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"TCCCC":896724, "TCCCG":7767, "TCCGA":17449, "TCCGT":20715, "TCCGC":4826, "TCCGG":8222, "TCGAA":920027, "TCGAT":1361295, "TCGAC":69209, "TCGAG":682433, "TCGTA":1208894, "TCGTT":1908639, "TCGTC":150572, "TCGTG":680723, "TCGCA":7382, "TCGCT":10950, "TCGCC":4851, "TCGCG":184538, "TCGGA":680260, "TCGGT":878830, "TCGGC":48255, "TCGGG":464745, "TGAAA":23225239, "TGAAT":20709306, "TGAAC":542657, "TGAAG":8727851, "TGATA":23059736, "TGATT":28669051, "TGATC":338415, "TGATG":12512435, "TGACA":52225, "TGACT":75413, "TGACC":27500, "TGACG":503730, "TGAGA":7935292, "TGAGT":9430105, "TGAGC":100396, "TGAGG":4061193, "TGTAA":23346863, "TGTAT":36570239, "TGTAC":309065, "TGTAG":11889403, "TGTTA":28995121, "TGTTT":47030016, "TGTTC":568638, "TGTTG":16782309, "TGTCA":121551, "TGTCT":229789, "TGTCC":123564, "TGTCG":696466, "TGTGA":11888464, "TGTGT":20282505, "TGTGC":144785, "TGTGG":6306732, "TGCAA":55905, "TGCAT":74853, "TGCAC":6494, "TGCAG":29344, "TGCTA":55443, "TGCTT":132289, "TGCTC":42945, "TGCTG":33135, 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"CTCCC":755352, "CTCCG":5653, "CTCGA":12089, "CTCGT":17151, "CTCGC":3931, "CTCGG":6320, "CTGAA":428536, "CTGAT":60428, "CTGAC":9691, "CTGAG":387285, "CTGTA":73810, "CTGTT":122873, "CTGTC":18989, "CTGTG":44076, "CTGCA":6220, "CTGCT":20443, "CTGCC":4854, "CTGCG":2888, "CTGGA":30163, "CTGGT":112156, "CTGGC":3359, "CTGGG":127683, "CCAAA":65769, "CCAAT":22124, "CCAAC":32444, "CCAAG":11847, "CCATA":14197, "CCATT":30051, "CCATC":18825, "CCATG":7710, "CCACA":11993, "CCACT":29227, "CCACC":22512, "CCACG":4964, "CCAGA":24241, "CCAGT":370232, "CCAGC":4227, "CCAGG":6933, "CCTAA":22466, "CCTAT":20869, "CCTAC":13613, "CCTAG":8009, "CCTTA":24141, "CCTTT":309076, "CCTTC":381004, "CCTTG":17664, "CCTCA":37735, "CCTCT":446847, "CCTCC":643200, "CCTCG":4483, "CCTGA":11674, "CCTGT":15962, "CCTGC":4275, "CCTGG":6791, "CCCAA":48056, "CCCAT":21328, "CCCAC":27151, "CCCAG":25969, "CCCTA":17165, "CCCTT":236805, "CCCTC":456118, "CCCTG":8087, "CCCCA":49552, "CCCCT":279471, "CCCCC":476429, "CCCCG":5466, "CCCGA":6409, "CCCGT":7263, "CCCGC":2416, "CCCGG":2880, "CCGAA":11217, "CCGAT":12381, "CCGAC":3479, "CCGAG":4401, "CCGTA":6913, "CCGTT":24403, "CCGTC":21842, "CCGTG":6039, "CCGCA":1905, "CCGCT":3144, "CCGCC":2311, "CCGCG":1670, "CCGGA":5295, "CCGGT":6927, "CCGGC":2336, "CCGGG":3866, "CGAAA":738226, "CGAAT":737157, "CGAAC":39187, "CGAAG":344911, "CGATA":989305, "CGATT":1169640, "CGATC":92310, "CGATG":419385, "CGACA":5505, "CGACT":8156, "CGACC":4200, "CGACG":145602, "CGAGA":467003, "CGAGT":544622, "CGAGC":31435, "CGAGG":241900