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"GTCAT":138180, "GTCAC":2357864, "GTCAG":50773, "GTCTA":97249, "GTCTT":506875, "GTCTC":183023, "GTCTG":1912648, "GTCCA":17302, "GTCCT":169766, "GTCCC":208037, "GTCCG":9781, "GTCGA":536883, "GTCGT":919175, "GTCGC":41575, "GTCGG":417105, "GTGAA":8774583, "GTGAT":12096710, "GTGAC":157412, "GTGAG":4257277, "GTGTA":13094892, "GTGTT":16874035, "GTGTC":406019, "GTGTG":9552726, "GTGCA":38355, "GTGCT":56239, "GTGCC":81916, "GTGCG":222091, "GTGGA":4580925, "GTGGT":6663147, "GTGGC":201846, "GTGGG":3129400, "GCAAA":60617, "GCAAT":57145, "GCAAC":12655, "GCAAG":23989, "GCATA":60125, "GCATT":90303, "GCATC":16889, "GCATG":36439, "GCACA":2309827, "GCACT":12574, "GCACC":14809, "GCACG":4725, "GCAGA":33830, "GCAGT":39065, "GCAGC":7873, "GCAGG":18789, "GCTAA":40507, "GCTAT":62289, "GCTAC":7235, "GCTAG":22211, "GCTTA":50382, "GCTTT":212273, "GCTTC":66166, "GCTTG":52290, "GCTCA":10786, "GCTCT":61754, "GCTCC":71865, "GCTCG":9169, "GCTGA":28206, "GCTGT":40171, "GCTGC":6218, "GCTGG":17434, "GCCAA":9334, 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"TCCCG":7217, "TCCGA":18071, "TCCGT":20544, "TCCGC":5481, "TCCGG":8404, "TCGAA":829275, "TCGAT":1234182, "TCGAC":65775, "TCGAG":623145, "TCGTA":1086950, "TCGTT":1783912, "TCGTC":153983, "TCGTG":638283, "TCGCA":7105, "TCGCT":10696, "TCGCC":5770, "TCGCG":172679, "TCGGA":619075, "TCGGT":823534, "TCGGC":48048, "TCGGG":442614, "TGAAA":19954877, "TGAAT":18431655, "TGAAC":500107, "TGAAG":7691150, "TGATA":20361931, "TGATT":26308089, "TGATC":389092, "TGATG":11299076, "TGACA":56257, "TGACT":89441, "TGACC":42903, "TGACG":441712, "TGAGA":6916971, "TGAGT":8221664, "TGAGC":101761, "TGAGG":3732297, "TGTAA":20590310, "TGTAT":32794721, "TGTAC":293221, "TGTAG":10819039, "TGTTA":26260829, "TGTTT":43606232, "TGTTC":602129, "TGTTG":15788678, "TGTCA":460296, "TGTCT":258458, "TGTCC":167422, "TGTCG":665816, "TGTGA":10753002, "TGTGT":18490004, "TGTGC":145210, "TGTGG":5951470, "TGCAA":59526, "TGCAT":82685, "TGCAC":7793, "TGCAG":34235, "TGCTA":55101, "TGCTT":143010, "TGCTC":54174, "TGCTG":35853, "TGCCA":11746, 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"CTCCC":1027972, "CTCCG":6050, "CTCGA":11637, "CTCGT":15489, "CTCGC":3468, "CTCGG":6803, "CTGAA":393692, "CTGAT":63010, "CTGAC":11350, "CTGAG":26873, "CTGTA":75007, "CTGTT":128599, "CTGTC":348928, "CTGTG":47669, "CTGCA":8793, "CTGCT":26217, "CTGCC":7823, "CTGCG":3051, "CTGGA":32542, "CTGGT":136969, "CTGGC":5809, "CTGGG":107184, "CCAAA":63289, "CCAAT":21591, "CCAAC":31809, "CCAAG":12438, "CCATA":13611, "CCATT":33702, "CCATC":