTAA":238839, "GCTAT":216194, "GCTAC":102704, "GCTAG":992, "GCTTA":149079, "GCTTT":156763, "GCTTC":83998, "GCTTG":1306, "GCTCA":106752, "GCTCT":97463, "GCTCC":47092, "GCTCG":29985, "GCTGA":1777, "GCTGT":1815, "GCTGC":1081, "GCTGG":1274, "GCCAA":149586, "GCCAT":231077, "GCCAC":72047, "GCCAG":1485, "GCCTA":97770, "GCCTT":70915, "GCCTC":46175, "GCCTG":1455, "GCCCA":75786, "GCCCT":62721, "GCCCC":59226, "GCCCG":27504, "GCCGA":46232, "GCCGT":197100, "GCCGC":16830, "GCCGG":840, "GCGAA":88338, "GCGAT":63111, "GCGAC":35280, "GCGAG":1621, "GCGTA":52593, "GCGTT":33836, "GCGTC":328736, "GCGTG":1911, "GCGCA":27341, "GCGCT":21164, "GCGCC":20070, "GCGCG":15217, "GCGGA":1943, "GCGGT":857, "GCGGC":711, "GCGGG":2065, "GGAAA":725730, "GGAAT":254355, "GGAAC":109592, "GGAAG":277517, "GGATA":253217, "GGATT":199080, "GGATC":165165, "GGATG":7868, "GGACA":106082, "GGACT":69025, "GGACC":60884, "GGACG":6282, "GGAGA":358878, "GGAGT":40131, "GGAGC":28010, "GGAGG":204424, "GGTAA":49865, "GGTAT":29253, "GGTAC":23430, "GGTAG":4829, "GGTTA":41242, "GGTTT":29837, "GGTTC":21102, "GGTTG":44747, "GGTCA":49651, "GGTCT":25235, "GGTCC":20902, "GGTCG":235969, "GGTGA":4337, "GGTGT":7118, "GGTGC":1330, "GGTGG":228731, "GGCAA":34849, "GGCAT":20186, "GGCAC":14428, "GGCAG":2004, "GGCTA":31381, "GGCTT":16972, "GGCTC":14465, "GGCTG":1356, "GGCCA":25742, "GGCCT":11797, "GGCCC":15914, "GGCCG":2456, "GGCGA":3112, "GGCGT":2113, "GGCGC":1666, "GGCGG":2072, "GGGAA":561643, "GGGAT":148881, "GGGAC":55098, "GGGAG":195583, "GGGTA":27169, "GGGTT":23724, "GGGTC":19904, "GGGTG":10696, "GGGCA":17149, "GGGCT":15169, "GGGCC":12900, "GGGCG":3019, "GGGGA":211745, "GGGGT":25577, "GGGGC":11794, "GGGGG":907026 }, "overrepresented_sequences": { } }, "command": "fastp -i /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/RP3 (paired)_R1.fastq.gz -I /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/RP3 (paired)_R2.fastq.gz -o output/13-wgbs/trimmed/Rio3_R1.fq.gz -O output/13-wgbs/trimmed/Rio3_R2.fq.gz --detect_adapter_for_pe --trim_poly_g --trim_front1 10 --trim_front2 10 --length_required 50 --thread 16 --json output/13-wgbs/fastp/Rio3.fastp.json --html output/13-wgbs/fastp/Rio3.fastp.html " }