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"TCCCC":1434841, "TCCCG":8390, "TCCGA":21102, "TCCGT":24125, "TCCGC":6384, "TCCGG":9761, "TCGAA":968408, "TCGAT":1442166, "TCGAC":76771, "TCGAG":727328, "TCGTA":1269826, "TCGTT":2084391, "TCGTC":180032, "TCGTG":745246, "TCGCA":8290, "TCGCT":12444, "TCGCC":6723, "TCGCG":201411, "TCGGA":723039, "TCGGT":961423, "TCGGC":56168, "TCGGG":516800, "TGAAA":23307655, "TGAAT":21528158, "TGAAC":583791, "TGAAG":8981485, "TGATA":23786021, "TGATT":30728274, "TGATC":454591, "TGATG":13197907, "TGACA":65687, "TGACT":104273, "TGACC":50038, "TGACG":515873, "TGAGA":8079823, "TGAGT":9605343, "TGAGC":119022, "TGAGG":4359007, "TGTAA":24046613, "TGTAT":38301610, "TGTAC":342852, "TGTAG":12641033, "TGTTA":30679901, "TGTTT":50934266, "TGTTC":702993, "TGTTG":18445690, "TGTCA":537279, "TGTCT":301951, "TGTCC":195822, "TGTCG":777666, "TGTGA":12560592, "TGTGT":21599396, "TGTGC":169664, "TGTGG":6951731, "TGCAA":69568, "TGCAT":96396, "TGCAC":9132, "TGCAG":39989, "TGCTA":64342, "TGCTT":167057, "TGCTC":63113, 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"CTCCA":406498, "CTCCT":747398, "CTCCC":1200030, "CTCCG":7077, "CTCGA":13537, "CTCGT":18095, "CTCGC":4028, "CTCGG":7936, "CTGAA":459881, "CTGAT":73653, "CTGAC":13212, "CTGAG":31561, "CTGTA":87435, "CTGTT":149854, "CTGTC":407395, "CTGTG":55562, "CTGCA":10238, "CTGCT":30604, "CTGCC":9130, "CTGCG":3557, "CTGGA":37941, "CTGGT":159717, "CTGGC":6792, "CTGGG":125250, "CCAAA":73803, "CCAAT":25273, "CCAAC":37160, "CCAAG":14538, "CCATA":15993, "CCATT":39322, "CCATC":25411, "CCATG":11313, "CCACA":15629, "CCACT":34488, "CCACC":28776, "CCACG":5813, "CCAGA":35125, "CCAGT":393649, "CCAGC":8569, "CCAGG":10688, "CCTAA":26106, "CCTAT":23570, "CCTAC":15657, "CCTAG":11336, "CCTTA":28147, "CCTTT":421545, "CCTTC":585028, "CCTTG":21890, "CCTCA":45859, "CCTCT":700168, "CCTCC":1018044, "CCTCG":5236, "CCTGA":15630, "CCTGT":403690, "CCTGC":7739, "CCTGG":11301, "CCCAA":56330, "CCCAT":26236, "CCCAC":32379, "CCCAG":36225, "CCCTA":20895, "CCCTT":347027, "CCCTC":716725, "CCCTG":11894, "CCCCA":63619, "CCCCT":428229, "CCCCC":732212, "CCCCG":6612, "CCCGA":7895, "CCCGT":8061, "CCCGC":3139, "CCCGG":3718, "CCGAA":13650, "CCGAT":15301, "CCGAC":3841, "CCGAG":5257, "CCGTA":7389, "CCGTT":29869, "CCGTC":34251, "CCGTG":7113, "CCGCA":2259, "CCGCT":3815, "CCGCC":3479, "CCGCG":2102, "CCGGA":6467, "CCGGT":8221, "CCGGC":3465, "CCGGG":5060, "CGAAA":756608, "CGAAT":763929, "CGAAC":41485, "CGAAG":353540, "CGATA":1017560, "CGATT":1241906, "CGATC":102734, "CGATG":442505, "CGACA":6272, "CGACT":9879, "CGACC":5749, "CGACG":154897, "CGAGA":475739, "CGAGT":580240, "CGAGC":35085, "CGAGG":257764, "CGTAA":891136, "CGTAT":1212570, "CGTAC":85654, "CGTAG":440227, "CGTTA":1329755, "CGTTT":2045426, "CGTTC":153489, "CGTTG":541519, "CGTCA":16674, "CGTCT":522059, "CGTCC":18865, "CGTCG":231956, "CGTGA":407491, "CGTGT":729966, "CGTGC":38149, "CGTGG":249957, "CGCAA":5908, "CGCAT":7245, "CGCAC":3078, "CGCAG":3640, "CGCTA":5459, "CGCTT":12613, "CGCTC":6774, "CGCTG":3934, "CGCCA":2450, "CGCCT":6190, "CGCCC":6381, "CGCCG":2101, "CGCGA":124348, "CGCGT":170761, "CGCGC":18196, "CGCGG":87297, "CGGAA":470062, "CGGAT":658552, "CGGAC":67943, "CGGAG":249140, "CGGTA":566109, "CGGTT":828657, "CGGTC":72999, "CGGTG":307508, "CGGCA":3243, "CGGCT":20360, "CGGCC":4838, "CGGCG":91529, "CGGGA":254764, "CGGGT":391983, "CGGGC":31664, "CGGGG":253628, "GAAAA":19181901, "GAAAT":21966742, "GAAAC":201347, "GAAAG":7628723, "GAATA":15779299, "GAATT":21458476, "GAATC":304406, "GAATG":8096355, "GAACA":53662, "GAACT":459678, "GAACC":32774, "GAACG":304279, "GAAGA":7446077, "GAAGT":8752306, "GAAGC":93988, "GAAGG":3434754, "GATAA":16170538, "GATAT":25010329, "GATAC":240415, "GATAG":8981348, "GATTA":17798209, "GATTT":32213520, "GATTC":532594, "GATTG":11278751, "GATCA":71749, "GATCT":209849, "GATCC":183566, "GATCG":582061, "GATGA":8525196, "GATGT":12905532, "GATGC":103068, "GATGG":4729212, "GACAA":47949, "GACAT":61130, "GACAC":7423, "GACAG":28799, "GACTA":38494, "GACTT":95199, "GACTC":47042, "GACTG":26028, "GACCA":11877, "GACCT":34860, "GACCC":46924, "GACCG":3504, "GACGA":390416, "GACGT":599773, "GACGC":23094, "GACGG":306430, "GAGAA":7258590, "GAGAT":8277526, "GAGAC":102450, "GAGAG":7669116, "GAGTA":6893382, "GAGTT":10143476, "GAGTC":149083, "GAGTG":5266792, "GAGCA":171093, "GAGCT":36651, "GAGCC":22665, "GAGCG":217317, "GAGGA":3906955, "GAGGT":4786913, "GAGGC":58388, "GAGGG":2341923, "GTAAA":18998947, "GTAAT":20340538, "GTAAC":203958, "GTAAG":7424819, "GTATA":25616280, "GTATT":32211716, "GTATC":470250, "GTATG":13027666, "GTACA":69168, "GTACT":83861, "GTACC":33806, "GTACG":566313, "GTAGA":9025006, "GTAGT":11219394, "GTAGC":119613, "GTAGG":4875669, "GTTAA":19977051, "GTTAT":31175078, "GTTAC":336647, "GTTAG":10613351, "GTTTA":29097398, "GTTTT":51921658, "GTTTC":841704, "GTTTG":18568951, "GTTCA":144268, "GTTCT":325276, "GTTCC":213478, "GTTCG":930279, "GTTGA":12137376, "GTTGT":17648144, "GTTGC":155207, "GTTGG":6284417, "GTCAA":103160, "GTCAT":135942, "GTCAC":780015, "GTCAG":48259, "GTCTA":89143, "GTCTT":361505, "GTCTC":193803, "GTCTG":437433, "GTCCA":11715, "GTCCT":174725, "GTCCC":219588, "GTCCG":7447, "GTCGA":569167, "GTCGT":860390, "GTCGC":43029, "GTCGG":434073, "GTGAA":9402252, "GTGAT":12956421, "GTGAC":165114, "GTGAG":4542210, "GTGTA":14043366, "GTGTT":18048847, "GTGTC":328752, "GTGTG":9979915, "GTGCA":38231, "GTGCT":55233, "GTGCC":45311, "GTGCG":232082, "GTGGA":4905055, "GTGGT":7106286, "GTGGC":140721, "GTGGG":3243331, "GCAAA":56033, "GCAAT":57144, "GCAAC":8337, "GCAAG":22576, "GCATA":59090, "GCATT":88801, "GCATC":12372, "GCATG":36552, "GCACA":402433, "GCACT":9068, "GCACC":7265, "GCACG":3498, "GCAGA":28264, "GCAGT":37448, "GCAGC":6596, "GCAGG":17589, "GCTAA":40408, "GCTAT":60796, "GCTAC":