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"CACTC":37551, "CACTG":263234, "CACCA":39739, "CACCT":25877, "CACCC":36642, "CACCG":6419, "CACGA":11973, "CACGT":260958, "CACGC":6221, "CACGG":7855, "CAGAA":87362, "CAGAT":95689, "CAGAC":16430, "CAGAG":49230, "CAGTA":77631, "CAGTT":130583, "CAGTC":258771, "CAGTG":60578, "CAGCA":18571, "CAGCT":18997, "CAGCC":17039, "CAGCG":5650, "CAGGA":44244, "CAGGT":56469, "CAGGC":15141, "CAGGG":34315, "CTAAA":167915, "CTAAT":142710, "CTAAC":26931, "CTAAG":52195, "CTATA":181336, "CTATT":227020, "CTATC":34514, "CTATG":88858, "CTACA":23847, "CTACT":35472, "CTACC":18376, "CTACG":8548, "CTAGA":68687, "CTAGT":96263, "CTAGC":9507, "CTAGG":48958, "CTTAA":164430, "CTTAT":189792, "CTTAC":30936, "CTTAG":69559, "CTTTA":249516, "CTTTT":1015504, "CTTTC":453697, "CTTTG":174909, "CTTCA":87558, "CTTCT":550416, "CTTCC":638964, "CTTCG":21298, "CTTGA":105745, "CTTGT":150004, "CTTGC":19834, "CTTGG":63781, "CTCAA":72621, "CTCAT":44887, "CTCAC":39270, "CTCAG":33408, "CTCTA":47677, "CTCTT":469744, "CTCTC":754408, "CTCTG":33796, "CTCCA":272473, "CTCCT":556765, "CTCCC":857768, "CTCCG":8379, "CTCGA":16050, "CTCGT":20846, "CTCGC":6036, "CTCGG":10165, "CTGAA":330911, "CTGAT":81671, "CTGAC":17994, "CTGAG":40974, "CTGTA":99873, "CTGTT":158540, "CTGTC":271845, "CTGTG":65090, "CTGCA":19563, "CTGCT":49042, "CTGCC":17105, "CTGCG":5264, "CTGGA":47152, "CTGGT":163604, "CTGGC":13192, "CTGGG":142897, "CCAAA":86139, "CCAAT":31633, "CCAAC":41017, "CCAAG":22062, "CCATA":22422, "CCATT":54010, "CCATC":31997, "CCATG":18536, "CCACA":24184, "CCACT":42312, "CCACC":35510, "CCACG":8066, "CCAGA":35827, "CCAGT":257706, "CCAGC":17200, "CCAGG":19868, "CCTAA":31111, "CCTAT":28917, "CCTAC":18769, "CCTAG":14157, "CCTTA":33183, "CCTTT":357766, "CCTTC":442579, "CCTTG":28446, "CCTCA":52229, "CCTCT":518737, "CCTCC":736002, "CCTCG":7442, "CCTGA":23487, "CCTGT":28091, "CCTGC":14870, "CCTGG":20712, "CCCAA":61551, "CCCAT":31102, "CCCAC":38299, "CCCAG":40690, "CCCTA":23045, "CCCTT":274543, "CCCTC":521614, "CCCTG":19222, "CCCCA":63192, "CCCCT":317532, "CCCCC":535030, "CCCCG":8305, "CCCGA":8698, "CCCGT":9811, "CCCGC":5102, "CCCGG":6275, "CCGAA":14509, "CCGAT":15648, "CCGAC":5107, "CCGAG":7689, "CCGTA":9121, "CCGTT":31850, "CCGTC":46220, "CCGTG":9150, "CCGCA":4067, "CCGCT":5549, "CCGCC":6034, "CCGCG":3041, "CCGGA":7516, "CCGGT":9237, "CCGGC":5434, "CCGGG":7457, "CGAAA":909136, "CGAAT":888932, "CGAAC":48331, "CGAAG":412420, "CGATA":1186273, "CGATT":1399306, "CGATC":113249, "CGATG":504243, "CGACA":7925, "CGACT":10795, "CGACC":6261, "CGACG":178197, "CGAGA":554657, "CGAGT":654916, "CGAGC":40862, "CGAGG":291431, "CGTAA":1032350, "CGTAT":1378099, "CGTAC":99722, "CGTAG":490269, "CGTTA":1489027, "CGTTT":2181454, "CGTTC":161159, "CGTTG":595543, "CGTCA":18397, "CGTCT":367937, "CGTCC":17143, "CGTCG":255250, "CGTGA":698178, "CGTGT":802024, "CGTGC":42715, "CGTGG":275483, "CGCAA":7752, "CGCAT":9221, "CGCAC":4678, "CGCAG":5305, "CGCTA":7131, "CGCTT":15116, "CGCTC":8022, "CGCTG":5654, "CGCCA":4617, "CGCCT":7853, "CGCCC":7646, "CGCCG":3215, "CGCGA":142926, "CGCGT":195810, "CGCGC":22649, "CGCGG":101283, "CGGAA":543725, "CGGAT":753575, "CGGAC":81722, "CGGAG":290265, "CGGTA":645815, "CGGTT":890002, "CGGTC":79327, "CGGTG":338829, "CGGCA":5044, "CGGCT":15206, "CGGCC":5890, "CGGCG":103572, "CGGGA":290526, "CGGGT":424273, "CGGGC":37271, "CGGGG":278655, "GAAAA":22473922, "GAAAT":24838618, "GAAAC":242106, "GAAAG":8790824, "GAATA":17863715, "GAATT":23330373, "GAATC":550272, "GAATG":9008384, "GAACA":63658, "GAACT":323583, "GAACC":32841, "GAACG":356106, "GAAGA":8462522, "GAAGT":9647689, "GAAGC":107911, "GAAGG":3786738, "GATAA":18367088, "GATAT":27280158, "GATAC":270682, "GATAG":10120195, "GATTA":19301124, "GATTT":33788997, "GATTC":528904, "GATTG":11918932, "GATCA":77830, "GATCT":184199, "GATCC":137763, "GATCG":653250, "GATGA":9472312, "GATGT":13744502, "GATGC":119874, "GATGG":5068133, "GACAA":57178, "GACAT":68288, "GACAC":11890, "GACAG":36670, "GACTA":44747, "GACTT":98230, "GACTC":42545, "GACTG":31543, "GACCA":16922, "GACCT":32695, "GACCC":40280, "GACCG":4562, "GACGA":461894, "GACGT":671723, "GACGC":27143, "GACGG":354427, "GAGAA":8355472, "GAGAT":9227956, "GAGAC":118684, "GAGAG":10176776, "GAGTA":7538064, "GAGTT":10662185, "GAGTC":151659, "GAGTG":6042255, "GAGCA":142170, "GAGCT":41230, "GAGCC":23262, "GAGCG":249702, "GAGGA":4405051, "GAGGT":5034263, "GAGGC":67779, "GAGGG":2567338, "GTAAA":21288476, "GTAAT":22194180, "GTAAC":232112, "GTAAG":8157298, "GTATA":28367920, "GTATT":34027892, "GTATC":481183, "GTATG":13900606, "GTACA":77102, "GTACT":84976, "GTACC":31408, "GTACG":647401, "GTAGA":9874341, "GTAGT":11892932, "GTAGC":127514, "GTAGG":5169787, "GTTAA":21735822, "GTTAT":32721524, "GTTAC":364357, "GTTAG":11067199, "GTTTA":30703789, "GTTTT":53389362, "GTTTC":822619, "GTTTG":19038885, "GTTCA":149803, "GTTCT":286058, "GTTCC":155759, "GTTCG":1008737, "GTTGA":12810859, "GTTGT":18014770, "GTTGC":168221, "GTTGG":6451238, "GTCAA":111364, "GTCAT":136892, "GTCAC":258929, "GTCAG":53310, "GTCTA":100220, "GTCTT":327624, "GTCTC":144286, "GTCTG":301164, "GTCCA":16296, "GTCCT":129552, "GTCCC":151877, "GTCCG":8609, "GTCGA":641317, "GTCGT":1154120, "GTCGC":48519, "GTCGG":483310, "GTGAA":10716690, "GTGAT":13808907, "GTGAC":180615, "GTGAG":5005806, "GTGTA":15215394, "GTGTT":18692089, "GTGTC":314944, "GTGTG":10783715, "GTGCA":45218, "GTGCT":58846, "GTGCC":48642, "GTGCG":262761, "GTGGA":5244979, "GTGGT":7283519, "GTGGC":123911, "GTGGG":3347633, "GCAAA":68107, "GCAAT":65378, "GCAAC":12667, "GCAAG":29153, "GCATA":66262, "GCATT":94571, "GCATC":15016, "GCATG":42349, "GCACA":262614, "GCACT":14485, "GCACC":11121, "GCACG":5355, "GCAGA":36053, "GCAGT":44101, "GCAGC":11409, "GCAGG":23809, "GCTAA":48892, "GCTAT":69445, "GCTAC":10027, "GCTAG":25802, "GCTTA":55954, "GCTTT":174905, "GCTTC":51780, "GCTTG":44107, "GCTCA":14991, "GCTCT":52779, "GCTCC":58447, "GCTCG":5662, "GCTGA":32366, "GCTGT":44518, "GCTGC":10834, "GCTGG":25710, "GCCAA":13528, "GCCAT":17755, "GCCAC":11935, "GCCAG":11988, "GCCTA":9374, "GCCTT":43014, "GCCTC":59365, "GCCTG":15169, "GCCCA":12857, "GCCCT":45847, "GCCCC":62798, "GCCCG":3892, "GCCGA":5063, "GCCGT":50132, "GCCGC":3390, "GCCGG":6412, "GCGAA":368289, "GCGAT":572708, "GCGAC":29355, "GCGAG":296154, "GCGTA":530897, "GCGTT":732619, "GCGTC":84815, "GCGTG":264238, "GCGCA":5651, "GCGCT":6771, "GCGCC":4725, "GCGCG":106129, "GCGGA":249762, "GCGGT":329215, "GCGGC":28196, "GCGGG":197488, "GGAAA":9956208, "GGAAT":9102786, "GGAAC":97736, "GGAAG":4404088, "GGATA":9201609, "GGATT":11625454, "GGATC":199731, "GGATG":4952456, "GGACA":32938, "GGACT":43810, "GGACC":20400, "GGACG":295728, "GGAGA":4553196, "GGAGT":4614886, "GGAGC":59288, "GGAGG":2710347, "GGTAA":8892432, "GGTAT":12748452, "GGTAC":147516, "GGTAG":4938349, "GGTTA":12916239, "GGTTT":18249432, "GGTTC":342680, "GGTTG":6636900, "GGTCA":65162, "GGTCT":101024, "GGTCC":68557, "GGTCG":449163, "GGTGA":5478185, "GGTGT":7771730, "GGTGC":73856, "GGTGG":3944824, "GGCAA":31195, "GGCAT":40262, "GGCAC":9172, "GGCAG":25495, "GGCTA":28789, "GGCTT":63912, "GGCTC":31625, "GGCTG":25247, "GGCCA":12429, "GGCCT":30228, "GGCCC":30709, "GGCCG":9353, "GGCGA":260271, "GGCGT":359837, "GGCGC":29992, "GGCGG":227161, "GGGAA":4515776, "GGGAT":5426195, "GGGAC":81545, "GGGAG":2544182, "GGGTA":5138310, "GGGTT":8301127, "GGGTC":160815, "GGGTG":3438492, "GGGCA":24582, "GGGCT":32852, "GGGCC":22025, "GGGCG":221888, "GGGGA":2954498, "GGGGT":4661424, "GGGGC":95990, "GGGGG":3378881 }, "overrepresented_sequences": { } }, "read2_after_filtering": { "total_reads": 41519830, "total_bases": 5764308050, "q20_bases": 5713048128, "q30_bases": 5550154721, "q40_bases": 5550154721, "total_cycles": 141, "quality_curves": { 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"CCCTC":2578029, "CCCTG":22698, "CCCCA":4162241, "CCCCT":3139559, "CCCCC":5536658, "CCCCG":263988, "CCCGA":539146, "CCCGT":257771, "CCCGC":194454, "CCCGG":5192, "CCGAA":1215639, "CCGAT":833177, "CCGAC":482611, "CCGAG":5458, "CCGTA":882047, "CCGTT":419556, "CCGTC":346632, "CCGTG":5340, "CCGCA":242472, "CCGCT":231555, "CCGCC":217177, "CCGCG":99607, "CCGGA":4717, "CCGGT":3286, "CCGGC":3545