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"GTCAT":120640, "GTCAC":1409858, "GTCAG":47257, "GTCTA":100193, "GTCTT":245583, "GTCTC":183848, "GTCTG":2035469, "GTCCA":16700, "GTCCT":162445, "GTCCC":219388, "GTCCG":9755, "GTCGA":564483, "GTCGT":758755, "GTCGC":42538, "GTCGG":431084, "GTGAA":9340892, "GTGAT":12733251, "GTGAC":162847, "GTGAG":4583986, "GTGTA":13951826, "GTGTT":17554770, "GTGTC":269224, "GTGTG":10289879, "GTGCA":35750, "GTGCT":55649, "GTGCC":22011, "GTGCG":232615, "GTGGA":4803547, "GTGGT":6923622, "GTGGC":90681, "GTGGG":3254865, "GCAAA":57112, "GCAAT":54306, "GCAAC":11485, "GCAAG":22963, "GCATA":57901, "GCATT":79282, "GCATC":8482, "GCATG":34141, "GCACA":2435840, "GCACT":10789, "GCACC":13141, "GCACG":4627, "GCAGA":31519, "GCAGT":34489, "GCAGC":4755, "GCAGG":17784, "GCTAA":40157, "GCTAT":61419, "GCTAC":6418, "GCTAG":21786, "GCTTA":49163, "GCTTT":152843, "GCTTC":52264, "GCTTG":37170, "GCTCA":8621, "GCTCT":59681, "GCTCC":74456, "GCTCG":9533, "GCTGA":26946, "GCTGT":39368, "GCTGC":4999, "GCTGG":16560, "GCCAA":7775, 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"CTCCC":1021616, "CTCCG":5860, "CTCGA":11602, "CTCGT":15837, "CTCGC":3827, "CTCGG":6419, "CTGAA":358490, "CTGAT":60120, "CTGAC":9513, "CTGAG":24246, "CTGTA":74485, "CTGTT":111672, "CTGTC":18268, "CTGTG":45600, "CTGCA":6567, "CTGCT":9672, "CTGCC":4922, "CTGCG":2972, "CTGGA":30276, "CTGGT":40068, "CTGGC":4111, "CTGGG":308666, "CCAAA":59707, "CCAAT":19590, "CCAAC":28608, "CCAAG":10729, "CCATA":12442, "CCATT":27645, "CCATC":14900, "CCATG":7896, "CCACA":11064, "CCACT":25853, "CCACC":20156, "CCACG":4872, "CCAGA":27644, "CCAGT":302873, "CCAGC":5052, "CCAGG":6505, "CCTAA":20520, "CCTAT":18543, "CCTAC":11545, "CCTAG":8529, "CCTTA":21490, "CCTTT":326686, "CCTTC":451376, "CCTTG":16886, "CCTCA":34681, "CCTCT":545297, "CCTCC":841028, "CCTCG":4689, "CCTGA":10903, "CCTGT":15176, "CCTGC":4796, "CCTGG":7302, "CCCAA":44798, "CCCAT":19121, "CCCAC":24378, "CCCAG":27350, "CCCTA":15816, "CCCTT":268141, "CCCTC":588919, "CCCTG":8213, "CCCCA":50530, "CCCCT":356022, "CCCCC":636804, "CCCCG":5567, "CCCGA":6731, "CCCGT":6587, "CCCGC":2501, "CCCGG":3141, "CCGAA":11590, "CCGAT":11834, "CCGAC":3420, "CCGAG":4365, "CCGTA":6358, "CCGTT":16287, "CCGTC":7524, "CCGTG":5880, "CCGCA":2055, "CCGCT":2705, "CCGCC":2665, "CCGCG":1807, "CCGGA":5551, "CCGGT":6303, "CCGGC":1629, "CCGGG":3957, "CGAAA":687021, "CGAAT":693297, "CGAAC":36703, "CGAAG":321653, "CGATA":914478, "CGATT":1109391, "CGATC":381692, "CGATG":401990, "CGACA":5327, "CGACT":8337, "CGACC":5233, "CGACG":138279, "CGAGA":432721, "CGAGT":519262, "CGAGC":30262, "CGAGG":229390, "CGTAA":