, "CGTAA":873974, "CGTAT":1179220, "CGTAC":80710, "CGTAG":417770, "CGTTA":1273572, "CGTTT":1879488, "CGTTC":132348, "CGTTG":496753, "CGTCA":14180, "CGTCT":467510, "CGTCC":14110, "CGTCG":208125, "CGTGA":387922, "CGTGT":674896, "CGTGC":33779, "CGTGG":225392, "CGCAA":5241, "CGCAT":6491, "CGCAC":2795, "CGCAG":2747, "CGCTA":5291, "CGCTT":11135, "CGCTC":5645, "CGCTG":2945, "CGCCA":1584, "CGCCT":4485, "CGCCC":4488, "CGCCG":1460, "CGCGA":115886, "CGCGT":159536, "CGCGC":17026, 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"GACGT":572281, "GACGC":21393, "GACGG":293413, "GAGAA":7288922, "GAGAT":8189591, "GAGAC":91374, "GAGAG":8948370, "GAGTA":7060185, "GAGTT":9489471, "GAGTC":123635, "GAGTG":5302667, "GAGCA":159361, "GAGCT":28372, "GAGCC":13326, "GAGCG":204201, "GAGGA":3849966, "GAGGT":4460965, "GAGGC":49397, "GAGGG":2255661, "GTAAA":18728289, "GTAAT":19788197, "GTAAC":192526, "GTAAG":7236047, "GTATA":25198606, "GTATT":30383248, "GTATC":398274, "GTATG":12390429, "GTACA":56496, "GTACT":427745, "GTACC":22195, "GTACG":540429, "GTAGA":8813311, "GTAGT":10530045, "GTAGC":105018, "GTAGG":4568770, "GTTAA":19210338, "GTTAT":29428215, "GTTAC":299822, "GTTAG":9886422, "GTTTA":27365866, "GTTTT":47918086, "GTTTC":697809, "GTTTG":16996734, "GTTCA":114005, "GTTCT":245649, "GTTCC":131901, "GTTCG":834711, "GTTGA":11322887, "GTTGT":16015792, "GTTGC":134334, "GTTGG":5707081, "GTCAA":84931, "GTCAT":102846, "GTCAC":374420, "GTCAG":37725, "GTCTA":80158, "GTCTT":273047, "GTCTC":119225, "GTCTG":407454, "GTCCA":8760, "GTCCT":109260, "GTCCC":130837, "GTCCG":6488, "GTCGA":527229, "GTCGT":772325, "GTCGC":37779, "GTCGG":405904, "GTGAA":9240303, "GTGAT":12212764, "GTGAC":150599, "GTGAG":4372954, "GTGTA":13468734, "GTGTT":16632263, "GTGTC":271610, "GTGTG":9510823, "GTGCA":30240, "GTGCT":43559, "GTGCC":29211, "GTGCG":219333, "GTGGA":4646611, "GTGGT":6347158, "GTGGC":118730, "GTGGG":2958217, "GCAAA":45232, "GCAAT":44798, "GCAAC":6418, "GCAAG":17818, "GCATA":47889, "GCATT":67318, "GCATC":9871, "GCATG":27670, "GCACA":376596, "GCACT":6359, "GCACC":4981, "GCACG":3064, "GCAGA":20708, "GCAGT":28912, "GCAGC":4300, "GCAGG":12689, "GCTAA":34369, "GCTAT":51723, "GCTAC":4979, "GCTAG":18048, "GCTTA":40873, "GCTTT":141816, "GCTTC":40748, "GCTTG":28462, "GCTCA":5312, "GCTCT":38843, "GCTCC":45997, "GCTCG":3851, "GCTGA":19027, "GCTGT":30410, "GCTGC":3034, "GCTGG":11144, "GCCAA":5187, "GCCAT":6716, "GCCAC":3503, "GCCAG":2809, "GCCTA":4173, "GCCTT":30848, "GCCTC":43216, "GCCTG":3479, "GCCCA":3778, "GCCCT":34831, "GCCCC":50846, "GCCCG":1253, "GCCGA":2391, "GCCGT":24100, "GCCGC":1185, "GCCGG":3652, "GCGAA":307750, "GCGAT":473336