6137, "GCTAG":21090, "GCTTA":48846, "GCTTT":172775, "GCTTC":58880, "GCTTG":35645, "GCTCA":8109, "GCTCT":59702, "GCTCC":74696, "GCTCG":4476, "GCTGA":25100, "GCTGT":37157, "GCTGC":5474, "GCTGG":16379, "GCCAA":7784, "GCCAT":11396, "GCCAC":6391, "GCCAG":5582, "GCCTA":5867, "GCCTT":45915, "GCCTC":70756, "GCCTG":7052, "GCCCA":6872, "GCCCT":56459, "GCCCC":82646, "GCCCG":1879, "GCCGA":3078, "GCCGT":38999, "GCCGC":1852, "GCCGG":4891, "GCGAA":313455, "GCGAT":498753, "GCGAC":25625, "GCGAG":257718, "GCGTA":462319, "GCGTT":687739, "GCGTC":97023, "GCGTG":236912, "GCGCA":3882, "GCGCT":5120, "GCGCC":3197, "GCGCG":90103, "GCGGA":215205, "GCGGT":307872, "GCGGC":30089, "GCGGG":176317, "GGAAA":8671089, "GGAAT":8279203, "GGAAC":84624, "GGAAG":3963544, "GGATA":8380988, "GGATT":11057532, "GGATC":191942, "GGATG":4630582, "GGACA":27267, "GGACT":40359, "GGACC":19937, "GGACG":255935, "GGAGA":3974723, "GGAGT":4356172, "GGAGC":50454, "GGAGG":2483313, "GGTAA":8170392, "GGTAT":12055020, "GGTAC":133057, "GGTAG":4638878, "GGTTA":12353094, "GGTTT":17892294, "GGTTC":345207, "GGTTG":6570974, "GGTCA":61780, "GGTCT":118461, "GGTCC":96269, "GGTCG":419342, "GGTGA":5152215, "GGTGT":7536916, "GGTGC":64232, "GGTGG":3826198, "GGCAA":24482, "GGCAT":38916, "GGCAC":4687, "GGCAG":19800, "GGCTA":24014, "GGCTT":72358, "GGCTC":36374, "GGCTG":16957, "GGCCA":6837, "GGCCT":33291, "GGCCC":38508, "GGCCG":10609, "GGCGA":226706, "GGCGT":379008, "GGCGC":25120, "GGCGG":222404, "GGGAA":4011730, "GGGAT":5079540, "GGGAC":73211, "GGGAG":2269707, "GGGTA":4849393, "GGGTT":8295515, "GGGTC":170388, "GGGTG":3314412, "GGGCA":23081, "GGGCT":32392, "GGGCC":25965, "GGGCG":245550, "GGGGA":2706213, "GGGGT":4494449, "GGGGC":137983, "GGGGG":3302011 }, "overrepresented_sequences": { } }, "read2_after_filtering": { "total_reads": 38720614, "total_bases": 5340552410, "q20_bases": 5294813491, "q30_bases": 5157895060, "q40_bases": 5157895060, "total_cycles": 141, "quality_curves": { 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"GACCA":299169, "GACCT":180491, "GACCC":152197, "GACCG":71268, "GACGA":126616, "GACGT":83026, "GACGC":52232, "GACGG":2441, "GAGAA":694255, "GAGAT":352800, "GAGAC":161009, "GAGAG":441407, "GAGTA":70885, "GAGTT":52232, "GAGTC":37310, "GAGTG":378498, "GAGCA":55258, "GAGCT":42072, "GAGCC":36029, "GAGCG":136499, "GAGGA":516284, "GAGGT":47418, "GAGGC":38877, "GAGGG":284199, "GTAAA":838947, "GTAAT":826815, "GTAAC":325261, "GTAAG":10955, "GTATA":577437, "GTATT":429482, "GTATC":589014, "GTATG":5680, "GTACA":322866, "GTACT":188641, "GTACC":131821, "GTACG":82206, "GTAGA":341471, "GTAGT":5758, "GTAGC":3084, "GTAGG":380173, "GTTAA":444720, "GTTAT":373146, "GTTAC":192573, "GTTAG":4618, "GTTTA":364377, "GTTTT":336603, "GTTTC":182796, "GTTTG":7673, "GTTCA":195624, "GTTCT":134997, "GTTCC":93665, "GTTCG":34437, "GTTGA":5900, "GTTGT":9371, "GTTGC":12256, "GTTGG":5447, "GTCAA":304541, "GTCAT":296004