805417, "CGTAT":1098591, "CGTAC":75954, "CGTAG":392996, "CGTTA":1189863, "CGTTT":1705471, "CGTTC":129427, "CGTTG":478719, "CGTCA":13948, "CGTCT":317800, "CGTCC":14846, "CGTCG":204234, "CGTGA":372438, "CGTGT":656135, "CGTGC":33140, "CGTGG":224281, "CGCAA":5186, "CGCAT":6244, "CGCAC":2561, "CGCAG":2986, "CGCTA":4802, "CGCTT":10332, "CGCTC":5860, "CGCTG":3489, "CGCCA":1997, "CGCCT":4785, "CGCCC":5345, "CGCCG":1839, "CGCGA":110732, "CGCGT":152086, "CGCGC":16131, 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"GACGT":540459, "GACGC":20749, "GACGG":279445, "GAGAA":6592715, "GAGAT":7441590, "GAGAC":89846, "GAGAG":7688105, "GAGTA":6178449, "GAGTT":8951969, "GAGTC":129314, "GAGTG":5008488, "GAGCA":160561, "GAGCT":31099, "GAGCC":18874, "GAGCG":195558, "GAGGA":3560989, "GAGGT":4198540, "GAGGC":47701, "GAGGG":2122907, "GTAAA":17177613, "GTAAT":18184670, "GTAAC":180252, "GTAAG":6718598, "GTATA":23203972, "GTATT":28354146, "GTATC":416745, "GTATG":11678056, "GTACA":353911, "GTACT":72034, "GTACC":30589, "GTACG":508426, "GTAGA":8154106, "GTAGT":10030477, "GTAGC":108657, "GTAGG":4304060, "GTTAA":17844282, "GTTAT":27441582, "GTTAC":297756, "GTTAG":9348512, "GTTTA":25600694, "GTTTT":45133093, "GTTTC":725401, "GTTTG":16215031, "GTTCA":115444, "GTTCT":276431, "GTTCC":184507, "GTTCG":812151, "GTTGA":10747366, "GTTGT":15440499, "GTTGC":137312, "GTTGG":5514399, "GTCAA":85087, "GTCAT":104974, "GTCAC":307132, "GTCAG":38618, "GTCTA":78970, "GTCTT":204958, "GTCTC":165515, "GTCTG":340489, "GTCCA":8869, "GTCCT":146010, "GTCCC":197138, "GTCCG":6449, "GTCGA":510733, "GTCGT":687477, "GTCGC":37922, "GTCGG":388490, "GTGAA":8557274, "GTGAT":11662445, "GTGAC":147389, "GTGAG":4177625, "GTGTA":12793035, "GTGTT":16003943, "GTGTC":237319, "GTGTG":9359659, "GTGCA":30712, "GTGCT":47058, "GTGCC":19307, "GTGCG":209562, "GTGGA":4389593, "GTGGT":6286259, "GTGGC":75185, "GTGGG":2865972, "GCAAA":45862, "GCAAT":46704, "GCAAC":6149, "GCAAG":18523, "GCATA":48350, "GCATT":68223, "GCATC":6086, "GCATG":29260, "GCACA":309719, "GCACT":6269, "GCACC":5334, "GCACG":2858, "GCAGA":21877, "GCAGT":29085, "GCAGC":3411, "GCAGG":13473, "GCTAA":34288, "GCTAT":52159, "GCTAC":4810, "GCTAG":17855, "GCTTA":41401, "GCTTT":116548, "GCTTC":44167, "GCTTG":28531, "GCTCA":5434, "GCTCT":49726, "GCTCC":66632, "GCTCG":3962, "GCTGA":20209, "GCTGT":31570, "GCTGC":3615, "GCTGG":12385, "GCCAA":5344, "GCCAT":4237, "GCCAC":3676, "GCCAG":2987, "GCCTA":4150, "GCCTT":36911, "GCCTC":59770, "GCCTG":3989, "GCCCA":4377, "GCCCT":47734, "GCCCC":76413, "GCCCG":1457, "GCCGA":2667, "GCCGT":3360, "GCCGC":1490, "GCCGG":2122, "GCGAA":288007, "GCGAT":449305, "GCGAC":22675