, "GCGAC":23030, "GCGAG":247364, "GCGTA":444970, "GCGTT":640417, "GCGTC":83908, "GCGTG":221582, "GCGCA":3561, "GCGCT":4588, "GCGCC":2156, "GCGCG":84147, "GCGGA":208646, "GCGGT":293537, "GCGGC":28754, "GCGGG":168633, "GGAAA":8729006, "GGAAT":8019155, "GGAAC":76478, "GGAAG":3880118, "GGATA":8166345, "GGATT":10292422, "GGATC":151682, "GGATG":4371182, "GGACA":21577, "GGACT":29383, "GGACC":11122, "GGACG":243545, "GGAGA":3986644, "GGAGT":4083390, "GGAGC":44251, "GGAGG":2386998, "GGTAA":7925080, "GGTAT":11349800, "GGTAC":120427, "GGTAG":4354883, "GGTTA":11477464, "GGTTT":16336036, "GGTTC":278049, "GGTTG":5907594, "GGTCA":48180, "GGTCT":77001, "GGTCC":49247, "GGTCG":384912, "GGTGA":4806965, "GGTGT":6829410, "GGTGC":54799, "GGTGG":3434665, "GGCAA":19109, "GGCAT":30190, "GGCAC":2793, "GGCAG":15684, "GGCTA":19197, "GGCTT":57258, "GGCTC":17727, "GGCTG":12080, "GGCCA":3945, "GGCCT":17217, "GGCCC":18481, "GGCCG":7958, "GGCGA":216029, "GGCGT":350206, "GGCGC":21865, "GGCGG":216147, "GGGAA":3931607, "GGGAT":4756768, "GGGAC":65221, "GGGAG":2232941, "GGGTA":4559713, "GGGTT":7410030, "GGGTC":145673, "GGGTG":3025157, "GGGCA":19585, "GGGCT":21995, "GGGCC":15170, "GGGCG":241412, "GGGGA":2607985, "GGGGT":4112171, "GGGGC":143618, "GGGGG":3259986 }, "overrepresented_sequences": { } }, "read2_after_filtering": { "total_reads": 36956713, "total_bases": 5118550090, "q20_bases": 5070808889, "q30_bases": 4925046193, "q40_bases": 4925046193, "total_cycles": 141, "quality_curves": { 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"GACCC":130856, "GACCG":61711, "GACGA":112235, "GACGT":75528, "GACGC":45261, "GACGG":1793, "GAGAA":765633, "GAGAT":374668, "GAGAC":156581, "GAGAG":493562, "GAGTA":74410, "GAGTT":51469, "GAGTC":29558, "GAGTG":357417, "GAGCA":58578, "GAGCT":45395, "GAGCC":26523, "GAGCG":133404, "GAGGA":571350, "GAGGT":46991, "GAGGC":37603, "GAGGG":308603, "GTAAA":779487, "GTAAT":460902, "GTAAC":287676, "GTAAG":8361, "GTATA":542477, "GTATT":417555, "GTATC":561361, "GTATG":3236, "GTACA":297324, "GTACT":173182, "GTACC":120893, "GTACG":75074, "GTAGA":333917, "GTAGT":3591, "GTAGC":1676, "GTAGG":360276, "GTTAA":413331, "GTTAT":352011, "GTTAC":188187, "GTTAG":2403, "GTTTA":358030, "GTTTT":324332, "GTTTC":177206, "GTTTG":4112, "GTTCA":182313, "GTTCT":123713, "GTTCC":88140, "GTTCG":32451, "GTTGA":2822, "GTTGT":5852, "GTTGC":10218, "GTTGG":2976, "GTCAA":268126, "GTCAT":250551, "GTCAC":152843, "GTCAG":1895, "GTCTA":216559, "GTCTT":143064, "GTCTC":105090, "GTCTG":2053, "GTCCA":103553, "GTCCT":80015, "GTCCC":69117, "GTCCG":56526, "GTCGA":95121, "GTCGT":423168, "GTCGC":372599, "GTCGG":6658, "GTGAA":10103, "GTGAT":3640, "GTGAC":358593, "GTGAG":7414, "GTGTA":674870, "GTGTT":7215, "GTGTC":38121, "GTGTG":365646, "GTGCA":1951, "GTGCT":10482, "GTGCC":1723, "GTGCG":927, "GTGGA":8419, "GTGGT":364394, "GTGGC":2011, "GTGGG":13720, "GCAAA":373511, "GCAAT":232399, "GCAAC":133492, "GCAAG":2613, "GCATA":234465, "GCATT":167782, "GCATC":96977, "GCATG":1669, "GCACA":125658, "GCACT":89772, "GCACC":54276, "GCACG":33134, "GCAGA":3208, "GCAGT":2613, "GCAGC":1583, "GCAGG":2142, "GCTAA":264614, "GCTAT":224257, "GCTAC":113143, "GCTAG":926, "GCTTA":167312, "GCTTT":161931, "GCTTC":101766, "GCTTG":1188, "GCTCA":109243, "GCTCT":99348, "GCTCC":49227, "GCTCG":31204, "GCTGA":1724, "GCTGT":1365, "GCTGC":1050, "GCTGG":1289, "GCCAA":152636, "GCCAT":142957, "GCCAC":72132, "GCCAG":1431, "GCCTA":106090, "GCCTT":72943, "GCCTC":48320, "GCCTG":1361, "GCCCA":72084, "GCCCT":54927, "GCCCC":59551, "GCCCG":27758, "GCCGA":47864, "GCCGT":369981, "GCCGC":17406, "GCCGG":850, "GCGAA":91640, "GCGAT":65608, "GCGAC":37085, "GCGAG":1755, "GCGTA":55231, "GCGTT":34149, "GCGTC":381644, "GCGTG":2078, "GCGCA":29146, "GCGCT":22301, "GCGCC":21725, "GCGCG":15314, "GCGGA":2070, "GCGGT":785, "GCGGC":835, "GCGGG":2121, "GGAAA":988008, "GGAAT":343945, "GGAAC":147944, "GGAAG":385772, "GGATA":350165, "GGATT":256130, "GGATC":136290, "GGATG":16710, "GGACA":142805, "GGACT":99321, "GGACC":61799, "GGACG":7504, "GGAGA":544545, "GGAGT":47175, "GGAGC":37870, "GGAGG":329666, "GGTAA":61920, "GGTAT":41750, "GGTAC":25757, "GGTAG":7809, "GGTTA":42304, "GGTTT":35821, "GGTTC":19368, "GGTTG":12473, "GGTCA":30073, "GGTCT":15540, "GGTCC":11507, "GGTCG":352670, "GGTGA":7272, "GGTGT":3839, "GGTGC":1497, "GGTGG":367265, "GGCAA":51661, "GGCAT":32084, "GGCAC":18281, "GGCAG":2173, "GGCTA":42625, "GGCTT":26210, "GGCTC":15831, "GGCTG":1273, "GGCCA":23528, "GGCCT":13524, "GGCCC":12476, "GGCCG":2128, "GGCGA":3918, "GGCGT":2367, "GGCGC":1779, "GGCGG":2234, "GGGAA":756564, "GGGAT":195252, "GGGAC":75715, "GGGAG":313401, "GGGTA":37329, "GGGTT":27445, "GGGTC":14902, "GGGTG":12873, "GGGCA":26302, "GGGCT":21701, "GGGCC":12964, "GGGCG":3312, "GGGGA":330196, "GGGGT":30526, "GGGGC":16890, "GGGGG":1208908 }, "overrepresented_sequences": { } }, "command": "fastp -i /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/PUM2 (paired)_R1.fastq.gz -I /mmfs1/gscratch/scrubbed/sr320/chil-wgbs/PUM2 (paired)_R2.fastq.gz -o output/13-wgbs/trimmed/Pum2_R1.fq.gz -O output/13-wgbs/trimmed/Pum2_R2.fq.gz --detect_adapter_for_pe --trim_poly_g --trim_front1 10 --trim_front2 10 --length_required 50 --thread 16 --json output/13-wgbs/fastp/Pum2.fastp.json --html output/13-wgbs/fastp/Pum2.fastp.html " }