, "GTCAC":166294, "GTCAG":4704, "GTCTA":238285, "GTCTT":152649, "GTCTC":115309, "GTCTG":4811, "GTCCA":118517, "GTCCT":89337, "GTCCC":76056, "GTCCG":63732, "GTCGA":116693, "GTCGT":451524, "GTCGC":395314, "GTCGG":8316, "GTGAA":12086, "GTGAT":7312, "GTGAC":4480, "GTGAG":10540, "GTGTA":1032919, "GTGTT":9112, "GTGTC":95720, "GTGTG":12145, "GTGCA":4877, "GTGCT":13504, "GTGCC":3444, "GTGCG":1511, "GTGGA":11510, "GTGGT":386813, "GTGGC":4051, "GTGGG":16484, "GCAAA":403715, "GCAAT":247139, "GCAAC":146807, "GCAAG":5559, "GCATA":245408, "GCATT":175021, "GCATC":100292, "GCATG":4734, "GCACA":138415, "GCACT":96701, "GCACC":61596, "GCACG":37755, "GCAGA":7235, "GCAGT":5405, "GCAGC":4087, "GCAGG":5768, "GCTAA":281490, "GCTAT":239114, "GCTAC":122055, "GCTAG":2639, "GCTTA":169427, "GCTTT":166994, "GCTTC":94822, "GCTTG":3801, "GCTCA":124861, "GCTCT":109968, "GCTCC":53809, "GCTCG":35187, "GCTGA":5586, "GCTGT":4371, "GCTGC":3633, "GCTGG":5394, "GCCAA":176716, "GCCAT":167646, "GCCAC":88137, "GCCAG":4611, "GCCTA":114907, "GCCTT":81541, "GCCTC":56578, "GCCTG":5088, "GCCCA":89591, "GCCCT":65989, "GCCCC":69238, "GCCCG":32530, "GCCGA":56167, "GCCGT":389767, "GCCGC":19909, "GCCGG":1522, "GCGAA":102598, "GCGAT":70430, "GCGAC":41914, "GCGAG":2339, "GCGTA":58767, "GCGTT":35705, "GCGTC":404489, "GCGTG":2486, "GCGCA":30138, "GCGCT":25506, "GCGCC":25380, "GCGCG":17478, "GCGGA":2753, "GCGGT":1423, "GCGGC":1593, "GCGGG":3103, "GGAAA":953929, "GGAAT":314184, "GGAAC":150267, "GGAAG":353657, "GGATA":319107, "GGATT":232795, "GGATC":157194, "GGATG":17873, "GGACA":143627, "GGACT":91833, "GGACC":78279, "GGACG":7999, "GGAGA":494540, "GGAGT":47550, "GGAGC":37732, "GGAGG":306442, "GGTAA":60900, "GGTAT":36878, "GGTAC":27152, "GGTAG":9243, "GGTTA":44278, "GGTTT":33132, "GGTTC":21315, "GGTTG":15027, "GGTCA":39729, "GGTCT":18651, "GGTCC":16060, "GGTCG":373056, "GGTGA":10007, "GGTGT":7226, "GGTGC":3439, "GGTGG":388594, "GGCAA":48512, "GGCAT":28532, "GGCAC":19336, "GGCAG":6146, "GGCTA":40003, "GGCTT":23631, "GGCTC":18253, "GGCTG":5293, "GGCCA":32492, "GGCCT":17786, "GGCCC":17909, "GGCCG":3609, "GGCGA":4321, "GGCGT":2863, "GGCGC":2458, "GGCGG":3358, "GGGAA":744276, "GGGAT":181084, "GGGAC":76338, "GGGAG":293667, "GGGTA":35612, "GGGTT":27336, "GGGTC":18946, "GGGTG":15172, "GGGCA":25590, "GGGCT":21280, "GGGCC":17325, "GGGCG":4166, "GGGGA":313830, "GGGGT":31676, "GGGGC":18071, "GGGGG":1307589 }, "overrepresented_sequences": { } }, "command": "fastp -i /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/Qui1 (paired)_R1.fastq.gz -I /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/Qui1 (paired)_R2.fastq.gz -o output/13-wgbs/trimmed/Qui1_R1.fq.gz -O output/13-wgbs/trimmed/Qui1_R2.fq.gz --detect_adapter_for_pe --trim_poly_g --trim_front1 10 --trim_front2 10 --length_required 50 --thread 16 --json output/13-wgbs/fastp/Qui1.fastp.json --html output/13-wgbs/fastp/Qui1.fastp.html " }