21817, "CCATG":9708, "CCACA":13391, "CCACT":29661, "CCACC":24659, "CCACG":4998, "CCAGA":30126, "CCAGT":337206, "CCAGC":7358, "CCAGG":9256, "CCTAA":22424, "CCTAT":20373, "CCTAC":13405, "CCTAG":9714, "CCTTA":24145, "CCTTT":361028, "CCTTC":500943, "CCTTG":18885, "CCTCA":39210, "CCTCT":599218, "CCTCC":872193, "CCTCG":4511, "CCTGA":13393, "CCTGT":345880, "CCTGC":6628, "CCTGG":9714, "CCCAA":48088, "CCCAT":22471, "CCCAC":27845, "CCCAG":31042, "CCCTA":18041, "CCCTT":296952, "CCCTC":613415, "CCCTG":10239, "CCCCA":54413, "CCCCT":366520, "CCCCC":626293, "CCCCG":5630, "CCCGA":6764, "CCCGT":6899, "CCCGC":2709, "CCCGG":3174, "CCGAA":11705, "CCGAT":13059, "CCGAC":3272, "CCGAG":4509, "CCGTA":6371, "CCGTT":25540, "CCGTC":29223, "CCGTG":6068, "CCGCA":1925, "CCGCT":3256, "CCGCC":3022, "CCGCG":1813, "CCGGA":5532, "CCGGT":7017, "CCGGC":2964, "CCGGG":4368, "CGAAA":647830, "CGAAT":654516, "CGAAC":35463, "CGAAG":302409, "CGATA":870064, "CGATT":1063094, "CGATC":87949, "CGATG":379272, "CGACA":5370, "CGACT":8366, "CGACC":4974, "CGACG":132652, "CGAGA":407420, "CGAGT":497160, "CGAGC":30103, "CGAGG":220821, "CGTAA":762556, "CGTAT":1037668, "CGTAC":73390, "CGTAG":376758, "CGTTA":1138141, "CGTTT":1751023, "CGTTC":131387, "CGTTG":463310, "CGTCA":14249, "CGTCT":447104, "CGTCC":16131, "CGTCG":198430, "CGTGA":349223, "CGTGT":624817, "CGTGC":32777, "CGTGG":213854, "CGCAA":5025, "CGCAT":6259, "CGCAC":2618, "CGCAG":3130, "CGCTA":4663, "CGCTT":10772, "CGCTC":5864, "CGCTG":3366, "CGCCA":2102, "CGCCT":5302, "CGCCC":5462, "CGCCG":1809, "CGCGA":106541, "CGCGT":146276, "CGCGC":15543, "CGCGG":74833, "CGGAA":402378, "CGGAT":564357, "CGGAC":58122, "CGGAG":213345, "CGGTA":485017, "CGGTT":709720, "CGGTC":62730, "CGGTG":263511, "CGGCA":2810, "CGGCT":17366, "CGGCC":4185, "CGGCG":78397, "CGGGA":217907, "CGGGT":335708, "CGGGC":27132, "CGGGG":217232, "GAAAA":16421952, "GAAAT":18805197, "GAAAC":172154, "GAAAG":6529854, "GAATA":13511188, "GAATT":18368343, "GAATC":260629, "GAATG":6930284, "GAACA":45929, "GAACT":393867, "GAACC":28156, "GAACG":260506, "GAAGA":6373770, "GAAGT":7496526, "GAAGC":80508, "GAAGG":2940653, "GATAA":13841688, "GATAT":21407587, "GATAC":205919, "GATAG":7689091, "GATTA":15239388, "GATTT":27579192, "GATTC":456548, "GATTG":9656565, "GATCA":61547, "GATCT":179418, "GATCC":156889, "GATCG":498318, "GATGA":7297933, "GATGT":11048553, "GATGC":88250, "GATGG":4048622, "GACAA":41106, "GACAT":52296, "GACAC":6368, "GACAG":24722, "GACTA":32956, "GACTT":81515, "GACTC":40424, "GACTG":22245, "GACCA":10150, "GACCT":29836, "GACCC":40243, "GACCG":2993, "GACGA":334551, "GACGT":513145, "GACGC":19841, "GACGG":262673, "GAGAA":6213538, "GAGAT":7085616, "GAGAC":88016, "GAGAG":6564118, "GAGTA":5900660, "GAGTT":8682521, "GAGTC":127485, "GAGTG":4509785, "GAGCA":146540, "GAGCT":31413, "GAGCC":19343, "GAGCG":186211, "GAGGA":3345850, "GAGGT":4098934, "GAGGC":49948, "GAGGG":2003926, "GTAAA":16267222, "GTAAT":17415797, "GTAAC":174691, "GTAAG":6357594, "GTATA":21929609, "GTATT":27576977, "GTATC":402754, "GTATG":11155849, "GTACA":59071, "GTACT":71814, "GTACC":28957, "GTACG":484818, "GTAGA":7725666, "GTAGT":9602597, "GTAGC":102146, "GTAGG":4174036, "GTTAA":17101461, "GTTAT":26686760, "GTTAC":288200, "GTTAG":9084505, "GTTTA":24909618, "GTTTT":44450300, "GTTTC":720489, "GTTTG":15896620, "GTTCA":123455, "GTTCT":278323, "GTTCC":182685, "GTTCG":796604, "GTTGA":10388926, "GTTGT":15109194, "GTTGC":132845, "GTTGG":5380049, "GTCAA":88487, "GTCAT":116480, "GTCAC":668126, "GTCAG":41422, "GTCTA":76375, "GTCTT":309560, "GTCTC":165892, "GTCTG":374636, "GTCCA":10085, "GTCCT":149555, "GTCCC":187858, "GTCCG":6372, "GTCGA":487363, "GTCGT":736694, "GTCGC":36950, "GTCGG":371856, "GTGAA":8052460, "GTGAT":11093671, "GTGAC":141329, "GTGAG":3888845, "GTGTA":12023175, "GTGTT":15450782, "GTGTC":281507, "GTGTG":8541911, "GTGCA":32626, "GTGCT":47269, "GTGCC":38697, "GTGCG":198740, "GTGGA":4198664, "GTGGT":6085228, "GTGGC":120578, "GTGGG":2775450, "GCAAA":47897, "GCAAT":48813, "GCAAC":7108, "GCAAG":19341, "GCATA":50598, "GCATT":76187, "GCATC":10651, "GCATG":31324, "GCACA":344783, "GCACT":7769, "GCACC":6248, "GCACG":2981, "GCAGA":24216, "GCAGT":32102, "GCAGC":5688, "GCAGG":14999, "GCTAA":34503, "GCTAT":52132, "GCTAC":5289, "GCTAG":18112, "GCTTA":41948, "GCTTT":147997, "GCTTC":50466, "GCTTG":30477, "GCTCA":6931, "GCTCT":51276, "GCTCC":63983, "GCTCG":3854, "GCTGA":21346, "GCTGT":31972, "GCTGC":4678, "GCTGG":14020, "GCCAA":6683, "GCCAT":9713, "GCCAC":5460, "GCCAG":4810, "GCCTA":5030, "GCCTT":39322, "GCCTC":60724, "GCCTG":6021, "GCCCA":5902, "GCCCT":48322, "GCCCC":70692, "GCCCG":1618, "GCCGA":2628, "GCCGT":33361, "GCCGC":1597, "GCCGG":4177, "GCGAA":268162, "GCGAT":426931, "GCGAC":21932, "GCGAG":220766, "GCGTA":395790, "GCGTT":588645, "GCGTC":83079, "GCGTG":202987, "GCGCA":3328, "GCGCT":4358, "GCGCC":2741, "GCGCG":77061, "GCGGA":184387, "GCGGT":263756, "GCGGC":25842, "GCGGG":150710, "GGAAA":7422484, "GGAAT":7088691, "GGAAC":72608, "GGAAG":3393198, "GGATA":7172979, "GGATT":9468037, "GGATC":164277, "GGATG":3963069, "GGACA":23377, "GGACT":34642, "GGACC":17102, "GGACG":219249, "GGAGA":3402207, "GGAGT":3730193, "GGAGC":43300, "GGAGG":2126157, "GGTAA":6993615, "GGTAT":10318