, "CCGGG":4157, "CGAAA":2794884, "CGAAT":1573737, "CGAAC":1003673, "CGAAG":9180, "CGATA":1664002, "CGATT":1053913, "CGATC":762380, "CGATG":7189, "CGACA":760798, "CGACT":535016, "CGACC":435861, "CGACG":254491, "CGAGA":7995, "CGAGT":4985, "CGAGC":3428, "CGAGG":4798, "CGTAA":1446390, "CGTAT":1338513, "CGTAC":638110, "CGTAG":4506, "CGTTA":887052, "CGTTT":778038, "CGTTC":354851, "CGTTG":5490, "CGTCA":573163, "CGTCT":450706, "CGTCC":284310, "CGTCG":410583, "CGTGA":6592, "CGTGT":466993, "CGTGC":4057, "CGTGG":5391, "CGCAA":616120, "CGCAT":412996, "CGCAC":258511, "CGCAG":4530, "CGCTA":524569, "CGCTT":368646, "CGCTC":242608, "CGCTG":3978, "CGCCA":318104, "CGCCT":199374, "CGCCC":195547, "CGCCG":329294, "CGCGA":226803, "CGCGT":124144, "CGCGC":101948, "CGCGG":2320, "CGGAA":34739, "CGGAT":4616, "CGGAC":3446, "CGGAG":4723, "CGGTA":3612, "CGGTT":4311, "CGGTC":3222, "CGGTG":238105, "CGGCA":3523, "CGGCT":3556, "CGGCC":4022, "CGGCG":2756, "CGGGA":8220, "CGGGT":3037, "CGGGC":3170, "CGGGG":5712, "GAAAA":2636242, "GAAAT":1474116, "GAAAC":771596, "GAAAG":596208, "GAATA":1330060, "GAATT":999043, "GAATC":622263, "GAATG":35819, "GAACA":721493, "GAACT":454877, "GAACC":346807, "GAACG":378769, "GAAGA":732659, "GAAGT":72487, "GAAGC":56925, "GAAGG":340723, "GATAA":1385123, "GATAT":1046359, "GATAC":577272, "GATAG":23967, "GATTA":867762, "GATTT":793276, "GATTC":396505, "GATTG":10442, "GATCA":592916, "GATCT":704196, "GATCC":261805, "GATCG":130247, "GATGA":29520, "GATGT":13153, "GATGC":8406, "GATGG":24634, "GACAA":678227, "GACAT":430381, "GACAC":259501, "GACAG":13728, "GACTA":448756, "GACTT":307486, "GACTC":170832, "GACTG":9027, "GACCA":319705, "GACCT":197386, "GACCC":171133, "GACCG":79070, "GACGA":139167, "GACGT":92117, "GACGC":58035, "GACGG":4174, "GAGAA":797854, "GAGAT":425379, "GAGAC":180842, "GAGAG":507824, "GAGTA":88826, "GAGTT":67488, "GAGTC":50380, "GAGTG":248888, "GAGCA":67470, "GAGCT":54476, "GAGCC":44737, "GAGCG":106741, "GAGGA":589257, "GAGGT":62972, "GAGGC":52946, "GAGGG":308747, "GTAAA":930637, "GTAAT":563450, "GTAAC":350038, "GTAAG":13678, "GTATA":653294, "GTATT":505051, "GTATC":491038, "GTATG":9706, "GTACA":369623, "GTACT":218687, "GTACC":148290, "GTACG":94892, "GTAGA":234321, "GTAGT":10201, "GTAGC":6193, "GTAGG":244917, "GTTAA":505409, "GTTAT":432005, "GTTAC":224532, "GTTAG":7658, "GTTTA":420556, "GTTTT":410326, "GTTTC":225003, "GTTTG":14534, "GTTCA":233108, "GTTCT":163264, "GTTCC":108661, "GTTCG":41218, "GTTGA":11466, "GTTGT":13567, "GTTGC":10128, "GTTGG":10483, "GTCAA":343683, "GTCAT":300136, "GTCAC":189263, "GTCAG":9596, "GTCTA":271774, "GTCTT":421141, "GTCTC":135278, "GTCTG":9889, "GTCCA":139605, "GTCCT":110562, "GTCCC":90328, "GTCCG":73444, "GTCGA":96234, "GTCGT":317164, "GTCGC":262991, "GTCGG":6724, "GTGAA":18957, "GTGAT":13242, "GTGAC":8332, "GTGAG":17825, "GTGTA":453240, "GTGTT":16259, "GTGTC":265767, "GTGTG":21188, "GTGCA":9912, "GTGCT":18920, "GTGCC":7682, "GTGCG":2856, "GTGGA":17965, "GTGGT":251099, "GTGGC":9913, "GTGGG":23569, "GCAAA":446367, "GCAAT":276667, "GCAAC":163755, "GCAAG":10852, "GCATA":278644, "GCATT":204692, "GCATC":115751, "GCATG":10225, "GCACA":157776, "GCACT":115611, "GCACC":69678, "GCACG":42551, "GCAGA":14802, "GCAGT":12223, "GCAGC":9252, "GCAGG":12947, "GCTAA":314155, "GCTAT":274072, "GCTAC":134592, "GCTAG":5459, "GCTTA":194909, "GCTTT":202533, "GCTTC":112501, "GCTTG":8638, "GCTCA":143387, "GCTCT":129607, "GCTCC":66004, "GCTCG":40545, "GCTGA":12346, "GCTGT":9598, "GCTGC":8880, "GCTGG":13835, "GCCAA":194614, "GCCAT":181018, "GCCAC":97635, "GCCAG":10928, "GCCTA":129524, "GCCTT":95998, "GCCTC":68232, "GCCTG":13545, "GCCCA":105106, "GCCCT":78348, "GCCCC":80313, "GCCCG":37536, "GCCGA":62732, "GCCGT":260448, "GCCGC":23559, "GCCGG":3473, "GCGAA":115631, "GCGAT":82145, "GCGAC":47937, "GCGAG":3890, "GCGTA":67119, "GCGTT":42942, "GCGTC":265196, "GCGTG":4551, "GCGCA":36670, "GCGCT":30054, "GCGCC":29578, "GCGCG":21114, "GCGGA":4406, "GCGGT":2779, "GCGGC":2998, "GCGGG":5234, "GGAAA":881885, "GGAAT":376433, "GGAAC":392656, "GGAAG":406052, "GGATA":373973, "GGATT":278685, "GGATC":193598, "GGATG":23083, "GGACA":158728, "GGACT":105687, "GGACC":85753, "GGACG":10347, "GGAGA":560559, "GGAGT":62747, "GGAGC":47217, "GGAGG":337731, "GGTAA":75031, "GGTAT":47654, "GGTAC":36848, "GGTAG":12352, "GGTTA":53398, "GGTTT":45509, "GGTTC":30039, "GGTTG":13192, "GGTCA":52715, "GGTCT":25711, "GGTCC":23543, "GGTCG":238381, "GGTGA":16315, "GGTGT":11945, "GGTGC":7422, "GGTGG":258378, "GGCAA":58784, "GGCAT":38061, "GGCAC":26724, "GGCAG":14085, "GGCTA":48383, "GGCTT":32067, "GGCTC":26449, "GGCTG":13898, "GGCCA":41433, "GGCCT":24122, "GGCCC":24599, "GGCCG":5591, "GGCGA":6116, "GGCGT":4753, "GGCGC":4367, "GGCGG":6019, "GGGAA":637957, "GGGAT":215229, "GGGAC":85932, "GGGAG":318503, "GGGTA":44514, "GGGTT":36331, "GGGTC":26564, "GGGTG":21937, "GGGCA":33768, "GGGCT":28921, "GGGCC":22915, "GGGCG":6481, "GGGGA":331040, "GGGGT":39859, "GGGGC":23420, "GGGGG":1280338 }, "overrepresented_sequences": { } }, "command": "fastp -i /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/RP1 (paired)_R1.fastq.gz -I /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/RP1 (paired)_R2.fastq.gz -o output/13-wgbs/trimmed/Rio1_R1.fq.gz -O output/13-wgbs/trimmed/Rio1_R2.fq.gz --detect_adapter_for_pe --trim_poly_g --trim_front1 10 --trim_front2 10 --length_required 50 --thread 16 --json output/13-wgbs/fastp/Rio1.fastp.json --html output/13-wgbs/fastp/Rio1.fastp.html " }