, "GCGAG":233797, "GCGTA":416261, "GCGTT":566795, "GCGTC":47042, "GCGTG":216504, "GCGCA":3338, "GCGCT":4450, "GCGCC":2539, "GCGCG":79727, "GCGGA":198405, "GCGGT":271624, "GCGGC":18469, "GCGGG":164802, "GGAAA":7996009, "GGAAT":7438927, "GGAAC":73593, "GGAAG":3581753, "GGATA":7470840, "GGATT":9709794, "GGATC":166354, "GGATG":4138691, "GGACA":21429, "GGACT":33569, "GGACC":16645, "GGACG":227636, "GGAGA":3630719, "GGAGT":3838893, "GGAGC":44422, "GGAGG":2252071, "GGTAA":7338953, "GGTAT":10642941, "GGTAC":413536, "GGTAG":4140241, "GGTTA":10809037, "GGTTT":15627995, "GGTTC":294510, "GGTTG":5710850, "GGTCA":47784, "GGTCT":95809, "GGTCC":78865, "GGTCG":355931, "GGTGA":4554078, "GGTGT":6653981, "GGTGC":53110, "GGTGG":3385204, "GGCAA":20110, "GGCAT":24631, "GGCAC":2926, "GGCAG":13440, "GGCTA":19778, "GGCTT":48064, "GGCTC":28811, "GGCTG":13082, "GGCCA":3286, "GGCCT":25841, "GGCCC":32304, "GGCCG":2275, "GGCGA":208030, "GGCGT":254090, "GGCGC":21526, "GGCGG":188658, "GGGAA":3635820, "GGGAT":4467028, "GGGAC":60762, "GGGAG":2087473, "GGGTA":4311651, "GGGTT":7302420, "GGGTC":131571, "GGGTG":2975509, "GGGCA":14177, "GGGCT":27288, "GGGCC":15699, "GGGCG":178199, "GGGGA":2445534, "GGGGT":4165588, "GGGGC":82562, "GGGGG":4409158 }, "overrepresented_sequences": { } }, "read2_after_filtering": { "total_reads": 34443887, "total_bases": 4751396487, "q20_bases": 4706455796, "q30_bases": 4562199303, "q40_bases": 4562199303, "total_cycles": 141, "quality_curves": { 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"GACCC":126523, "GACCG":61469, "GACGA":111089, "GACGT":72119, "GACGC":45231, "GACGG":2133, "GAGAA":422566, "GAGAT":229546, "GAGAC":109680, "GAGAG":250360, "GAGTA":49158, "GAGTT":35139, "GAGTC":26198, "GAGTG":292406, "GAGCA":38321, "GAGCT":32127, "GAGCC":23901, "GAGCG":134232, "GAGGA":307171, "GAGGT":30178, "GAGGC":25174, "GAGGG":181623, "GTAAA":726584, "GTAAT":427056, "GTAAC":281332, "GTAAG":6478, "GTATA":499630, "GTATT":379479, "GTATC":477010, "GTATG":3649, "GTACA":283099, "GTACT":163540, "GTACC":114686, "GTACG":73113, "GTAGA":262570, "GTAGT":7921, "GTAGC":259905, "GTAGG":293027, "GTTAA":384444, "GTTAT":324748, "GTTAC":166896, "GTTAG":2572, "GTTTA":322205, "GTTTT":290993, "GTTTC":162121, "GTTTG":4746, "GTTCA":187765, "GTTCT":119861, "GTTCC":84248, "GTTCG":30733, "GTTGA":3714, "GTTGT":7564, "GTTGC":10036, "GTTGG":4016, "GTCAA":270222, "GTCAT":249698, "GTCAC":151503, "GTCAG":2606, "GTCTA":210797, "GTCTT":135479, "GTCTC":103211, "GTCTG":2653, "GTCCA":103463, "GTCCT":80522, "GTCCC":65364, "GTCCG":56633, "GTCGA":94310, "GTCGT":359196, "GTCGC":336313, "GTCGG":7089, "GTGAA":6797, "GTGAT":3648, "GTGAC":2411, "GTGAG":6026, "GTGTA":807788, "GTGTT":6472, "GTGTC":74101, "GTGTG":8186, "GTGCA":2559, "GTGCT":9251, "GTGCC":1800, "GTGCG":1356, "GTGGA":6909, "GTGGT":297322, "GTGGC":2272, "GTGGG":13340, "GCAAA":345962, "GCAAT":215251, "GCAAC":140340, "GCAAG":3645, "GCATA":208779, "GCATT":147752, "GCATC":90279, "GCATG":6662, "GCACA":120529, "GCACT":83787, "GCACC":51874, "GCACG":37386, "GCAGA":4486, "GCAGT":3644, "GCAGC":270836, "GCAGG":3171, "GCTAA":247262, "GCTAT":208291, "GCTAC":109717, "GCTAG":1413, "GCTTA":150365, "GCTTT":144026, "GCTTC":91545, "GCTTG":2328, "GCTCA":111109, "GCTCT":91941, "GCTCC":45758, "GCTCG":30423, "GCTGA":2738, "GCTGT":2161, "GCTGC":1954, "GCTGG":2633, "GCCAA":151519, "GCCAT":142544, "GCCAC":75008, "GCCAG":2429, "GCCTA":101188, "GCCTT":68971, "GCCTC":46292, "GCCTG":2375, "GCCCA":74268, "GCCCT":54587, "GCCCC":58493, "GCCCG":28653, "GCCGA":48383, "GCCGT":299432, "GCCGC":21470, "GCCGG":1427, "GCGAA":91052, "GCGAT":62640, "GCGAC":36820, "GCGAG":2519, "GCGTA":52170, "GCGTT":33415, "GCGTC":315624, "GCGTG":283207, "GCGCA":30637, "GCGCT":22566, "GCGCC":21715, "GCGCG":285808, "GCGGA":2647, "GCGGT":1663, "GCGGC":1532, "GCGGG":2879, "GGAAA":660658, "GGAAT":208015, "GGAAC":104470, "GGAAG":232524, "GGATA":221763, "GGATT":158553, "GGATC":109585, "GGATG":9245, "GGACA":102133, "GGACT":68891, "GGACC":53821, "GGACG":6121, "GGAGA":300629, "GGAGT":30838, "GGAGC":25465, "GGAGG":195824, "GGTAA":44083, "GGTAT":25491, "GGTAC":19889, "GGTAG":5537, "GGTTA":31696, "GGTTT":23105, "GGTTC":16924, "GGTTG":13088, "GGTCA":31260, "GGTCT":13010, "GGTCC":11981, "GGTCG":285666, "GGTGA":5524, "GGTGT":4966, "GGTGC":2001, "GGTGG":298042, "GGCAA":34920, "GGCAT":18919, "GGCAC":13949, "GGCAG":3190, "GGCTA":32837, "GGCTT":17707, "GGCTC":12710, "GGCTG":2402, "GGCCA":22664, "GGCCT":11235, "GGCCC":11959, "GGCCG":2617, "GGCGA":3646, "GGCGT":2417, "GGCGC":1959, "GGCGG":3152, "GGGAA":524550, "GGGAT":118923, "GGGAC":52346, "GGGAG":191542, "GGGTA":24341, "GGGTT":19560, "GGGTC":13206, "GGGTG":11825, "GGGCA":16669, "GGGCT":15694, "GGGCC":11109, "GGGCG":3513, "GGGGA":211951, "GGGGT":23255, "GGGGC":12126, "GGGGG":1002990 }, "overrepresented_sequences": { } }, "command": "fastp -i /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/Qui4 (paired)_R1.fastq.gz -I /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/Qui4 (paired)_R2.fastq.gz -o output/13-wgbs/trimmed/Qui4_R1.fq.gz -O output/13-wgbs/trimmed/Qui4_R2.fq.gz --detect_adapter_for_pe --trim_poly_g --trim_front1 10 --trim_front2 10 --length_required 50 --thread 16 --json output/13-wgbs/fastp/Qui4.fastp.json --html output/13-wgbs/fastp/Qui4.fastp.html " }