519, "GGTAC":113957, "GGTAG":3971848, "GGTTA":10575576, "GGTTT":15318648, "GGTTC":295826, "GGTTG":5626537, "GGTCA":53019, "GGTCT":101560, "GGTCC":82533, "GGTCG":359192, "GGTGA":4413407, "GGTGT":6452433, "GGTGC":54748, "GGTGG":3275608, "GGCAA":20897, "GGCAT":33254, "GGCAC":4057, "GGCAG":16969, "GGCTA":20594, "GGCTT":61904, "GGCTC":31120, "GGCTG":14521, "GGCCA":5889, "GGCCT":28515, "GGCCC":33016, "GGCCG":9065, "GGCGA":194167, "GGCGT":324532, "GGCGC":21571, "GGCGG":190519, "GGGAA":3433996, "GGGAT":4349405, "GGGAC":62817, "GGGAG":1942536, "GGGTA":4150992, "GGGTT":7100517, "GGGTC":145860, "GGGTG":2837635, "GGGCA":19727, "GGGCT":27725, "GGGCC":22195, "GGGCG":210352, "GGGGA":2317110, "GGGGT":3847073, "GGGGC":118194, "GGGGG":2827442 }, "overrepresented_sequences": { } }, "read2_after_filtering": { "total_reads": 33149345, "total_bases": 4572105487, "q20_bases": 4532960273, "q30_bases": 4415731481, "q40_bases": 4415731481, "total_cycles": 141, "quality_curves": { 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"CTCCC":2001097, "CTCCG":210389, "CTCGA":608889, "CTCGT":304145, "CTCGC":215276, "CTCGG":323095, "CTGAA":68061, "CTGAT":45037, "CTGAC":24335, "CTGAG":17818, "CTGTA":43320, "CTGTT":32042, "CTGTC":18776, "CTGTG":7370, "CTGCA":21951, "CTGCT":15932, "CTGCC":9925, "CTGCG":2180, "CTGGA":24468, "CTGGT":3459, "CTGGC":3462, "CTGGG":51616, "CCAAA":17046271, "CCAAT":9868844, "CCAAC":5676921, "CCAAG":21756, "CCATA":10220477, "CCATT":7400358, "CCATC":4077169, "CCATG":30170, "CCACA":6133705, "CCACT":3758891, "CCACC":3457261, "CCACG":214682, "CCAGA":31174, "CCAGT":15043, "CCAGC":10587, "CCAGG":5017, "CCTAA":9363941, "CCTAT":7544605, "CCTAC":4162448, "CCTAG":14517, "CCTTA":6386546, "CCTTT":5907572, "CCTTC":2945002, "CCTTG":16458, "CCTCA":3717260, "CCTCT":3308843, "CCTCC":2101131, "CCTCG":214022, "CCTGA":27373, "CCTGT":18491, "CCTGC":10216, "CCTGG":5018, "CCCAA":6622795, "CCCAT":3923989, "CCCAC":2941236, "CCCAG":20230, "CCCTA":4795054, "CCCTT":3017491, "CCCTC":2048681, "CCCTG":14755, "CCCCA":3445110, "CCCCT":2564020, "CCCCC":5082434, "CCCCG":207136, "CCCGA":425131, "CCCGT":198399, "CCCGC":146854, "CCCGG":2564, "CCGAA":955301, "CCGAT":642723, "CCGAC":369614, "CCGAG":2739, "CCGTA":803792, "CCGTT":307261, "CCGTC":265373, "CCGTG":4182, "CCGCA":184889, "CCGCT":173556, "CCGCC":165283, "CCGCG":74705, "CCGGA":3335, "CCGGT":1960, "CCGGC":1533, "CCGGG":1560, "CGAAA":2190055, "CGAAT":1203259, "CGAAC":790875, "CGAAG":5975, "CGATA":1270480, "CGATT":773339, "CGATC":613186, "CGATG":4477, "CGACA":589153, "CGACT":406989, "CGACC":336136, "CGACG":198121, "CGAGA":5000, "CGAGT":2870, "CGAGC":1965, "CGAGG":2306, "CGTAA":1105051, "CGTAT":1129991, "CGTAC":481828, "CGTAG":2821, "CGTTA":654101, "CGTTT":558277, "CGTTC":261566, "CGTTG":3504, "CGTCA":436205, "CGTCT":339656, "CGTCC":213557, "CGTCG":458639, "CGTGA":4293, "CGTGT":332799, "CGTGC":2372, "CGTGG":3170, "CGCAA":471684, "CGCAT":307068, "CGCAC":196329, "CGCAG":2330, "CGCTA":398534, "CGCTT":269388, "CGCTC":183259, "CGCTG":2097, "CGCCA":253573, "CGCCT":150107, "CGCCC":148742, "CGCCG":382437, "CGCGA":171498, "CGCGT":92139, "CGCGC":75472, "CGCGG":1218, "CGGAA":27885, "CGGAT":2984, "CGGAC":2165, "CGGAG":2473, "CGGTA":2486, "CGGTT":3178, "CGGTC":1894, "CGGTG":320938, "CGGCA":1772, "CGGCT":1602, "CGGCC":1755, "CGGCG":1461, "CGGGA":7451, "CGGGT":1116, "CGGGC":1193, "CGGGG":3106, "GAAAA":2085535, "GAAAT":1139610, "GAAAC":616894, "GAAAG":581064, "GAATA":1024969, "GAATT":743837, "GAATC":471414, "GAATG":19399, "GAACA":566934, "GAACT":350863, "GAACC":277675, "GAACG":122773, "GAAGA":534072, "GAAGT":46973, "GAAGC":39094, "GAAGG":254904, "GATAA":1069985, "GATAT":792659, "GATAC":431247, "GATAG":17559, "GATTA":654283, "GATTT":578202, "GATTC":287606, "GATTG":5305, "GATCA":443078, "GATCT":681428, "GATCC":186885, "GATCG":98917, "GATGA":19022, "GATGT":6506, "GATGC":3908, "GATGG":15628, "GACAA":544344, "GACAT":334541, "GACAC":203181, "GACAG":5559, "GACTA":348915, "GACTT":232628, "GACTC":129310, "GACTG":3901, "GACCA":256294, "GACCT":154464, "GACCC":130323, "GACCG":61194, "GACGA":108271, "GACGT":71216, "GACGC":44846, "GACGG":2079, "GAGAA":594239, "GAGAT":302142, "GAGAC":137915, "GAGAG":377508, "GAGTA":60715, "GAGTT":44678, "GAGTC":31905, "GAGTG":324257, "GAGCA":47232, "GAGCT":36104, "GAGCC":30892, "GAGCG":116905, "GAGGA":441697, "GAGGT":40575, "GAGGC":33205, "GAGGG":243418, "GTAAA":718444, "GTAAT":707779, "GTAAC":278317, "GTAAG":9410, "GTATA":494327, "GTATT":367787, "GTATC":504636, "GTATG":4864, "GTACA":276645, "GTACT":161340, "GTACC":112805, "GTACG":70307, "GTAGA":292512, "GTAGT":4902, "GTAGC":2677, "GTAGG":325643, "GTTAA":380838, "GTTAT":319447, "GTTAC":165093, "GTTAG":3943, "GTTTA":312153, "GTTTT":288211, "GTTTC":156388, "GTTTG":6555, "GTTCA":167756, "GTTCT":115441, "GTTCC":80126, "GTTCG":29436, "GTTGA":5025, "GTTGT":7996, "GTTGC":10420, "GTTGG":4667, "GTCAA":260791, "GTCAT":253386, "GTCAC":142453, "GTCAG":4011, "GTCTA":204147, "GTCTT":130702, "GTCTC":99017, "GTCTG":4104, "GTCCA":101639, "GTCCT":76452, "GTCCC":65062, "GTCCG":54669, "GTCGA":100020, "GTCGT":386732, "GTCGC":338670, "GTCGG":7101, "GTGAA":10331, "GTGAT":6269, "GTGAC":3850, "GTGAG":8989, "GTGTA":884936, "GTGTT":7789, "GTGTC":81998, "GTGTG":10370, "GTGCA":4160, "GTGCT":11542, "GTGCC":2961, "GTGCG":1299, "GTGGA":9858, "GTGGT":331323, "GTGGC":3454, "GTGGG":14191, "GCAAA":345574, "GCAAT":211464, "GCAAC":125570, "GCAAG":4763, "GCATA":210064, "GCATT":149809, "GCATC":85949, "GCATG":4076, "GCACA":118400, "GCACT":82825, "GCACC":52749, "GCACG":32440, "GCAGA":6198, "GCAGT":4644, "GCAGC":3483, "GCAGG":4927, "GCTAA":241182, "GCTAT":205031, "GCTAC":104380, "GCTAG":2293, "GCTTA":145016, "GCTTT":142807, "GCTTC":81223, "GCTTG":3269, "GCTCA":106923, "GCTCT":94214, "GCTCC":46169, "GCTCG":30201, "GCTGA":4791, "GCTGT":3743, "GCTGC":3144, "GCTGG":4604, "GCCAA":151470, "GCCAT":143569, "GCCAC":75490, "GCCAG":3955, "GCCTA":98348, "GCCTT":69763, "GCCTC":48391, "GCCTG":4355, "GCCCA":76615, "GCCCT":56412, "GCCCC":59247, "GCCCG":27862, "GCCGA":48144, "GCCGT":333905, "GCCGC":17036, "GCCGG":1305, "GCGAA":88004, "GCGAT":60315, "GCGAC":36047, "GCGAG":1973, "GCGTA":50409, "GCGTT":30542, "GCGTC":346554, "GCGTG":2119, "GCGCA":25714, "GCGCT":21842, "GCGCC":21828, "GCGCG":14941, "GCGGA":2362, "GCGGT":1199, "GCGGC":1358, "GCGGG":2680, "GGAAA":816756, "GGAAT":268802, "GGAAC":128653, "GGAAG":302880, "GGATA":273138, "GGATT":199348, "GGATC":134460, "GGATG":15356, "GGACA":122981, "GGACT":78727, "GGACC":66951, "GGACG":6881, "GGAGA":423533, "GGAGT":40739, "GGAGC":32327, "GGAGG":262239, "GGTAA":52207, "GGTAT":31579, "GGTAC":23220, "GGTAG":7926, "GGTTA":37954, "GGTTT":28488, "GGTTC":18242, "GGTTG":12806, "GGTCA":33991, "GGTCT":15902, "GGTCC":13792, "GGTCG":319603, "GGTGA":8557, "GGTGT":6229, "GGTGC":2960, "GGTGG":332923, "GGCAA":41374, "GGCAT":24516, "GGCAC":16507, "GGCAG":5248, "GGCTA":34307, "GGCTT":20176, "GGCTC":15688, "GGCTG":4527, "GGCCA":27828, "GGCCT":15264, "GGCCC":15182, "GGCCG":3086, "GGCGA":3734, "GGCGT":2442, "GGCGC":2115, "GGCGG":2897, "GGGAA":637296, "GGGAT":155078, "GGGAC":65348, "GGGAG":251404, "GGGTA":30605, "GGGTT":23474, "GGGTC":16222, "GGGTG":13077, "GGGCA":21868, "GGGCT":18240, "GGGCC":14778, "GGGCG":3590, "GGGGA":268909, "GGGGT":27217, "GGGGC":15450, "GGGGG":1123317 }, "overrepresented_sequences": { } }, "command": "fastp -i /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/Qui5 (paired)_R1.fastq.gz -I /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/Qui5 (paired)_R2.fastq.gz -o output/13-wgbs/trimmed/Qui5_R1.fq.gz -O output/13-wgbs/trimmed/Qui5_R2.fq.gz --detect_adapter_for_pe --trim_poly_g --trim_front1 10 --trim_front2 10 --length_required 50 --thread 16 --json output/13-wgbs/fastp/Qui5.fastp.json --html output/13-wgbs/fastp/Qui5.fastp.html " }